Wall clock time and date at job start Mon Mar 30 2020 01:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00007 * 2 1 4 4 H 1.48498 * 109.47039 * 239.99103 * 3 2 1 5 5 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47130 * 119.99821 * 3 2 1 7 7 C 1.37876 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47306 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.47324 * 55.00182 * 16 15 14 18 18 C 1.53001 * 109.47212 * 294.99759 * 16 15 14 19 19 C 1.53003 * 109.47346 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.46716 * 60.00298 * 19 18 16 21 21 C 1.53001 * 109.46969 * 299.99932 * 20 19 18 22 22 C 1.52998 * 109.47212 * 60.00143 * 21 20 19 23 23 H 1.09003 * 109.46784 * 179.97438 * 22 21 20 24 24 O 1.42901 * 109.47267 * 59.99982 * 22 21 20 25 25 H 0.97008 * 119.99515 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 27 27 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 28 28 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 29 29 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 30 30 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 31 31 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 32 32 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 33 33 H 1.09009 * 109.47378 * 299.99899 * 15 14 13 34 34 H 1.08993 * 109.47209 * 59.99808 * 15 14 13 35 35 H 1.08993 * 109.46987 * 300.00394 * 18 16 15 36 36 H 1.09005 * 109.46913 * 60.00240 * 18 16 15 37 37 H 1.08998 * 109.46727 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.47032 * 300.00387 * 19 18 16 39 39 H 1.09001 * 109.46869 * 59.99928 * 20 19 18 40 40 H 1.08995 * 109.46612 * 179.97438 * 20 19 18 41 41 H 1.08999 * 109.46748 * 180.02562 * 21 20 19 42 42 H 1.08993 * 109.46987 * 299.99750 * 21 20 19 43 43 H 0.96699 * 114.00414 * 59.99450 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 -0.0001 12 8 0.2788 -4.9671 0.0000 13 7 2.1655 -6.1344 0.0055 14 6 1.4330 -7.4030 0.0109 15 6 2.4271 -8.5660 0.0159 16 6 1.6621 -9.8909 0.0210 17 1 0.9703 -9.9143 -0.8210 18 6 0.8787 -10.0226 1.3286 19 6 0.1132 -11.3473 1.3334 20 6 1.1024 -12.5083 1.2124 21 6 1.8857 -12.3767 -0.0952 22 6 2.6512 -11.0520 -0.1000 23 1 3.2096 -10.9585 -1.0314 24 8 3.5583 -11.0219 1.0038 25 1 -0.4850 0.8402 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8719 -3.6043 -0.8894 30 1 3.1355 -6.1343 0.0057 31 1 0.8060 -7.4568 0.9009 32 1 0.8066 -7.4648 -0.8790 33 1 3.0539 -8.5121 -0.8743 34 1 3.0538 -8.5044 0.9056 35 1 1.5706 -9.9992 2.1705 36 1 0.1737 -9.1957 1.4146 37 1 -0.4445 -11.4412 2.2652 38 1 -0.5787 -11.3702 0.4915 39 1 1.7942 -12.4854 2.0544 40 1 0.5570 -13.4520 1.2163 41 1 2.5901 -13.2041 -0.1816 42 1 1.1939 -12.3997 -0.9371 43 1 4.2154 -11.7313 0.9923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598238780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:17 Heat of formation + Delta-G solvation = -158.031047 kcal Electronic energy + Delta-G solvation = -20414.693333 eV Core-core repulsion = 17263.825435 eV Total energy + Delta-G solvation = -3150.867899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80846 -40.19887 -36.67430 -35.78327 -35.52987 -33.68193 -32.82500 -30.79327 -29.21842 -27.42585 -24.81643 -23.64198 -22.97340 -21.95679 -21.07648 -20.55387 -18.79191 -17.70337 -17.41642 -17.09883 -16.77798 -16.49512 -16.24234 -15.67938 -15.50567 -15.08374 -14.70511 -14.41873 -14.16221 -13.95248 -13.67495 -13.50407 -13.23645 -13.12480 -12.77424 -12.56869 -12.49848 -12.43032 -12.25962 -11.90620 -11.77706 -11.63615 -11.53285 -11.39943 -11.32136 -10.89730 -10.67703 -10.56040 -10.49563 -10.02970 -8.17619 -6.32048 1.42141 1.47102 1.54833 1.72377 2.28255 2.46005 3.15026 3.42699 3.69075 3.80160 3.93241 4.03802 4.12997 4.14722 4.35731 4.41873 4.44959 4.51009 4.54874 4.56628 4.62030 4.66112 4.75156 4.90139 4.97158 5.02777 5.07633 5.17081 5.19752 5.29589 5.30894 5.38259 5.44252 5.47678 5.54765 5.61172 5.63380 5.85693 6.17871 6.63837 6.86345 7.01920 7.36276 7.38620 8.95012 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.051924 B = 0.002649 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.119846 B =10568.297968 C =10889.924688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.042 3.958 10 C -0.119 4.119 11 C 0.508 3.492 12 O -0.592 6.592 13 N -0.719 5.719 14 C 0.116 3.884 15 C -0.106 4.106 16 C -0.077 4.077 17 H 0.086 0.914 18 C -0.114 4.114 19 C -0.121 4.121 20 C -0.113 4.113 21 C -0.149 4.149 22 C 0.114 3.886 23 H 0.066 0.934 24 O -0.576 6.576 25 H 0.263 0.737 26 H -0.018 1.018 27 H -0.019 1.019 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.416 0.584 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.834 -28.524 -0.241 30.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.095 0.905 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.296 3.704 12 O -0.473 6.473 13 N -0.372 5.372 14 C -0.007 4.007 15 C -0.144 4.144 16 C -0.096 4.096 17 H 0.104 0.896 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.150 4.150 21 C -0.187 4.187 22 C 0.056 3.944 23 H 0.084 0.916 24 O -0.383 6.383 25 H 0.072 0.928 26 H 0.000 1.000 27 H -0.001 1.001 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.253 0.747 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 8.477 -27.925 -0.083 29.183 hybrid contribution 0.312 0.547 -0.071 0.634 sum 8.789 -27.378 -0.154 28.754 Atomic orbital electron populations 1.70183 1.08366 1.27890 1.51432 1.26175 0.95752 1.04057 0.94610 0.85344 0.78023 0.77184 0.79508 1.18608 1.21322 1.18665 1.21697 0.94022 0.91603 1.50892 0.90534 1.18691 0.93739 0.92551 0.94631 1.21640 0.99298 0.90102 1.04860 1.21384 0.87833 0.86942 0.74236 1.90647 1.16794 1.88493 1.51319 1.45942 1.11020 1.04867 1.75403 1.21450 0.95472 0.82835 1.00961 1.21644 0.97219 0.91860 1.03683 1.21148 0.96470 0.93176 0.98814 0.89590 1.21547 0.98522 0.97380 0.97728 1.21551 0.97956 0.94630 1.01738 1.21418 0.97839 0.97716 0.98057 1.22236 1.00251 0.97709 0.98499 1.21728 0.89727 0.93810 0.89184 0.91634 1.86507 1.47391 1.56249 1.48190 0.92842 0.99985 1.00076 0.87792 0.87657 0.74694 0.93186 0.92965 0.90002 0.90671 0.92153 0.93282 0.92286 0.91960 0.92004 0.91573 0.90169 0.90775 0.76152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.63 13.29 21.45 0.28 -60.34 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 3 Si 0.98 44.86 29.54 68.60 2.03 46.89 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.54 -31.59 9.11 25.60 0.23 -31.35 16 8 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 9 C 0.04 2.38 4.26 29.85 0.13 2.51 16 10 C -0.12 -4.94 5.64 29.85 0.17 -4.77 16 11 C 0.51 20.58 7.83 87.66 0.69 21.27 16 12 O -0.59 -30.45 15.98 -3.04 -0.05 -30.50 16 13 N -0.72 -20.47 5.56 -463.07 -2.57 -23.04 16 14 C 0.12 2.99 5.43 86.38 0.47 3.46 16 15 C -0.11 -1.88 4.58 30.59 0.14 -1.74 16 16 C -0.08 -1.21 2.02 -10.79 -0.02 -1.24 16 17 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 18 C -0.11 -2.09 4.81 30.60 0.15 -1.94 16 19 C -0.12 -1.84 5.92 30.60 0.18 -1.66 16 20 C -0.11 -1.36 5.78 30.60 0.18 -1.18 16 21 C -0.15 -1.43 5.64 30.59 0.17 -1.26 16 22 C 0.11 1.33 3.21 30.59 0.10 1.43 16 23 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 24 O -0.58 -7.27 11.39 -148.98 -1.70 -8.97 16 25 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 26 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 27 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 28 H 0.10 3.79 8.14 -2.38 -0.02 3.77 16 29 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 30 H 0.42 8.68 8.47 -92.71 -0.79 7.90 16 31 H 0.05 1.46 6.57 -2.39 -0.02 1.45 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.07 1.41 7.84 -2.39 -0.02 1.39 16 35 H 0.06 1.24 7.68 -2.39 -0.02 1.22 16 36 H 0.05 1.05 6.57 -2.38 -0.02 1.03 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.83 7.68 -2.39 -0.02 0.81 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.39 1.90 9.08 -74.06 -0.67 1.23 16 Total: -1.00 -79.34 342.46 0.56 -78.77 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -0.47 Total: 13.73 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 3.04 Total: -16.53 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.29 Total: -83.39 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -1.75 Total: -39.47 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -79.34 0.56 -78.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598238780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.259 kcal (2) G-P(sol) polarization free energy of solvation -79.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds