Wall clock time and date at job start Mon Mar 30 2020 01:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86790 * 120.00374 * 2 1 4 4 H 1.48498 * 109.47365 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46993 * 299.99805 * 3 2 1 6 6 H 1.48499 * 109.47149 * 59.99790 * 3 2 1 7 7 C 1.38819 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00022 * 204.76028 * 7 2 1 9 9 N 1.36940 * 119.99818 * 24.76276 * 7 2 1 10 10 C 1.46496 * 119.99471 * 189.26995 * 9 7 2 11 11 C 1.53002 * 109.47422 * 90.00126 * 10 9 7 12 12 C 1.53001 * 109.47569 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.47317 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47028 * 65.00134 * 13 12 11 15 15 C 1.53003 * 109.47393 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.46702 * 300.00039 * 15 14 13 17 17 C 1.52997 * 109.47462 * 59.99589 * 16 15 14 18 18 C 1.52994 * 109.47132 * 300.00061 * 17 16 15 19 19 C 1.46500 * 120.00224 * 9.26660 * 9 7 2 20 20 C 1.50701 * 109.47209 * 269.21719 * 19 9 7 21 21 O 1.20825 * 119.99807 * 0.02562 * 20 19 9 22 22 O 1.34226 * 120.00111 * 180.02562 * 20 19 9 23 23 H 0.96997 * 119.99976 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47708 * 329.99569 * 10 9 7 25 25 H 1.09004 * 109.47127 * 209.99412 * 10 9 7 26 26 H 1.09000 * 109.47611 * 59.99156 * 11 10 9 27 27 H 1.09006 * 109.46901 * 299.99744 * 11 10 9 28 28 H 1.09003 * 109.46905 * 59.99422 * 12 11 10 29 29 H 1.08997 * 109.46771 * 299.99915 * 12 11 10 30 30 H 1.09005 * 109.47505 * 304.99783 * 13 12 11 31 31 H 1.09006 * 109.47146 * 299.99751 * 14 13 12 32 32 H 1.08993 * 109.47502 * 59.99857 * 14 13 12 33 33 H 1.08995 * 109.47278 * 179.97438 * 15 14 13 34 34 H 1.09003 * 109.46920 * 59.99456 * 15 14 13 35 35 H 1.09003 * 109.46958 * 299.99395 * 16 15 14 36 36 H 1.09000 * 109.47202 * 179.97438 * 16 15 14 37 37 H 1.09006 * 109.47380 * 180.02562 * 17 16 15 38 38 H 1.09005 * 109.46925 * 60.00417 * 17 16 15 39 39 H 1.08994 * 109.47605 * 299.99473 * 18 17 16 40 40 H 1.09011 * 109.47071 * 179.97438 * 18 17 16 41 41 H 1.08998 * 109.47077 * 29.21861 * 19 9 7 42 42 H 1.09000 * 109.46901 * 149.21595 * 19 9 7 43 43 H 0.96701 * 117.00170 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0157 -1.2452 0.3923 9 7 1.4198 -2.3338 -0.4957 10 6 2.0644 -3.6366 -0.3130 11 6 1.5804 -4.2662 0.9948 12 6 2.2532 -5.6271 1.1854 13 6 1.7697 -6.2564 2.4934 14 6 0.2726 -6.5555 2.3926 15 6 -0.2112 -7.1843 3.7009 16 6 0.5530 -8.4853 3.9545 17 6 2.0500 -8.1862 4.0553 18 6 2.5337 -7.5575 2.7470 19 6 0.1436 -2.2416 -1.2092 20 6 -0.9915 -2.4026 -0.2312 21 8 -0.7584 -2.5761 0.9416 22 8 -2.2615 -2.3533 -0.6629 23 1 -0.4850 0.8400 -0.0004 24 1 3.1457 -3.5048 -0.2744 25 1 1.8075 -4.2893 -1.1473 26 1 0.4991 -4.3980 0.9563 27 1 1.8373 -3.6135 1.8292 28 1 3.3346 -5.4956 1.2237 29 1 1.9959 -6.2795 0.3510 30 1 1.9473 -5.5647 3.3169 31 1 -0.2719 -5.6286 2.2123 32 1 0.0949 -7.2472 1.5692 33 1 -1.2778 -7.3970 3.6292 34 1 -0.0335 -6.4922 4.5240 35 1 0.3753 -9.1774 3.1314 36 1 0.2087 -8.9330 4.8868 37 1 2.5945 -9.1132 4.2356 38 1 2.2276 -7.4941 4.8785 39 1 2.3561 -8.2495 1.9239 40 1 3.6002 -7.3440 2.8190 41 1 0.0689 -1.2691 -1.6958 42 1 0.0900 -3.0291 -1.9610 43 1 -2.9556 -2.4614 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:27 Heat of formation + Delta-G solvation = -105.991297 kcal Electronic energy + Delta-G solvation = -21778.318115 eV Core-core repulsion = 18629.706829 eV Total energy + Delta-G solvation = -3148.611286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.80068 -38.52043 -36.02237 -34.35245 -33.67135 -31.38438 -30.65266 -29.31148 -27.15694 -25.30358 -23.03547 -22.41854 -21.15469 -20.17444 -19.74550 -19.50962 -16.82407 -16.55040 -15.45299 -15.15931 -14.94572 -14.67415 -14.13414 -14.05137 -13.85207 -13.72607 -13.32092 -12.90400 -12.68530 -12.22218 -11.99831 -11.75028 -11.41453 -11.26321 -11.11300 -11.00561 -10.95457 -10.74901 -10.67495 -10.54756 -10.28223 -10.17582 -10.01155 -9.90456 -9.85909 -9.66921 -9.41619 -8.99673 -8.47739 -7.05701 -5.90302 -3.15519 3.37312 3.45519 3.47993 4.00051 4.39868 4.63535 4.76639 4.82807 4.87706 5.23172 5.30664 5.32270 5.43462 5.56586 5.58627 5.62617 5.63638 5.73254 5.84857 6.01833 6.07433 6.12036 6.16475 6.21543 6.25171 6.29871 6.39058 6.41701 6.48002 6.53380 6.65884 6.68700 6.71251 7.00848 7.11460 7.12384 7.40961 7.73552 7.95897 8.21319 9.06834 9.53062 9.77808 10.18228 11.21810 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023079 B = 0.004894 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.949626 B = 5720.496759 C = 6313.679072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.004 4.004 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.293 1.293 7 C -0.245 4.245 8 H 0.081 0.919 9 N -0.571 5.571 10 C 0.146 3.854 11 C -0.136 4.136 12 C -0.113 4.113 13 C -0.084 4.084 14 C -0.115 4.115 15 C -0.120 4.120 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.114 4.114 19 C 0.189 3.811 20 C 0.477 3.523 21 O -0.512 6.512 22 O -0.546 6.546 23 H 0.256 0.744 24 H 0.049 0.951 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.112 0.888 42 H 0.049 0.951 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.687 -13.880 2.180 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.201 4.201 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.221 1.221 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.291 5.291 10 C 0.020 3.980 11 C -0.176 4.176 12 C -0.151 4.151 13 C -0.103 4.103 14 C -0.152 4.152 15 C -0.157 4.157 16 C -0.155 4.155 17 C -0.157 4.157 18 C -0.151 4.151 19 C 0.059 3.941 20 C 0.317 3.683 21 O -0.398 6.398 22 O -0.356 6.356 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.130 0.870 42 H 0.067 0.933 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.030 -13.729 2.203 13.942 hybrid contribution -0.281 0.975 0.857 1.328 sum 0.749 -12.754 3.060 13.137 Atomic orbital electron populations 1.69845 1.05246 1.25598 1.54546 1.24734 0.95200 0.98396 1.01729 0.86145 0.79333 0.83706 0.77192 1.20313 1.21508 1.22050 1.19348 0.96813 0.85197 1.36059 0.90110 1.44259 1.18892 1.02858 1.63070 1.20987 0.96404 0.86199 0.94449 1.22294 1.00992 0.93844 1.00475 1.21653 0.99761 0.97610 0.96124 1.21140 0.94748 0.95873 0.98506 1.21612 0.96022 1.00915 0.96658 1.21538 0.99002 0.96710 0.98476 1.21529 0.95422 0.97648 1.00943 1.21533 0.95830 1.00112 0.98199 1.21603 0.99317 0.97123 0.97080 1.20395 0.81236 1.02144 0.90309 1.25356 0.81958 0.69856 0.91153 1.90486 1.84138 1.45703 1.19482 1.84650 1.18474 1.86601 1.45921 0.93387 0.93247 0.94412 0.91491 0.92217 0.92779 0.92950 0.91510 0.91057 0.92584 0.92477 0.92176 0.92305 0.92637 0.92585 0.92187 0.92329 0.92343 0.86997 0.93258 0.76733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.75 9.01 55.49 0.50 -25.25 16 2 C 0.00 -0.10 4.89 -17.43 -0.09 -0.19 16 3 Si 0.91 21.64 29.62 -169.99 -5.03 16.61 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 7 C -0.25 -6.59 9.70 -15.05 -0.15 -6.74 16 8 H 0.08 2.14 7.93 -52.49 -0.42 1.73 16 9 N -0.57 -13.91 2.09 -174.61 -0.37 -14.28 16 10 C 0.15 2.96 5.71 -4.04 -0.02 2.93 16 11 C -0.14 -2.65 4.54 -26.73 -0.12 -2.78 16 12 C -0.11 -1.72 4.68 -26.73 -0.13 -1.85 16 13 C -0.08 -1.18 2.19 -90.62 -0.20 -1.37 16 14 C -0.11 -1.61 4.96 -26.73 -0.13 -1.74 16 15 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 16 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 17 C -0.12 -1.26 5.92 -26.74 -0.16 -1.42 16 18 C -0.11 -1.32 5.20 -26.73 -0.14 -1.46 16 19 C 0.19 4.43 5.58 -5.19 -0.03 4.40 16 20 C 0.48 11.50 6.33 36.01 0.23 11.73 16 21 O -0.51 -13.73 14.42 -18.75 -0.27 -14.00 16 22 O -0.55 -11.33 13.42 -39.25 -0.53 -11.85 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.05 0.97 8.03 -51.93 -0.42 0.55 16 25 H 0.04 0.69 7.90 -51.93 -0.41 0.28 16 26 H 0.07 1.43 4.73 -51.93 -0.25 1.18 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.19 6.57 -51.93 -0.34 0.85 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 41 H 0.11 2.85 6.29 -51.93 -0.33 2.52 16 42 H 0.05 0.99 7.90 -51.93 -0.41 0.58 16 43 H 0.38 6.32 9.10 45.56 0.41 6.73 16 LS Contribution 334.04 15.07 5.03 5.03 Total: -1.00 -30.48 334.04 -8.69 -39.17 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.78 Total: 6.08 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.25 Total: -1.50 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.13 Total: -39.53 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.80 Total: -25.86 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.48 -8.69 -39.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.819 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds