Wall clock time and date at job start Mon Mar 30 2020 01:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00127 * 2 1 4 4 H 1.48500 * 109.47519 * 270.00336 * 3 2 1 5 5 H 1.48507 * 109.47326 * 30.00231 * 3 2 1 6 6 H 1.48502 * 109.47234 * 149.99894 * 3 2 1 7 7 C 1.37881 * 119.99635 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99754 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99842 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47223 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47381 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47282 * 179.97438 * 11 10 9 13 13 C 1.46906 * 110.99927 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46897 * 85.00129 * 13 12 11 15 15 C 1.52997 * 109.47317 * 60.00033 * 14 13 12 16 16 C 1.53000 * 109.47060 * 59.99960 * 15 14 13 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47337 * 185.00101 * 17 16 15 19 19 O 1.20836 * 119.99695 * 359.97438 * 18 17 16 20 20 O 1.34222 * 120.00130 * 179.97438 * 18 17 16 21 21 C 1.53002 * 109.47233 * 299.99657 * 16 15 14 22 22 C 1.52997 * 109.46817 * 60.00194 * 21 16 15 23 23 H 0.97009 * 119.99953 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47375 * 59.99549 * 9 7 2 25 25 H 1.09003 * 109.46979 * 299.99844 * 9 7 2 26 26 H 1.09005 * 109.47215 * 59.99571 * 10 9 7 27 27 H 1.09003 * 109.47113 * 299.99881 * 10 9 7 28 28 H 1.09001 * 109.47210 * 60.00216 * 11 10 9 29 29 H 1.09003 * 109.47043 * 300.00099 * 11 10 9 30 30 H 1.00900 * 110.99890 * 303.95298 * 12 11 10 31 31 H 1.09000 * 109.47033 * 324.99876 * 13 12 11 32 32 H 1.08996 * 109.46929 * 299.99137 * 14 13 12 33 33 H 1.09002 * 109.46716 * 179.97438 * 14 13 12 34 34 H 1.09002 * 109.47153 * 299.99641 * 15 14 13 35 35 H 1.09001 * 109.46832 * 179.97438 * 15 14 13 36 36 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 37 37 H 1.09008 * 109.46864 * 304.99696 * 17 16 15 38 38 H 1.09000 * 109.47679 * 64.99728 * 17 16 15 39 39 H 0.96709 * 116.99712 * 180.02562 * 20 18 17 40 40 H 1.08993 * 109.47662 * 180.02562 * 21 16 15 41 41 H 1.09002 * 109.47075 * 300.00932 * 21 16 15 42 42 H 1.09002 * 109.47153 * 60.00231 * 22 21 16 43 43 H 1.09001 * 109.47289 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6366 -0.0001 11 6 5.5514 -2.6367 -0.0001 12 7 6.0410 -4.0217 0.0004 13 6 7.5095 -4.0610 0.0009 14 6 8.0221 -3.9486 1.4381 15 6 7.4804 -5.1160 2.2656 16 6 7.9556 -6.4366 1.6564 17 6 7.4134 -7.6040 2.4835 18 6 7.9801 -8.8979 1.9582 19 8 8.7394 -8.8873 1.0183 20 8 7.6414 -10.0619 2.5344 21 6 7.4429 -6.5491 0.2192 22 6 7.9846 -5.3817 -0.6082 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6809 0.8905 25 1 3.8751 -0.6798 -0.8895 26 1 3.6583 -3.1503 -0.8903 27 1 3.6577 -3.1507 0.8897 28 1 5.9148 -2.1230 0.8899 29 1 5.9147 -2.1228 -0.8901 30 1 5.6655 -4.5377 0.7820 31 1 7.8954 -3.2293 -0.5886 32 1 7.6837 -3.0077 1.8720 33 1 9.1117 -3.9782 1.4386 34 1 6.3908 -5.0869 2.2652 35 1 7.8460 -5.0361 3.2893 36 1 9.0451 -6.4657 1.6568 37 1 7.7045 -7.4767 3.5262 38 1 6.3261 -7.6273 2.4101 39 1 8.0306 -10.8653 2.1627 40 1 7.7810 -7.4900 -0.2146 41 1 6.3533 -6.5199 0.2188 42 1 9.0742 -5.4108 -0.6078 43 1 7.6191 -5.4615 -1.6320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:18 Heat of formation + Delta-G solvation = -128.083532 kcal Electronic energy + Delta-G solvation = -20775.750226 eV Core-core repulsion = 17626.180949 eV Total energy + Delta-G solvation = -3149.569277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.78259 -39.28350 -36.55311 -35.52766 -33.64409 -32.14348 -30.85811 -30.32784 -27.62213 -25.90458 -22.96001 -22.67484 -22.18438 -20.75145 -20.05037 -19.05791 -18.30467 -16.84243 -16.71719 -16.24588 -16.02660 -15.01361 -14.76049 -14.37468 -14.15881 -14.09919 -13.64895 -13.49397 -12.86879 -12.64012 -12.40051 -12.27179 -12.01840 -11.93832 -11.85196 -11.72947 -11.43483 -11.19347 -10.97555 -10.92453 -10.79031 -10.49339 -10.21907 -10.10857 -9.91873 -9.69183 -9.50381 -9.14068 -8.51131 -8.11745 -6.01603 -3.99100 1.91785 2.74658 3.32344 3.39355 3.43091 4.29993 4.42893 4.47514 4.55191 4.60889 4.86430 4.95500 5.10017 5.23795 5.24961 5.27815 5.32433 5.42274 5.45113 5.55676 5.58905 5.74429 5.77743 5.89073 5.95622 5.99614 6.05201 6.14349 6.23071 6.27306 6.33282 6.41893 6.60562 6.64404 6.95835 7.30511 7.39705 7.48479 7.59652 7.67259 7.83548 8.58020 9.04187 9.61222 11.12048 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032277 B = 0.003135 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.282662 B = 8929.676812 C = 9303.493458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.056 3.944 12 N -0.683 5.683 13 C 0.084 3.916 14 C -0.149 4.149 15 C -0.115 4.115 16 C -0.075 4.075 17 C -0.112 4.112 18 C 0.478 3.522 19 O -0.511 6.511 20 O -0.521 6.521 21 C -0.121 4.121 22 C -0.102 4.102 23 H 0.262 0.738 24 H 0.012 0.988 25 H 0.011 0.989 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.338 0.662 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.408 0.592 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.587 -16.001 5.715 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.073 4.073 12 N -0.315 5.315 13 C -0.027 4.027 14 C -0.188 4.188 15 C -0.153 4.153 16 C -0.094 4.094 17 C -0.150 4.150 18 C 0.320 3.680 19 O -0.399 6.399 20 O -0.333 6.333 21 C -0.158 4.158 22 C -0.140 4.140 23 H 0.072 0.928 24 H 0.031 0.969 25 H 0.029 0.971 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.158 0.842 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.267 0.733 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.405 -15.584 4.934 25.373 hybrid contribution 0.773 0.683 0.732 1.264 sum 20.178 -14.901 5.666 25.716 Atomic orbital electron populations 1.69925 1.06302 1.26806 1.51426 1.25048 0.94735 0.99181 0.94672 0.86761 0.80293 0.83619 0.78480 1.20310 1.21468 1.19099 1.21165 0.89581 0.94433 1.50437 0.91046 1.19538 0.97096 0.92382 0.96043 1.21435 0.91314 0.99539 1.01431 1.22173 0.97422 0.88048 0.99658 1.60709 1.06224 1.14644 1.49963 1.21574 0.88691 0.98047 0.94350 1.22169 1.01168 0.98183 0.97272 1.21571 1.01205 0.93649 0.98872 1.21046 1.01003 0.92054 0.95277 1.21527 1.03234 0.88343 1.01882 1.23635 0.78217 0.85779 0.80344 1.90711 1.34157 1.87605 1.27404 1.84558 1.69803 1.17792 1.61129 1.21692 1.01072 0.99345 0.93719 1.21462 0.99324 0.93621 0.99574 0.92801 0.96923 0.97095 0.92023 0.93197 0.95913 0.91643 0.84175 0.90747 0.91754 0.91626 0.91382 0.91723 0.90388 0.87738 0.87327 0.73292 0.90815 0.91335 0.92308 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.32 13.96 55.43 0.77 -27.54 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.01 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 10 C -0.10 -1.98 5.41 -26.73 -0.14 -2.12 16 11 C 0.06 0.90 5.48 -3.83 -0.02 0.88 16 12 N -0.68 -9.33 5.77 -106.72 -0.62 -9.94 16 13 C 0.08 0.96 2.86 -67.71 -0.19 0.77 16 14 C -0.15 -1.47 5.52 -26.73 -0.15 -1.62 16 15 C -0.12 -0.99 4.95 -26.73 -0.13 -1.12 16 16 C -0.08 -0.64 1.84 -90.62 -0.17 -0.81 16 17 C -0.11 -0.80 5.28 -27.88 -0.15 -0.94 16 18 C 0.48 4.10 8.05 36.01 0.29 4.38 16 19 O -0.51 -5.88 14.73 -18.76 -0.28 -6.16 16 20 O -0.52 -3.46 13.42 -39.24 -0.53 -3.98 16 21 C -0.12 -1.24 4.70 -26.73 -0.13 -1.36 16 22 C -0.10 -1.10 5.64 -26.73 -0.15 -1.25 16 23 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 24 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 25 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.02 0.36 7.43 -51.93 -0.39 -0.03 16 29 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 30 H 0.34 4.36 5.56 -39.29 -0.22 4.14 16 31 H 0.07 0.89 7.80 -51.93 -0.41 0.49 16 32 H 0.06 0.69 7.45 -51.93 -0.39 0.31 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.62 6.26 -51.93 -0.32 0.30 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.72 7.96 -51.93 -0.41 0.31 16 37 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.41 1.12 9.10 45.56 0.41 1.53 16 40 H 0.07 0.84 5.96 -51.93 -0.31 0.53 16 41 H 0.07 0.74 7.21 -51.93 -0.37 0.37 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 333.99 15.07 5.03 5.03 Total: -1.00 -33.11 333.99 -8.32 -41.43 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.56 Total: 0.99 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -1.48 Total: -17.16 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.16 Total: -37.48 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.80 Total: -10.14 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.11 -8.32 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.658 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds