Wall clock time and date at job start Mon Mar 30 2020 01:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48498 * 109.47039 * 239.99103 * 3 2 1 5 5 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47130 * 119.99821 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47306 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.47324 * 55.00182 * 16 15 14 18 18 C 1.53001 * 109.47212 * 294.99759 * 16 15 14 19 19 C 1.53003 * 109.47346 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.46716 * 60.00298 * 19 18 16 21 21 C 1.53001 * 109.46969 * 299.99932 * 20 19 18 22 22 C 1.52998 * 109.47212 * 60.00143 * 21 20 19 23 23 H 1.09003 * 109.46784 * 179.97438 * 22 21 20 24 24 O 1.42901 * 109.47267 * 59.99982 * 22 21 20 25 25 H 0.97008 * 119.99515 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 27 27 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 28 28 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 29 29 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 30 30 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 31 31 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 32 32 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 33 33 H 1.09009 * 109.47378 * 299.99899 * 15 14 13 34 34 H 1.08993 * 109.47209 * 59.99808 * 15 14 13 35 35 H 1.08993 * 109.46987 * 300.00394 * 18 16 15 36 36 H 1.09005 * 109.46913 * 60.00240 * 18 16 15 37 37 H 1.08998 * 109.46727 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.47032 * 300.00387 * 19 18 16 39 39 H 1.09001 * 109.46869 * 59.99928 * 20 19 18 40 40 H 1.08995 * 109.46612 * 179.97438 * 20 19 18 41 41 H 1.08999 * 109.46748 * 180.02562 * 21 20 19 42 42 H 1.08993 * 109.46987 * 299.99750 * 21 20 19 43 43 H 0.96699 * 114.00414 * 59.99450 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0055 14 6 1.4330 -7.4030 0.0109 15 6 2.4271 -8.5660 0.0159 16 6 1.6621 -9.8909 0.0210 17 1 0.9703 -9.9143 -0.8210 18 6 0.8787 -10.0226 1.3286 19 6 0.1132 -11.3473 1.3334 20 6 1.1024 -12.5083 1.2124 21 6 1.8857 -12.3767 -0.0952 22 6 2.6512 -11.0520 -0.1000 23 1 3.2096 -10.9585 -1.0314 24 8 3.5583 -11.0219 1.0038 25 1 -0.4850 0.8402 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8719 -3.6043 -0.8894 30 1 3.1355 -6.1343 0.0057 31 1 0.8060 -7.4568 0.9009 32 1 0.8066 -7.4648 -0.8790 33 1 3.0539 -8.5121 -0.8743 34 1 3.0538 -8.5044 0.9056 35 1 1.5706 -9.9992 2.1705 36 1 0.1737 -9.1957 1.4146 37 1 -0.4445 -11.4412 2.2652 38 1 -0.5787 -11.3702 0.4915 39 1 1.7942 -12.4854 2.0544 40 1 0.5570 -13.4520 1.2163 41 1 2.5901 -13.2041 -0.1816 42 1 1.1939 -12.3997 -0.9371 43 1 4.2154 -11.7313 0.9923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598238780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:17 Heat of formation + Delta-G solvation = -132.260048 kcal Electronic energy + Delta-G solvation = -20413.575819 eV Core-core repulsion = 17263.825435 eV Total energy + Delta-G solvation = -3149.750384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.86124 -38.92959 -35.70277 -34.95304 -33.39423 -32.57902 -30.89552 -30.20927 -28.08023 -25.59511 -23.76504 -22.70822 -21.44444 -21.06402 -20.05669 -19.39168 -17.16862 -16.79517 -16.10784 -15.68296 -15.45911 -15.38147 -14.79019 -14.52513 -14.37697 -14.27913 -13.45065 -13.18330 -13.04052 -12.74134 -12.54695 -12.20798 -12.08190 -11.82457 -11.62940 -11.49133 -11.13848 -11.10741 -10.88509 -10.80456 -10.75128 -10.58688 -10.18258 -9.99344 -9.89999 -9.61345 -9.12955 -8.94370 -8.66567 -8.27980 -5.92362 -3.96680 3.34742 3.37003 3.41236 3.43051 3.63592 3.92743 4.34515 4.40218 4.50808 4.54227 4.79743 4.80000 5.03990 5.08939 5.16469 5.20458 5.27371 5.31814 5.42276 5.47907 5.58538 5.61517 5.65417 5.72808 5.86659 5.91567 5.92682 6.00024 6.11010 6.19628 6.28836 6.30608 6.32023 6.83659 6.95807 7.35073 7.78278 7.91544 7.99038 8.11843 8.43226 8.87254 9.12139 9.66504 11.18608 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.051924 B = 0.002649 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.119846 B =10568.297968 C =10889.924688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.537 6.537 13 N -0.745 5.745 14 C 0.117 3.883 15 C -0.121 4.121 16 C -0.075 4.075 17 H 0.082 0.918 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.153 4.153 22 C 0.111 3.889 23 H 0.053 0.947 24 O -0.559 6.559 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.396 0.604 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.930 -27.517 0.264 28.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.296 3.704 12 O -0.412 6.412 13 N -0.399 5.399 14 C -0.007 4.007 15 C -0.159 4.159 16 C -0.094 4.094 17 H 0.101 0.899 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.152 4.152 21 C -0.190 4.190 22 C 0.052 3.948 23 H 0.071 0.929 24 O -0.364 6.364 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.230 0.770 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.492 -26.857 0.422 27.416 hybrid contribution 1.241 0.306 -0.255 1.304 sum 6.734 -26.551 0.167 27.392 Atomic orbital electron populations 1.69995 1.06055 1.26647 1.50204 1.25031 0.94832 0.99214 0.95354 0.86647 0.79531 0.83181 0.78527 1.20269 1.21303 1.20254 1.21201 0.92893 0.91066 1.51375 0.92667 1.18892 0.93196 0.89378 0.98593 1.21860 1.00691 0.92068 1.02409 1.21551 0.88651 0.85726 0.74454 1.90661 1.14515 1.87719 1.48350 1.46211 1.10023 1.05721 1.77924 1.21321 0.94700 0.82693 1.01974 1.21749 0.98120 0.92964 1.03078 1.21112 0.95997 0.92975 0.99269 0.89949 1.21600 0.98943 0.97193 0.97582 1.21542 0.97693 0.94783 1.01760 1.21439 0.98135 0.98022 0.97646 1.22251 1.00047 0.97667 0.99070 1.21783 0.89937 0.94299 0.88793 0.92886 1.86547 1.46777 1.55112 1.47960 0.92920 0.95860 0.95839 0.90292 0.90336 0.77013 0.91737 0.92202 0.91633 0.90457 0.90958 0.91471 0.91973 0.92174 0.91397 0.92448 0.91931 0.91095 0.78059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.91 13.29 55.43 0.74 -27.17 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -15.26 9.11 -34.44 -0.31 -15.57 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.74 5.64 -27.88 -0.16 -2.90 16 11 C 0.51 10.23 7.83 -10.98 -0.09 10.15 16 12 O -0.54 -13.21 15.98 5.55 0.09 -13.12 16 13 N -0.74 -11.04 5.56 -60.30 -0.33 -11.38 16 14 C 0.12 1.53 5.43 -4.04 -0.02 1.51 16 15 C -0.12 -1.18 4.58 -26.73 -0.12 -1.30 16 16 C -0.07 -0.64 2.02 -90.62 -0.18 -0.82 16 17 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.12 -1.07 4.81 -26.73 -0.13 -1.19 16 19 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 20 C -0.11 -0.79 5.78 -26.73 -0.15 -0.94 16 21 C -0.15 -0.92 5.64 -26.73 -0.15 -1.08 16 22 C 0.11 0.78 3.21 -26.73 -0.09 0.70 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 O -0.56 -4.18 11.39 -35.23 -0.40 -4.58 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.08 1.52 8.14 -51.92 -0.42 1.09 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.40 4.67 8.47 -40.82 -0.35 4.32 16 31 H 0.06 0.92 6.57 -51.93 -0.34 0.58 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.08 0.80 7.84 -51.93 -0.41 0.39 16 35 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 36 H 0.07 0.68 6.57 -51.93 -0.34 0.34 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.50 7.68 -51.93 -0.40 0.10 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.37 1.40 9.08 45.56 0.41 1.81 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -35.14 342.46 -8.40 -43.54 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.85 Total: 0.64 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.78 Total: -10.06 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.40 Total: -38.55 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.31 Total: -17.69 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.14 -8.40 -43.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598238780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.717 kcal (2) G-P(sol) polarization free energy of solvation -35.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds