Wall clock time and date at job start Mon Mar 30 2020 01:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99793 * 179.97438 * 12 11 10 14 14 H 1.08996 * 108.78426 * 326.58891 * 13 12 11 15 15 C 1.54057 * 108.81237 * 85.00040 * 13 12 11 16 16 C 1.50481 * 112.49882 * 162.58262 * 15 13 12 17 17 C 1.54238 * 108.51298 * 265.84502 * 16 15 13 18 18 C 1.45550 * 112.40774 * 79.98218 * 17 16 15 19 19 C 1.54232 * 112.40886 * 298.06404 * 18 17 16 20 20 C 1.50480 * 108.52130 * 79.98429 * 19 18 17 21 21 H 1.08997 * 108.87400 * 26.63205 * 20 19 18 22 22 C 1.50700 * 108.87388 * 145.07327 * 20 19 18 23 23 O 1.20831 * 119.99726 * 122.97453 * 22 20 19 24 24 O 1.34231 * 120.00440 * 302.96812 * 22 20 19 25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 31 31 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 32 32 H 1.00898 * 110.99877 * 303.95043 * 12 11 10 33 33 H 1.09003 * 108.87444 * 283.35357 * 15 13 12 34 34 H 1.08994 * 108.88116 * 41.90200 * 15 13 12 35 35 H 1.08995 * 109.62699 * 25.55168 * 16 15 13 36 36 H 1.08994 * 109.63131 * 146.13850 * 16 15 13 37 37 H 1.09001 * 108.89717 * 200.73843 * 17 16 15 38 38 H 1.09004 * 108.89798 * 319.32871 * 17 16 15 39 39 H 1.09001 * 108.88987 * 58.82105 * 18 17 16 40 40 H 1.08999 * 108.89174 * 177.30664 * 18 17 16 41 41 H 1.09005 * 109.62700 * 199.69235 * 19 18 17 42 42 H 1.08997 * 109.62818 * 320.27779 * 19 18 17 43 43 H 0.96698 * 117.00018 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4346 -6.1037 0.0005 13 6 1.7343 -7.3950 0.0005 14 1 0.8095 -7.2927 0.5684 15 6 1.3863 -7.7715 -1.4523 16 6 1.0546 -9.2313 -1.6052 17 6 2.3356 -9.9837 -2.0196 18 6 3.2108 -10.2539 -0.8885 19 6 3.7120 -8.9621 -0.2112 20 6 2.6259 -8.4438 0.6923 21 1 2.0041 -9.2800 1.0117 22 6 3.2601 -7.8189 1.9082 23 8 3.0249 -6.6672 2.1878 24 8 4.0863 -8.5418 2.6807 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 0.8531 -5.0451 0.8897 31 1 0.8537 -5.0446 -0.8902 32 1 3.0700 -6.0366 -0.7804 33 1 0.5294 -7.1796 -1.7743 34 1 2.2373 -7.5359 -2.0912 35 1 0.6892 -9.6250 -0.6568 36 1 0.2922 -9.3550 -2.3743 37 1 2.0551 -10.9298 -2.4827 38 1 2.8785 -9.3817 -2.7483 39 1 2.6663 -10.8487 -0.1551 40 1 4.0706 -10.8265 -1.2364 41 1 4.6043 -9.1790 0.3761 42 1 3.9429 -8.2159 -0.9714 43 1 4.4687 -8.0978 3.4499 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:47 Heat of formation + Delta-G solvation = -132.294609 kcal Electronic energy + Delta-G solvation = -21389.061576 eV Core-core repulsion = 18239.309693 eV Total energy + Delta-G solvation = -3149.751883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.53786 -39.55712 -37.34452 -36.67934 -35.39598 -33.58499 -33.23902 -31.14167 -27.94651 -26.39949 -25.21611 -23.94495 -22.99020 -22.02313 -21.27893 -19.93311 -18.71898 -18.50671 -17.83402 -16.69913 -16.51195 -16.34174 -16.23737 -15.60806 -15.33162 -15.19247 -14.46536 -14.30074 -14.09401 -13.87928 -13.60438 -13.42689 -13.32758 -13.05653 -12.81710 -12.61198 -12.46603 -12.29738 -12.20039 -11.93552 -11.69980 -11.59523 -11.47735 -11.38785 -11.26799 -11.24654 -10.98720 -10.82071 -10.56482 -9.04733 -8.21272 -6.32860 1.37868 1.42060 1.50035 1.59440 2.31804 2.40014 3.11146 3.22264 3.63311 3.70880 4.02538 4.04007 4.17581 4.23649 4.32215 4.39479 4.43286 4.47485 4.65492 4.71141 4.74195 4.86461 4.96069 5.01057 5.05726 5.12742 5.15849 5.23045 5.25601 5.33095 5.38022 5.40907 5.49810 5.52941 5.58835 5.74234 5.83881 5.91495 6.13377 6.27853 6.57870 6.83164 7.33497 7.36083 8.90700 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026347 B = 0.003775 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.464563 B = 7415.510560 C = 8053.239325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.088 4.088 11 C 0.087 3.913 12 N -0.669 5.669 13 C 0.100 3.900 14 H 0.063 0.937 15 C -0.137 4.137 16 C -0.114 4.114 17 C -0.118 4.118 18 C -0.111 4.111 19 C -0.107 4.107 20 C -0.054 4.054 21 H 0.122 0.878 22 C 0.467 3.533 23 O -0.509 6.509 24 O -0.524 6.524 25 H 0.264 0.736 26 H -0.007 1.007 27 H -0.014 1.014 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.023 0.977 32 H 0.335 0.665 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.540 -25.447 -1.946 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.126 4.126 11 C -0.043 4.043 12 N -0.299 5.299 13 C -0.010 4.010 14 H 0.081 0.919 15 C -0.176 4.176 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.148 4.148 19 C -0.144 4.144 20 C -0.074 4.074 21 H 0.140 0.860 22 C 0.308 3.692 23 O -0.394 6.394 24 O -0.339 6.339 25 H 0.073 0.927 26 H 0.011 0.989 27 H 0.004 0.996 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.153 0.847 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 6.244 -25.181 -1.512 25.988 hybrid contribution -0.100 1.628 -0.170 1.640 sum 6.145 -23.553 -1.682 24.400 Atomic orbital electron populations 1.70101 1.07832 1.27886 1.51586 1.26021 0.95836 1.03456 0.94577 0.85461 0.78276 0.77859 0.79212 1.18949 1.20492 1.19344 1.21659 0.93447 0.92481 1.50778 0.92467 1.18948 0.94363 0.93188 0.94519 1.21312 0.97907 0.93299 1.00039 1.21651 0.93752 0.90284 0.98575 1.60666 1.19334 1.00813 1.49114 1.21915 0.95284 0.88340 0.95481 0.91865 1.22023 1.01639 0.98475 0.95498 1.21318 0.98151 0.93438 1.02283 1.20511 0.95654 1.00940 0.98397 1.20454 0.99989 0.96150 0.98217 1.21343 0.96634 0.98249 0.98192 1.20954 0.97774 0.98242 0.90403 0.86013 1.23765 0.76537 0.84495 0.84386 1.90848 1.59109 1.19240 1.70228 1.84464 1.59425 1.48556 1.41410 0.92698 0.98895 0.99564 0.93990 0.93224 0.93456 0.95909 0.84666 0.92954 0.91356 0.90964 0.91244 0.90894 0.92399 0.91030 0.90766 0.90521 0.91544 0.72154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.07 13.29 21.45 0.28 -58.79 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 4 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.55 -33.09 9.11 25.60 0.23 -32.86 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.56 4.97 29.85 0.15 1.71 16 10 C -0.09 -4.04 5.41 30.59 0.17 -3.87 16 11 C 0.09 3.32 5.46 86.30 0.47 3.80 16 12 N -0.67 -20.67 3.61 -487.87 -1.76 -22.43 16 13 C 0.10 2.37 1.93 45.63 0.09 2.46 16 14 H 0.06 1.69 7.73 -2.39 -0.02 1.67 16 15 C -0.14 -2.63 4.63 30.14 0.14 -2.49 16 16 C -0.11 -1.56 5.61 30.20 0.17 -1.39 16 17 C -0.12 -1.32 5.26 28.74 0.15 -1.17 16 18 C -0.11 -1.20 5.26 28.74 0.15 -1.05 16 19 C -0.11 -1.63 5.11 30.20 0.15 -1.48 16 20 C -0.05 -1.04 1.98 -12.00 -0.02 -1.06 16 21 H 0.12 1.83 6.63 -2.39 -0.02 1.81 16 22 C 0.47 11.59 7.33 71.24 0.52 12.11 16 23 O -0.51 -17.70 14.95 21.95 0.33 -17.38 16 24 O -0.52 -9.75 12.78 -51.43 -0.66 -10.41 16 25 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 28 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 30 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 31 H 0.02 0.85 7.78 -2.39 -0.02 0.83 16 32 H 0.33 9.59 8.01 -89.70 -0.72 8.87 16 33 H 0.05 1.15 7.91 -2.39 -0.02 1.13 16 34 H 0.07 1.29 6.18 -2.39 -0.01 1.27 16 35 H 0.07 0.92 6.98 -2.39 -0.02 0.90 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 0.71 7.46 -2.38 -0.02 0.70 16 39 H 0.07 0.68 7.47 -2.39 -0.02 0.66 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 1.19 7.23 -2.38 -0.02 1.18 16 42 H 0.07 1.13 6.80 -2.39 -0.02 1.11 16 43 H 0.42 5.14 9.10 -74.06 -0.67 4.46 16 Total: -1.00 -73.85 333.37 2.66 -71.19 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -0.39 Total: 14.67 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 2.83 Total: -24.92 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -1.48 Total: -81.22 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.33 Total: -27.79 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -73.85 2.66 -71.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.106 kcal (2) G-P(sol) polarization free energy of solvation -73.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds