Wall clock time and date at job start Mon Mar 30 2020 01:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00488 * 2 1 4 4 H 1.48500 * 109.46883 * 270.00636 * 3 2 1 5 5 H 1.48504 * 109.46818 * 30.00023 * 3 2 1 6 6 H 1.48494 * 109.47095 * 150.00364 * 3 2 1 7 7 C 1.37882 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99785 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00082 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00099 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46974 * 325.00307 * 11 10 9 13 13 C 1.53002 * 109.47227 * 85.00225 * 11 10 9 14 14 C 1.52999 * 109.46904 * 60.00142 * 13 11 10 15 15 C 1.52999 * 109.47509 * 60.00153 * 14 13 11 16 16 C 1.53005 * 109.46758 * 300.00186 * 15 14 13 17 17 H 1.08999 * 109.46895 * 299.99612 * 16 15 14 18 18 C 1.53009 * 109.46802 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47127 * 64.99985 * 18 16 15 20 20 C 1.52996 * 109.46880 * 179.97438 * 19 18 16 21 21 C 1.50706 * 109.47215 * 179.97438 * 20 19 18 22 22 O 1.20825 * 119.99859 * 359.97438 * 21 20 19 23 23 O 1.34224 * 120.00295 * 180.02562 * 21 20 19 24 24 C 1.52998 * 109.47438 * 60.00013 * 16 15 14 25 25 H 0.97007 * 119.99549 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46827 * 60.00315 * 9 7 2 27 27 H 1.09001 * 109.47112 * 300.00668 * 9 7 2 28 28 H 1.00907 * 110.99534 * 56.05082 * 10 9 7 29 29 H 1.08999 * 109.47099 * 180.02562 * 13 11 10 30 30 H 1.08995 * 109.47139 * 300.00352 * 13 11 10 31 31 H 1.09000 * 109.46927 * 180.02562 * 14 13 11 32 32 H 1.09006 * 109.47016 * 300.00186 * 14 13 11 33 33 H 1.08994 * 109.47466 * 180.02562 * 15 14 13 34 34 H 1.08999 * 109.47101 * 59.99672 * 15 14 13 35 35 H 1.09001 * 109.46838 * 304.99476 * 18 16 15 36 36 H 1.09003 * 109.46737 * 184.99746 * 18 16 15 37 37 H 1.08997 * 109.47186 * 60.00021 * 19 18 16 38 38 H 1.09003 * 109.47116 * 299.99528 * 19 18 16 39 39 H 1.08997 * 109.47192 * 60.00026 * 20 19 18 40 40 H 1.09000 * 109.47459 * 300.00106 * 20 19 18 41 41 H 0.96700 * 117.00196 * 179.97438 * 23 21 20 42 42 H 1.08994 * 109.47518 * 59.99439 * 24 16 15 43 43 H 1.08996 * 109.47205 * 180.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2053 -3.6158 -0.0018 11 6 1.5050 -4.9071 -0.0024 12 1 0.5920 -4.8255 0.5875 13 6 1.1507 -5.2944 -1.4396 14 6 2.4322 -5.4089 -2.2675 15 6 3.3385 -6.4810 -1.6591 16 6 3.6927 -6.0936 -0.2218 17 1 4.2124 -5.1355 -0.2214 18 6 4.5986 -7.1660 0.3869 19 6 5.9309 -7.1948 -0.3647 20 6 6.8369 -8.2667 0.2445 21 6 8.1491 -8.2956 -0.4962 22 8 8.3398 -7.5369 -1.4170 23 8 9.1055 -9.1647 -0.1335 24 6 2.4112 -5.9792 0.6061 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6244 -2.5570 0.8896 28 1 2.8408 -3.5491 0.7793 29 1 0.6307 -6.2523 -1.4400 30 1 0.5051 -4.5307 -1.8731 31 1 2.1798 -5.6844 -3.2915 32 1 2.9520 -4.4507 -2.2670 33 1 4.2517 -6.5622 -2.2486 34 1 2.8189 -7.4391 -1.6595 35 1 4.1145 -8.1393 0.3058 36 1 4.7787 -6.9361 1.4370 37 1 6.4149 -6.2216 -0.2835 38 1 5.7508 -7.4247 -1.4148 39 1 6.3531 -9.2401 0.1637 40 1 7.0169 -8.0365 1.2945 41 1 9.9300 -9.1461 -0.6385 42 1 1.8915 -6.9372 0.6056 43 1 2.6635 -5.7028 1.6298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:50 Heat of formation + Delta-G solvation = -134.554368 kcal Electronic energy + Delta-G solvation = -20765.898268 eV Core-core repulsion = 17616.048395 eV Total energy + Delta-G solvation = -3149.849873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.48783 -38.91935 -36.52012 -35.40801 -33.65277 -32.11587 -31.07332 -29.21786 -26.98483 -25.79384 -23.40362 -21.99239 -21.70092 -20.90115 -20.29167 -18.49775 -18.27739 -16.72843 -16.50562 -16.32679 -15.28522 -14.90181 -14.65443 -14.36236 -13.86831 -13.72879 -13.45134 -13.12439 -12.88407 -12.40087 -12.15268 -11.95850 -11.79533 -11.72903 -11.56702 -11.30163 -11.24134 -11.08180 -10.85047 -10.77709 -10.70061 -10.59074 -10.43091 -10.09871 -9.85523 -9.62460 -9.45497 -9.08360 -8.43517 -7.17853 -5.99791 -4.01187 1.96641 2.79322 3.34304 3.39997 3.43785 4.46019 4.54588 4.73458 4.79632 5.03628 5.09339 5.13346 5.32785 5.36441 5.36915 5.46555 5.51676 5.71123 5.80145 5.81258 5.82794 5.93217 6.01018 6.03792 6.10051 6.17810 6.26015 6.27358 6.36547 6.40382 6.68469 6.70725 6.75929 6.84069 7.05253 7.35053 7.49005 7.63081 7.84103 8.19559 8.48821 8.69520 9.09009 9.63690 11.11352 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020542 B = 0.003565 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.723247 B = 7851.248857 C = 8678.656702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.679 5.679 11 C 0.084 3.916 12 H 0.031 0.969 13 C -0.102 4.102 14 C -0.110 4.110 15 C -0.108 4.108 16 C -0.080 4.080 17 H 0.085 0.915 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.113 4.113 21 C 0.475 3.525 22 O -0.513 6.513 23 O -0.522 6.522 24 C -0.111 4.111 25 H 0.260 0.740 26 H 0.027 0.973 27 H -0.017 1.017 28 H 0.327 0.673 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.408 0.592 42 H 0.057 0.943 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.457 -19.570 0.926 22.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.310 5.310 11 C -0.026 4.026 12 H 0.049 0.951 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.145 4.145 16 C -0.099 4.099 17 H 0.103 0.897 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.151 4.151 21 C 0.317 3.683 22 O -0.400 6.400 23 O -0.335 6.335 24 C -0.149 4.149 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.001 0.999 28 H 0.143 0.857 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.267 0.733 42 H 0.076 0.924 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.056 -19.230 0.214 22.183 hybrid contribution 0.538 0.927 0.583 1.220 sum 11.594 -18.302 0.796 21.680 Atomic orbital electron populations 1.69970 1.06074 1.26664 1.51157 1.24990 0.94849 0.99316 0.95471 0.86509 0.79691 0.83151 0.78108 1.20655 1.21381 1.19876 1.21209 0.93477 0.90344 1.49977 0.92037 1.19567 0.90626 0.87469 0.95531 1.60685 1.20859 1.00897 1.48605 1.21426 0.95078 0.90749 0.95380 0.95099 1.21450 0.97324 0.99531 0.95746 1.21378 0.96366 1.00139 0.96897 1.21559 0.99062 0.98205 0.95673 1.21060 0.95214 0.98961 0.94650 0.89656 1.21668 0.94528 0.99624 0.99361 1.21539 0.94658 0.98138 1.00593 1.21471 0.89424 1.03227 1.00962 1.23745 0.86043 0.76449 0.82053 1.90753 1.80485 1.39644 1.29144 1.84548 1.28386 1.58583 1.61941 1.21731 0.96178 0.98589 0.98369 0.93002 0.95481 0.99919 0.85652 0.93460 0.92112 0.93687 0.89962 0.92513 0.93201 0.92188 0.91962 0.90763 0.90682 0.87801 0.87697 0.73325 0.92432 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.55 9.32 -34.44 -0.32 -14.87 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 5.10 5.24 -4.98 -0.03 5.08 16 10 N -0.68 -14.16 4.81 -107.99 -0.52 -14.68 16 11 C 0.08 1.47 2.82 -67.71 -0.19 1.28 16 12 H 0.03 0.59 7.80 -51.93 -0.41 0.18 16 13 C -0.10 -1.70 5.53 -26.73 -0.15 -1.84 16 14 C -0.11 -1.70 5.77 -26.73 -0.15 -1.86 16 15 C -0.11 -1.38 4.96 -26.73 -0.13 -1.51 16 16 C -0.08 -1.01 2.03 -90.61 -0.18 -1.20 16 17 H 0.09 1.26 7.48 -51.93 -0.39 0.88 16 18 C -0.11 -1.10 4.68 -26.73 -0.13 -1.23 16 19 C -0.11 -1.08 4.26 -26.73 -0.11 -1.19 16 20 C -0.11 -0.84 5.81 -27.88 -0.16 -1.01 16 21 C 0.47 4.45 8.33 36.01 0.30 4.75 16 22 O -0.51 -6.74 16.74 -18.75 -0.31 -7.06 16 23 O -0.52 -3.66 13.42 -39.24 -0.53 -4.18 16 24 C -0.11 -1.51 4.58 -26.73 -0.12 -1.64 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.03 0.77 7.43 -51.93 -0.39 0.38 16 27 H -0.02 -0.48 8.06 -51.93 -0.42 -0.89 16 28 H 0.33 6.58 8.18 -39.29 -0.32 6.26 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.14 7.45 -51.93 -0.39 0.76 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.49 7.60 -51.93 -0.39 1.10 16 33 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 38 H 0.07 0.79 6.52 -51.93 -0.34 0.46 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.41 1.29 9.10 45.56 0.41 1.70 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 LS Contribution 341.58 15.07 5.15 5.15 Total: -1.00 -32.55 341.58 -8.71 -41.26 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.74 Total: 2.76 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -1.48 Total: -13.75 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.22 Total: -41.10 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.84 Total: -11.24 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.55 -8.71 -41.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.292 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds