Wall clock time and date at job start Mon Mar 30 2020 01:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00127 * 2 1 4 4 H 1.48500 * 109.47519 * 270.00336 * 3 2 1 5 5 H 1.48507 * 109.47326 * 30.00231 * 3 2 1 6 6 H 1.48502 * 109.47234 * 149.99894 * 3 2 1 7 7 C 1.37881 * 119.99635 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99754 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99842 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47223 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47381 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47282 * 179.97438 * 11 10 9 13 13 C 1.46906 * 110.99927 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46897 * 85.00129 * 13 12 11 15 15 C 1.52997 * 109.47317 * 60.00033 * 14 13 12 16 16 C 1.53000 * 109.47060 * 59.99960 * 15 14 13 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47337 * 185.00101 * 17 16 15 19 19 O 1.20836 * 119.99695 * 359.97438 * 18 17 16 20 20 O 1.34222 * 120.00130 * 179.97438 * 18 17 16 21 21 C 1.53002 * 109.47233 * 299.99657 * 16 15 14 22 22 C 1.52997 * 109.46817 * 60.00194 * 21 16 15 23 23 H 0.97009 * 119.99953 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47375 * 59.99549 * 9 7 2 25 25 H 1.09003 * 109.46979 * 299.99844 * 9 7 2 26 26 H 1.09005 * 109.47215 * 59.99571 * 10 9 7 27 27 H 1.09003 * 109.47113 * 299.99881 * 10 9 7 28 28 H 1.09001 * 109.47210 * 60.00216 * 11 10 9 29 29 H 1.09003 * 109.47043 * 300.00099 * 11 10 9 30 30 H 1.00900 * 110.99890 * 303.95298 * 12 11 10 31 31 H 1.09000 * 109.47033 * 324.99876 * 13 12 11 32 32 H 1.08996 * 109.46929 * 299.99137 * 14 13 12 33 33 H 1.09002 * 109.46716 * 179.97438 * 14 13 12 34 34 H 1.09002 * 109.47153 * 299.99641 * 15 14 13 35 35 H 1.09001 * 109.46832 * 179.97438 * 15 14 13 36 36 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 37 37 H 1.09008 * 109.46864 * 304.99696 * 17 16 15 38 38 H 1.09000 * 109.47679 * 64.99728 * 17 16 15 39 39 H 0.96709 * 116.99712 * 180.02562 * 20 18 17 40 40 H 1.08993 * 109.47662 * 180.02562 * 21 16 15 41 41 H 1.09002 * 109.47075 * 300.00932 * 21 16 15 42 42 H 1.09002 * 109.47153 * 60.00231 * 22 21 16 43 43 H 1.09001 * 109.47289 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6366 -0.0001 11 6 5.5514 -2.6367 -0.0001 12 7 6.0410 -4.0217 0.0004 13 6 7.5095 -4.0610 0.0009 14 6 8.0221 -3.9486 1.4381 15 6 7.4804 -5.1160 2.2656 16 6 7.9556 -6.4366 1.6564 17 6 7.4134 -7.6040 2.4835 18 6 7.9801 -8.8979 1.9582 19 8 8.7394 -8.8873 1.0183 20 8 7.6414 -10.0619 2.5344 21 6 7.4429 -6.5491 0.2192 22 6 7.9846 -5.3817 -0.6082 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6809 0.8905 25 1 3.8751 -0.6798 -0.8895 26 1 3.6583 -3.1503 -0.8903 27 1 3.6577 -3.1507 0.8897 28 1 5.9148 -2.1230 0.8899 29 1 5.9147 -2.1228 -0.8901 30 1 5.6655 -4.5377 0.7820 31 1 7.8954 -3.2293 -0.5886 32 1 7.6837 -3.0077 1.8720 33 1 9.1117 -3.9782 1.4386 34 1 6.3908 -5.0869 2.2652 35 1 7.8460 -5.0361 3.2893 36 1 9.0451 -6.4657 1.6568 37 1 7.7045 -7.4767 3.5262 38 1 6.3261 -7.6273 2.4101 39 1 8.0306 -10.8653 2.1627 40 1 7.7810 -7.4900 -0.2146 41 1 6.3533 -6.5199 0.2188 42 1 9.0742 -5.4108 -0.6078 43 1 7.6191 -5.4615 -1.6320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:18 Heat of formation + Delta-G solvation = -150.275816 kcal Electronic energy + Delta-G solvation = -20776.712556 eV Core-core repulsion = 17626.180949 eV Total energy + Delta-G solvation = -3150.531607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.45683 -40.11044 -37.28731 -36.72001 -35.22820 -33.76632 -31.83886 -31.49544 -28.72613 -27.35976 -24.07603 -23.55642 -23.38959 -21.85410 -21.33452 -19.91463 -18.94520 -18.90343 -17.47612 -17.06582 -16.89299 -16.35938 -16.12181 -15.62477 -15.19005 -15.11171 -14.78420 -14.69503 -14.20952 -13.80566 -13.62517 -13.41779 -13.14186 -12.90224 -12.76749 -12.70013 -12.57234 -12.45236 -12.33275 -11.99609 -11.77690 -11.69862 -11.50483 -11.43347 -11.32028 -11.20799 -10.97352 -10.82592 -10.75470 -9.19493 -8.28591 -6.32722 1.28697 1.36789 1.38397 1.50692 2.23613 2.37265 3.06756 3.31425 3.67757 3.84037 3.88744 4.12418 4.22348 4.29508 4.36197 4.41939 4.53244 4.56705 4.62873 4.67647 4.70466 4.73042 4.84793 4.89349 4.90815 5.02314 5.10432 5.14135 5.21608 5.22768 5.28336 5.39109 5.50746 5.53526 5.58880 5.64440 5.68008 5.74791 6.22427 6.32312 6.60903 6.75867 7.06265 7.31879 8.88518 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032277 B = 0.003135 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.282662 B = 8929.676812 C = 9303.493458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.533 4.533 8 H 0.029 0.971 9 C -0.010 4.010 10 C -0.090 4.090 11 C 0.070 3.930 12 N -0.689 5.689 13 C 0.084 3.916 14 C -0.145 4.145 15 C -0.112 4.112 16 C -0.068 4.068 17 C -0.112 4.112 18 C 0.480 3.520 19 O -0.546 6.546 20 O -0.519 6.519 21 C -0.117 4.117 22 C -0.099 4.099 23 H 0.266 0.734 24 H 0.020 0.980 25 H 0.017 0.983 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.032 0.968 29 H 0.065 0.935 30 H 0.343 0.657 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.128 0.872 38 H 0.117 0.883 39 H 0.425 0.575 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.772 -15.491 6.869 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.571 4.571 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.128 4.128 11 C -0.059 4.059 12 N -0.322 5.322 13 C -0.025 4.025 14 C -0.184 4.184 15 C -0.149 4.149 16 C -0.087 4.087 17 C -0.149 4.149 18 C 0.324 3.676 19 O -0.437 6.437 20 O -0.332 6.332 21 C -0.154 4.154 22 C -0.137 4.137 23 H 0.075 0.925 24 H 0.039 0.961 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.164 0.836 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.146 0.854 38 H 0.135 0.865 39 H 0.286 0.714 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 21.605 -15.118 6.100 27.065 hybrid contribution 0.023 0.379 0.358 0.522 sum 21.628 -14.739 6.458 26.958 Atomic orbital electron populations 1.70084 1.08389 1.28168 1.52832 1.26079 0.95660 1.03715 0.94122 0.85595 0.79506 0.77953 0.79192 1.19246 1.20959 1.16783 1.21537 0.92345 0.93026 1.50219 0.95250 1.19485 0.93695 0.95159 0.96412 1.21261 0.94239 0.96751 1.00587 1.21890 0.94306 0.89634 1.00083 1.60635 1.07859 1.13149 1.50538 1.21597 0.87114 0.98145 0.95693 1.22123 1.01885 0.98463 0.95968 1.21554 1.00847 0.92912 0.99629 1.20937 1.00667 0.92831 0.94236 1.21571 1.03578 0.87009 1.02741 1.23899 0.77432 0.86592 0.79648 1.90704 1.35895 1.88139 1.28987 1.84524 1.69626 1.18203 1.60882 1.21624 1.00442 0.98393 0.94978 1.21424 0.99802 0.93579 0.98879 0.92515 0.96130 0.96476 0.93567 0.93467 0.95001 0.91670 0.83621 0.91149 0.92302 0.90462 0.91865 0.89845 0.90800 0.85356 0.86463 0.71416 0.92111 0.92169 0.91417 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 2 C 0.00 0.03 5.47 84.66 0.46 0.49 16 3 Si 0.95 44.73 27.47 68.60 1.88 46.61 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.24 -10.52 6.54 99.48 0.65 -9.87 16 7 C -0.53 -31.48 9.66 25.60 0.25 -31.24 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.09 -3.56 5.41 30.59 0.17 -3.39 16 11 C 0.07 2.15 5.48 86.30 0.47 2.62 16 12 N -0.69 -17.91 5.77 -491.55 -2.83 -20.75 16 13 C 0.08 1.80 2.86 44.92 0.13 1.93 16 14 C -0.15 -2.52 5.52 30.59 0.17 -2.35 16 15 C -0.11 -1.63 4.95 30.59 0.15 -1.48 16 16 C -0.07 -1.03 1.84 -10.79 -0.02 -1.05 16 17 C -0.11 -1.33 5.28 29.85 0.16 -1.17 16 18 C 0.48 7.53 8.05 71.24 0.57 8.10 16 19 O -0.55 -12.21 14.73 21.93 0.32 -11.89 16 20 O -0.52 -5.97 13.42 -51.34 -0.69 -6.66 16 21 C -0.12 -2.29 4.70 30.59 0.14 -2.15 16 22 C -0.10 -2.03 5.64 30.60 0.17 -1.86 16 23 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 24 H 0.02 0.94 7.20 -2.38 -0.02 0.92 16 25 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 26 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.03 0.93 7.43 -2.39 -0.02 0.91 16 29 H 0.06 2.02 8.06 -2.39 -0.02 2.00 16 30 H 0.34 8.37 5.56 -89.69 -0.50 7.88 16 31 H 0.07 1.57 7.80 -2.39 -0.02 1.55 16 32 H 0.06 1.11 7.45 -2.39 -0.02 1.09 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.01 6.26 -2.39 -0.01 0.99 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 1.22 7.96 -2.39 -0.02 1.20 16 37 H 0.13 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.42 1.68 9.10 -74.05 -0.67 1.00 16 40 H 0.06 1.37 5.96 -2.39 -0.01 1.36 16 41 H 0.06 1.27 7.21 -2.39 -0.02 1.25 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -72.09 333.99 1.70 -70.40 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -0.23 Total: 14.77 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 2.95 Total: -31.88 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -2.54 Total: -81.35 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.37 Total: -18.54 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -72.09 1.70 -70.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.879 kcal (2) G-P(sol) polarization free energy of solvation -72.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds