Wall clock time and date at job start Mon Mar 30 2020 01:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86790 * 120.00374 * 2 1 4 4 H 1.48498 * 109.47365 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46993 * 299.99805 * 3 2 1 6 6 H 1.48499 * 109.47149 * 59.99790 * 3 2 1 7 7 C 1.38819 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00022 * 204.76028 * 7 2 1 9 9 N 1.36940 * 119.99818 * 24.76276 * 7 2 1 10 10 C 1.46496 * 119.99471 * 189.26995 * 9 7 2 11 11 C 1.53002 * 109.47422 * 90.00126 * 10 9 7 12 12 C 1.53001 * 109.47569 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.47317 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47028 * 65.00134 * 13 12 11 15 15 C 1.53003 * 109.47393 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.46702 * 300.00039 * 15 14 13 17 17 C 1.52997 * 109.47462 * 59.99589 * 16 15 14 18 18 C 1.52994 * 109.47132 * 300.00061 * 17 16 15 19 19 C 1.46500 * 120.00224 * 9.26660 * 9 7 2 20 20 C 1.50701 * 109.47209 * 269.21719 * 19 9 7 21 21 O 1.20825 * 119.99807 * 0.02562 * 20 19 9 22 22 O 1.34226 * 120.00111 * 180.02562 * 20 19 9 23 23 H 0.96997 * 119.99976 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47708 * 329.99569 * 10 9 7 25 25 H 1.09004 * 109.47127 * 209.99412 * 10 9 7 26 26 H 1.09000 * 109.47611 * 59.99156 * 11 10 9 27 27 H 1.09006 * 109.46901 * 299.99744 * 11 10 9 28 28 H 1.09003 * 109.46905 * 59.99422 * 12 11 10 29 29 H 1.08997 * 109.46771 * 299.99915 * 12 11 10 30 30 H 1.09005 * 109.47505 * 304.99783 * 13 12 11 31 31 H 1.09006 * 109.47146 * 299.99751 * 14 13 12 32 32 H 1.08993 * 109.47502 * 59.99857 * 14 13 12 33 33 H 1.08995 * 109.47278 * 179.97438 * 15 14 13 34 34 H 1.09003 * 109.46920 * 59.99456 * 15 14 13 35 35 H 1.09003 * 109.46958 * 299.99395 * 16 15 14 36 36 H 1.09000 * 109.47202 * 179.97438 * 16 15 14 37 37 H 1.09006 * 109.47380 * 180.02562 * 17 16 15 38 38 H 1.09005 * 109.46925 * 60.00417 * 17 16 15 39 39 H 1.08994 * 109.47605 * 299.99473 * 18 17 16 40 40 H 1.09011 * 109.47071 * 179.97438 * 18 17 16 41 41 H 1.08998 * 109.47077 * 29.21861 * 19 9 7 42 42 H 1.09000 * 109.46901 * 149.21595 * 19 9 7 43 43 H 0.96701 * 117.00170 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0157 -1.2452 0.3923 9 7 1.4198 -2.3338 -0.4957 10 6 2.0644 -3.6366 -0.3130 11 6 1.5804 -4.2662 0.9948 12 6 2.2532 -5.6271 1.1854 13 6 1.7697 -6.2564 2.4934 14 6 0.2726 -6.5555 2.3926 15 6 -0.2112 -7.1843 3.7009 16 6 0.5530 -8.4853 3.9545 17 6 2.0500 -8.1862 4.0553 18 6 2.5337 -7.5575 2.7470 19 6 0.1436 -2.2416 -1.2092 20 6 -0.9915 -2.4026 -0.2312 21 8 -0.7584 -2.5761 0.9416 22 8 -2.2615 -2.3533 -0.6629 23 1 -0.4850 0.8400 -0.0004 24 1 3.1457 -3.5048 -0.2744 25 1 1.8075 -4.2893 -1.1473 26 1 0.4991 -4.3980 0.9563 27 1 1.8373 -3.6135 1.8292 28 1 3.3346 -5.4956 1.2237 29 1 1.9959 -6.2795 0.3510 30 1 1.9473 -5.5647 3.3169 31 1 -0.2719 -5.6286 2.2123 32 1 0.0949 -7.2472 1.5692 33 1 -1.2778 -7.3970 3.6292 34 1 -0.0335 -6.4922 4.5240 35 1 0.3753 -9.1774 3.1314 36 1 0.2087 -8.9330 4.8868 37 1 2.5945 -9.1132 4.2356 38 1 2.2276 -7.4941 4.8785 39 1 2.3561 -8.2495 1.9239 40 1 3.6002 -7.3440 2.8190 41 1 0.0689 -1.2691 -1.6958 42 1 0.0900 -3.0291 -1.9610 43 1 -2.9556 -2.4614 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:26 Heat of formation + Delta-G solvation = -122.509400 kcal Electronic energy + Delta-G solvation = -21779.034394 eV Core-core repulsion = 18629.706829 eV Total energy + Delta-G solvation = -3149.327564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.53594 -39.72088 -37.76835 -36.19483 -35.13629 -33.16058 -31.63453 -30.79055 -28.99253 -26.87525 -24.58074 -23.55808 -22.60981 -21.70214 -21.28166 -20.56223 -18.78346 -18.40536 -17.17703 -16.84808 -16.34131 -16.11551 -15.81494 -15.27134 -15.23948 -15.06309 -14.82303 -14.31398 -14.12802 -13.47662 -13.40825 -13.30548 -12.99743 -12.84912 -12.63838 -12.47250 -12.30895 -12.18057 -12.11011 -11.98384 -11.93355 -11.73355 -11.63508 -11.29405 -11.26268 -10.98661 -10.80745 -10.70722 -10.47728 -9.00297 -7.96457 -5.22000 1.46534 1.49499 1.59493 2.10374 2.49915 2.83902 3.26427 3.55923 3.80279 3.86214 3.92043 4.22114 4.30087 4.41434 4.47810 4.57337 4.62253 4.63101 4.67570 4.78104 4.81152 4.87448 4.91451 5.00641 5.10654 5.15248 5.18004 5.21725 5.25511 5.27202 5.34679 5.37713 5.43813 5.48971 5.57230 5.63673 5.66532 5.79262 6.21299 6.23331 7.04877 7.65982 7.86426 8.18737 9.13829 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023079 B = 0.004894 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.949626 B = 5720.496759 C = 6313.679072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.054 4.054 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.304 1.304 7 C -0.252 4.252 8 H 0.078 0.922 9 N -0.585 5.585 10 C 0.141 3.859 11 C -0.120 4.120 12 C -0.104 4.104 13 C -0.083 4.083 14 C -0.111 4.111 15 C -0.120 4.120 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.108 4.108 19 C 0.186 3.814 20 C 0.479 3.521 21 O -0.547 6.547 22 O -0.538 6.538 23 H 0.249 0.751 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.016 0.984 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 -15.824 1.671 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.248 4.248 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.232 1.232 7 C -0.382 4.382 8 H 0.096 0.904 9 N -0.305 5.305 10 C 0.016 3.984 11 C -0.160 4.160 12 C -0.142 4.142 13 C -0.102 4.102 14 C -0.149 4.149 15 C -0.157 4.157 16 C -0.151 4.151 17 C -0.157 4.157 18 C -0.146 4.146 19 C 0.057 3.943 20 C 0.321 3.679 21 O -0.435 6.435 22 O -0.349 6.349 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 1.832 -15.698 1.678 15.893 hybrid contribution -0.595 1.550 1.009 1.943 sum 1.237 -14.147 2.686 14.453 Atomic orbital electron populations 1.69991 1.06311 1.25498 1.56098 1.25417 0.95935 1.01068 1.02353 0.85198 0.78700 0.80012 0.76429 1.19187 1.21230 1.23248 1.19595 0.96839 0.86460 1.35263 0.90416 1.44449 1.19390 1.03729 1.62953 1.21202 0.96474 0.85096 0.95652 1.22045 1.00019 0.95463 0.98447 1.21571 0.99843 0.95274 0.97491 1.21104 0.95139 0.96898 0.97038 1.21547 0.95710 0.99510 0.98099 1.21537 0.99720 0.97524 0.96967 1.21513 0.95071 0.96491 1.02045 1.21548 0.96048 1.00786 0.97278 1.21555 0.99210 0.95650 0.98145 1.20410 0.80934 1.02279 0.90688 1.25431 0.82936 0.68926 0.90651 1.90483 1.84859 1.47344 1.20842 1.84568 1.18019 1.85973 1.46359 0.94191 0.92642 0.91594 0.93532 0.96459 0.91776 0.91125 0.93742 0.94690 0.91572 0.91944 0.93375 0.91373 0.91229 0.90526 0.92897 0.91191 0.91700 0.89102 0.89641 0.74517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.83 9.01 21.65 0.20 -53.63 16 2 C -0.05 -2.96 4.89 84.86 0.41 -2.54 16 3 Si 0.97 45.08 29.62 68.60 2.03 47.11 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 7 C -0.25 -13.65 9.70 84.03 0.82 -12.84 16 8 H 0.08 4.16 7.93 -2.91 -0.02 4.13 16 9 N -0.59 -28.50 2.09 -706.34 -1.48 -29.98 16 10 C 0.14 5.59 5.71 86.38 0.49 6.09 16 11 C -0.12 -4.73 4.54 30.60 0.14 -4.59 16 12 C -0.10 -3.03 4.68 30.59 0.14 -2.89 16 13 C -0.08 -2.27 2.19 -10.80 -0.02 -2.30 16 14 C -0.11 -3.09 4.96 30.60 0.15 -2.94 16 15 C -0.12 -2.85 5.92 30.60 0.18 -2.66 16 16 C -0.11 -2.12 5.92 30.59 0.18 -1.94 16 17 C -0.12 -2.22 5.92 30.59 0.18 -2.04 16 18 C -0.11 -2.26 5.20 30.59 0.16 -2.10 16 19 C 0.19 8.69 5.58 85.63 0.48 9.17 16 20 C 0.48 23.20 6.33 71.24 0.45 23.65 16 21 O -0.55 -30.00 14.42 21.97 0.32 -29.69 16 22 O -0.54 -21.95 13.42 -51.38 -0.69 -22.64 16 23 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 24 H 0.06 2.12 8.03 -2.39 -0.02 2.10 16 25 H 0.07 2.24 7.90 -2.38 -0.02 2.23 16 26 H 0.05 2.03 4.73 -2.39 -0.01 2.02 16 27 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.03 1.21 6.57 -2.38 -0.02 1.19 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.09 4.65 6.29 -2.39 -0.02 4.64 16 42 H 0.09 3.30 7.90 -2.39 -0.02 3.28 16 43 H 0.40 12.97 9.10 -74.06 -0.67 12.30 16 Total: -1.00 -66.42 334.04 4.44 -61.98 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.30 Total: 24.79 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 3.76 Total: 2.06 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -1.28 Total: -83.62 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -0.37 Total: -52.33 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -66.42 4.44 -61.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.531 kcal (2) G-P(sol) polarization free energy of solvation -66.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds