Wall clock time and date at job start Mon Mar 30 2020 01:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99793 * 179.97438 * 12 11 10 14 14 H 1.08996 * 108.78426 * 326.58891 * 13 12 11 15 15 C 1.54057 * 108.81237 * 85.00040 * 13 12 11 16 16 C 1.50481 * 112.49882 * 162.58262 * 15 13 12 17 17 C 1.54238 * 108.51298 * 265.84502 * 16 15 13 18 18 C 1.45550 * 112.40774 * 79.98218 * 17 16 15 19 19 C 1.54232 * 112.40886 * 298.06404 * 18 17 16 20 20 C 1.50480 * 108.52130 * 79.98429 * 19 18 17 21 21 H 1.08997 * 108.87400 * 26.63205 * 20 19 18 22 22 C 1.50700 * 108.87388 * 145.07327 * 20 19 18 23 23 O 1.20831 * 119.99726 * 122.97453 * 22 20 19 24 24 O 1.34231 * 120.00440 * 302.96812 * 22 20 19 25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 31 31 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 32 32 H 1.00898 * 110.99877 * 303.95043 * 12 11 10 33 33 H 1.09003 * 108.87444 * 283.35357 * 15 13 12 34 34 H 1.08994 * 108.88116 * 41.90200 * 15 13 12 35 35 H 1.08995 * 109.62699 * 25.55168 * 16 15 13 36 36 H 1.08994 * 109.63131 * 146.13850 * 16 15 13 37 37 H 1.09001 * 108.89717 * 200.73843 * 17 16 15 38 38 H 1.09004 * 108.89798 * 319.32871 * 17 16 15 39 39 H 1.09001 * 108.88987 * 58.82105 * 18 17 16 40 40 H 1.08999 * 108.89174 * 177.30664 * 18 17 16 41 41 H 1.09005 * 109.62700 * 199.69235 * 19 18 17 42 42 H 1.08997 * 109.62818 * 320.27779 * 19 18 17 43 43 H 0.96698 * 117.00018 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4346 -6.1037 0.0005 13 6 1.7343 -7.3950 0.0005 14 1 0.8095 -7.2927 0.5684 15 6 1.3863 -7.7715 -1.4523 16 6 1.0546 -9.2313 -1.6052 17 6 2.3356 -9.9837 -2.0196 18 6 3.2108 -10.2539 -0.8885 19 6 3.7120 -8.9621 -0.2112 20 6 2.6259 -8.4438 0.6923 21 1 2.0041 -9.2800 1.0117 22 6 3.2601 -7.8189 1.9082 23 8 3.0249 -6.6672 2.1878 24 8 4.0863 -8.5418 2.6807 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 0.8531 -5.0451 0.8897 31 1 0.8537 -5.0446 -0.8902 32 1 3.0700 -6.0366 -0.7804 33 1 0.5294 -7.1796 -1.7743 34 1 2.2373 -7.5359 -2.0912 35 1 0.6892 -9.6250 -0.6568 36 1 0.2922 -9.3550 -2.3743 37 1 2.0551 -10.9298 -2.4827 38 1 2.8785 -9.3817 -2.7483 39 1 2.6663 -10.8487 -0.1551 40 1 4.0706 -10.8265 -1.2364 41 1 4.6043 -9.1790 0.3761 42 1 3.9429 -8.2159 -0.9714 43 1 4.4687 -8.0978 3.4499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:47 Heat of formation + Delta-G solvation = -110.550566 kcal Electronic energy + Delta-G solvation = -21388.118684 eV Core-core repulsion = 18239.309693 eV Total energy + Delta-G solvation = -3148.808990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.59357 -38.66524 -36.17540 -35.48448 -33.55239 -32.56259 -31.82250 -29.71407 -26.14759 -25.59628 -23.98117 -22.35920 -22.05191 -20.70191 -20.10773 -18.96680 -17.75073 -16.90595 -16.25237 -15.63839 -15.49062 -14.93030 -14.70194 -14.46759 -14.30144 -13.95989 -13.52997 -13.05094 -12.96561 -12.60286 -12.39475 -12.16252 -11.95342 -11.68463 -11.35897 -11.18829 -11.07039 -10.96523 -10.80570 -10.75169 -10.58035 -10.51455 -10.45199 -10.35000 -9.90004 -9.55971 -9.22103 -8.97096 -8.26599 -7.82318 -5.92288 -3.93787 2.59145 3.17043 3.38503 3.42037 3.45342 4.31956 4.38870 4.48039 4.53956 4.77400 4.82684 4.93083 5.03553 5.12178 5.16564 5.42003 5.43281 5.47893 5.65963 5.71763 5.74006 5.83309 5.88655 5.91113 5.94761 6.05318 6.07384 6.10617 6.15972 6.22914 6.47968 6.76335 6.88130 6.92865 7.27382 7.49451 7.76664 7.79474 7.95578 8.09362 8.25622 8.53290 9.13324 9.69501 11.19259 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026347 B = 0.003775 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.464563 B = 7415.510560 C = 8053.239325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.104 4.104 11 C 0.069 3.931 12 N -0.666 5.666 13 C 0.100 3.900 14 H 0.078 0.922 15 C -0.145 4.145 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.110 4.110 20 C -0.060 4.060 21 H 0.099 0.901 22 C 0.464 3.536 23 O -0.456 6.456 24 O -0.534 6.534 25 H 0.260 0.740 26 H 0.012 0.988 27 H 0.015 0.985 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.019 0.981 32 H 0.329 0.671 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.256 -24.016 -1.307 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.059 4.059 12 N -0.295 5.295 13 C -0.011 4.011 14 H 0.097 0.903 15 C -0.185 4.185 16 C -0.154 4.154 17 C -0.158 4.158 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.079 4.079 21 H 0.117 0.883 22 C 0.302 3.698 23 O -0.337 6.337 24 O -0.348 6.348 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.147 0.853 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 4.935 -23.701 -0.878 24.225 hybrid contribution 0.305 1.243 -0.420 1.347 sum 5.240 -22.459 -1.298 23.098 Atomic orbital electron populations 1.69966 1.06040 1.26541 1.51201 1.25028 0.94843 0.99186 0.95487 0.86662 0.79572 0.83198 0.78593 1.20311 1.21341 1.20246 1.21242 0.93007 0.91140 1.50117 0.92798 1.19053 0.94049 0.91428 0.96955 1.21576 0.99090 0.93033 1.00518 1.22032 0.93908 0.90693 0.99280 1.60787 1.19675 1.00452 1.48596 1.21849 0.95713 0.89461 0.94106 0.90345 1.22113 1.02180 0.96908 0.97252 1.21320 0.97297 0.95156 1.01644 1.20531 0.96339 1.00504 0.98390 1.20480 0.99458 0.97159 0.98195 1.21357 0.97284 0.97478 0.98686 1.20901 0.97321 0.98566 0.91158 0.88276 1.23291 0.77190 0.85142 0.84142 1.90852 1.57163 1.16983 1.68734 1.84499 1.60206 1.49051 1.40994 0.93069 0.96967 0.96642 0.92490 0.94065 0.91647 0.96284 0.85303 0.91555 0.91585 0.91586 0.91856 0.92333 0.92050 0.91977 0.91976 0.90592 0.90847 0.73862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.29 55.43 0.74 -27.16 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -15.35 9.11 -34.44 -0.31 -15.67 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.10 -2.33 5.41 -26.73 -0.14 -2.47 16 11 C 0.07 1.28 5.46 -3.82 -0.02 1.26 16 12 N -0.67 -10.18 3.61 -105.55 -0.38 -10.56 16 13 C 0.10 1.20 1.93 -66.60 -0.13 1.07 16 14 H 0.08 1.04 7.73 -51.93 -0.40 0.63 16 15 C -0.15 -1.47 4.63 -27.44 -0.13 -1.59 16 16 C -0.12 -0.93 5.61 -27.34 -0.15 -1.08 16 17 C -0.12 -0.86 5.26 -29.60 -0.16 -1.01 16 18 C -0.12 -0.82 5.26 -29.60 -0.16 -0.97 16 19 C -0.11 -0.97 5.11 -27.35 -0.14 -1.11 16 20 C -0.06 -0.62 1.98 -92.48 -0.18 -0.80 16 21 H 0.10 0.87 6.63 -51.93 -0.34 0.53 16 22 C 0.46 5.94 7.33 36.01 0.26 6.21 16 23 O -0.46 -7.82 14.95 -18.75 -0.28 -8.10 16 24 O -0.53 -5.41 12.78 -39.26 -0.50 -5.91 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 31 H 0.02 0.34 7.78 -51.93 -0.40 -0.06 16 32 H 0.33 4.75 8.01 -39.29 -0.31 4.44 16 33 H 0.07 0.74 7.91 -51.93 -0.41 0.33 16 34 H 0.07 0.66 6.18 -51.93 -0.32 0.34 16 35 H 0.07 0.51 6.98 -51.93 -0.36 0.15 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.46 7.46 -51.93 -0.39 0.07 16 39 H 0.06 0.42 7.47 -51.93 -0.39 0.03 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.68 7.23 -51.93 -0.38 0.31 16 42 H 0.07 0.69 6.80 -51.93 -0.35 0.34 16 43 H 0.40 2.75 9.10 45.56 0.41 3.16 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -33.66 333.37 -8.48 -42.15 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.57 Total: 1.31 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -1.49 Total: -14.14 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.36 Total: -37.72 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.78 Total: -14.01 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.66 -8.48 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.402 kcal (2) G-P(sol) polarization free energy of solvation -33.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds