Wall clock time and date at job start Mon Mar 30 2020 01:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00488 * 2 1 4 4 H 1.48500 * 109.46883 * 270.00636 * 3 2 1 5 5 H 1.48504 * 109.46818 * 30.00023 * 3 2 1 6 6 H 1.48494 * 109.47095 * 150.00364 * 3 2 1 7 7 C 1.37882 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99785 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00082 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00099 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46974 * 325.00307 * 11 10 9 13 13 C 1.53002 * 109.47227 * 85.00225 * 11 10 9 14 14 C 1.52999 * 109.46904 * 60.00142 * 13 11 10 15 15 C 1.52999 * 109.47509 * 60.00153 * 14 13 11 16 16 C 1.53005 * 109.46758 * 300.00186 * 15 14 13 17 17 H 1.08999 * 109.46895 * 299.99612 * 16 15 14 18 18 C 1.53009 * 109.46802 * 179.97438 * 16 15 14 19 19 C 1.52997 * 109.47127 * 64.99985 * 18 16 15 20 20 C 1.52996 * 109.46880 * 179.97438 * 19 18 16 21 21 C 1.50706 * 109.47215 * 179.97438 * 20 19 18 22 22 O 1.20825 * 119.99859 * 359.97438 * 21 20 19 23 23 O 1.34224 * 120.00295 * 180.02562 * 21 20 19 24 24 C 1.52998 * 109.47438 * 60.00013 * 16 15 14 25 25 H 0.97007 * 119.99549 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46827 * 60.00315 * 9 7 2 27 27 H 1.09001 * 109.47112 * 300.00668 * 9 7 2 28 28 H 1.00907 * 110.99534 * 56.05082 * 10 9 7 29 29 H 1.08999 * 109.47099 * 180.02562 * 13 11 10 30 30 H 1.08995 * 109.47139 * 300.00352 * 13 11 10 31 31 H 1.09000 * 109.46927 * 180.02562 * 14 13 11 32 32 H 1.09006 * 109.47016 * 300.00186 * 14 13 11 33 33 H 1.08994 * 109.47466 * 180.02562 * 15 14 13 34 34 H 1.08999 * 109.47101 * 59.99672 * 15 14 13 35 35 H 1.09001 * 109.46838 * 304.99476 * 18 16 15 36 36 H 1.09003 * 109.46737 * 184.99746 * 18 16 15 37 37 H 1.08997 * 109.47186 * 60.00021 * 19 18 16 38 38 H 1.09003 * 109.47116 * 299.99528 * 19 18 16 39 39 H 1.08997 * 109.47192 * 60.00026 * 20 19 18 40 40 H 1.09000 * 109.47459 * 300.00106 * 20 19 18 41 41 H 0.96700 * 117.00196 * 179.97438 * 23 21 20 42 42 H 1.08994 * 109.47518 * 59.99439 * 24 16 15 43 43 H 1.08996 * 109.47205 * 180.02562 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2053 -3.6158 -0.0018 11 6 1.5050 -4.9071 -0.0024 12 1 0.5920 -4.8255 0.5875 13 6 1.1507 -5.2944 -1.4396 14 6 2.4322 -5.4089 -2.2675 15 6 3.3385 -6.4810 -1.6591 16 6 3.6927 -6.0936 -0.2218 17 1 4.2124 -5.1355 -0.2214 18 6 4.5986 -7.1660 0.3869 19 6 5.9309 -7.1948 -0.3647 20 6 6.8369 -8.2667 0.2445 21 6 8.1491 -8.2956 -0.4962 22 8 8.3398 -7.5369 -1.4170 23 8 9.1055 -9.1647 -0.1335 24 6 2.4112 -5.9792 0.6061 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6244 -2.5570 0.8896 28 1 2.8408 -3.5491 0.7793 29 1 0.6307 -6.2523 -1.4400 30 1 0.5051 -4.5307 -1.8731 31 1 2.1798 -5.6844 -3.2915 32 1 2.9520 -4.4507 -2.2670 33 1 4.2517 -6.5622 -2.2486 34 1 2.8189 -7.4391 -1.6595 35 1 4.1145 -8.1393 0.3058 36 1 4.7787 -6.9361 1.4370 37 1 6.4149 -6.2216 -0.2835 38 1 5.7508 -7.4247 -1.4148 39 1 6.3531 -9.2401 0.1637 40 1 7.0169 -8.0365 1.2945 41 1 9.9300 -9.1461 -0.6385 42 1 1.8915 -6.9372 0.6056 43 1 2.6635 -5.7028 1.6298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:49 Heat of formation + Delta-G solvation = -155.908733 kcal Electronic energy + Delta-G solvation = -20766.824263 eV Core-core repulsion = 17616.048395 eV Total energy + Delta-G solvation = -3150.775868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.19761 -40.14618 -37.23010 -36.62469 -35.24865 -33.90323 -32.11086 -30.75181 -27.92787 -27.73614 -24.44430 -23.58424 -23.20352 -21.75468 -21.19252 -19.86621 -18.96682 -18.49373 -17.40302 -17.19118 -16.73563 -16.51139 -16.02556 -15.59365 -15.23954 -15.04607 -14.42460 -14.25873 -14.10447 -13.88557 -13.46689 -13.26008 -13.18856 -12.91744 -12.74603 -12.57254 -12.48421 -12.38335 -12.24939 -12.17406 -11.88542 -11.73820 -11.58326 -11.46925 -11.29444 -11.17260 -10.76167 -10.73088 -10.59162 -8.98808 -8.22632 -6.33467 1.28415 1.39440 1.41560 1.52663 2.24632 2.39323 3.10523 3.60872 3.80837 3.92087 4.00704 4.07469 4.17944 4.33457 4.47893 4.52123 4.56968 4.68432 4.71481 4.80247 4.82770 4.88493 4.95011 4.98682 5.05037 5.09541 5.19123 5.20512 5.27563 5.31559 5.42350 5.46780 5.51083 5.60738 5.63933 5.66706 5.70680 5.83887 6.06371 6.53269 6.79052 6.95365 7.05079 7.37800 8.89070 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020542 B = 0.003565 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.723247 B = 7851.248857 C = 8678.656702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.532 4.532 8 H 0.063 0.937 9 C 0.213 3.787 10 N -0.673 5.673 11 C 0.078 3.922 12 H 0.012 0.988 13 C -0.100 4.100 14 C -0.108 4.108 15 C -0.101 4.101 16 C -0.079 4.079 17 H 0.056 0.944 18 C -0.103 4.103 19 C -0.109 4.109 20 C -0.109 4.109 21 C 0.478 3.522 22 O -0.560 6.560 23 O -0.516 6.516 24 C -0.101 4.101 25 H 0.264 0.736 26 H -0.005 1.005 27 H -0.046 1.046 28 H 0.331 0.669 29 H 0.076 0.924 30 H 0.024 0.976 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.424 0.576 42 H 0.084 0.916 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.934 -21.495 1.764 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.571 4.571 8 H 0.081 0.919 9 C 0.085 3.915 10 N -0.304 5.304 11 C -0.032 4.032 12 H 0.030 0.970 13 C -0.139 4.139 14 C -0.146 4.146 15 C -0.138 4.138 16 C -0.098 4.098 17 H 0.075 0.925 18 C -0.141 4.141 19 C -0.147 4.147 20 C -0.146 4.146 21 C 0.322 3.678 22 O -0.452 6.452 23 O -0.330 6.330 24 C -0.139 4.139 25 H 0.073 0.927 26 H 0.013 0.987 27 H -0.029 1.029 28 H 0.149 0.851 29 H 0.095 0.905 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.285 0.715 42 H 0.103 0.897 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.562 -21.196 1.064 24.662 hybrid contribution 0.068 1.466 0.303 1.498 sum 12.630 -19.731 1.367 23.467 Atomic orbital electron populations 1.70104 1.07840 1.27896 1.51790 1.25963 0.95767 1.03395 0.94697 0.85346 0.78576 0.78060 0.78392 1.20023 1.20628 1.18652 1.21570 0.93740 0.91556 1.50202 0.91855 1.19160 0.90605 0.89159 0.92552 1.60566 1.19890 1.01137 1.48795 1.21600 0.95127 0.90302 0.96210 0.96962 1.21444 0.97631 0.99742 0.95049 1.21332 0.95939 0.99578 0.97730 1.21518 0.98765 0.97946 0.95569 1.21014 0.95047 0.98991 0.94721 0.92510 1.21562 0.93653 0.99342 0.99497 1.21433 0.95121 0.97851 1.00248 1.21498 0.88114 1.03640 1.01345 1.24132 0.86793 0.75632 0.81204 1.90745 1.81451 1.41616 1.31353 1.84512 1.28999 1.57542 1.61917 1.21674 0.95886 0.97972 0.98328 0.92694 0.98692 1.02871 0.85114 0.90528 0.95691 0.92600 0.93514 0.92019 0.90850 0.89848 0.90848 0.93149 0.91825 0.85142 0.85702 0.71450 0.89747 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.06 13.29 21.45 0.28 -57.78 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.53 -31.19 9.32 25.60 0.24 -30.95 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 9 C 0.21 11.78 5.24 85.56 0.45 12.23 16 10 N -0.67 -29.18 4.81 -495.58 -2.38 -31.56 16 11 C 0.08 2.75 2.82 44.92 0.13 2.87 16 12 H 0.01 0.48 7.80 -2.38 -0.02 0.46 16 13 C -0.10 -3.37 5.53 30.59 0.17 -3.20 16 14 C -0.11 -3.33 5.77 30.59 0.18 -3.16 16 15 C -0.10 -2.39 4.96 30.60 0.15 -2.23 16 16 C -0.08 -1.86 2.03 -10.79 -0.02 -1.88 16 17 H 0.06 1.67 7.48 -2.39 -0.02 1.65 16 18 C -0.10 -1.64 4.68 30.60 0.14 -1.50 16 19 C -0.11 -1.88 4.26 30.59 0.13 -1.75 16 20 C -0.11 -1.28 5.81 29.85 0.17 -1.10 16 21 C 0.48 8.07 8.33 71.24 0.59 8.67 16 22 O -0.56 -14.49 16.74 21.97 0.37 -14.12 16 23 O -0.52 -5.99 13.42 -51.35 -0.69 -6.68 16 24 C -0.10 -2.55 4.58 30.60 0.14 -2.41 16 25 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 26 H -0.01 -0.31 7.43 -2.39 -0.02 -0.32 16 27 H -0.05 -2.77 8.06 -2.39 -0.02 -2.79 16 28 H 0.33 13.73 8.18 -89.69 -0.73 12.99 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.02 0.98 7.45 -2.39 -0.02 0.97 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.76 7.60 -2.38 -0.02 1.74 16 33 H 0.06 1.43 6.56 -2.39 -0.02 1.41 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.06 1.24 6.52 -2.39 -0.02 1.23 16 39 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.42 1.84 9.10 -74.06 -0.67 1.17 16 42 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 Total: -1.00 -73.67 341.58 2.12 -71.55 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -0.42 Total: 15.12 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 2.93 Total: -23.97 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -2.10 Total: -89.34 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.32 Total: -20.80 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -73.67 2.12 -71.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.363 kcal (2) G-P(sol) polarization free energy of solvation -73.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds