Wall clock time and date at job start Mon Mar 30 2020 01:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99719 * 2 1 4 4 H 1.48507 * 109.47369 * 269.99642 * 3 2 1 5 5 H 1.48505 * 109.47450 * 29.99486 * 3 2 1 6 6 H 1.48504 * 109.47281 * 149.99885 * 3 2 1 7 7 C 1.37877 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99686 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99937 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00372 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.46779 * 34.99958 * 11 10 9 13 13 C 1.53001 * 109.47262 * 275.00212 * 11 10 9 14 14 C 1.52999 * 109.47360 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46740 * 59.99798 * 14 13 11 16 16 C 1.53001 * 109.47359 * 300.00203 * 15 14 13 17 17 H 1.09001 * 109.46580 * 299.99871 * 16 15 14 18 18 C 1.52996 * 109.46900 * 180.02562 * 16 15 14 19 19 C 1.53003 * 109.47298 * 65.00055 * 18 16 15 20 20 C 1.52996 * 109.47301 * 179.97438 * 19 18 16 21 21 C 1.50697 * 109.47491 * 179.97438 * 20 19 18 22 22 O 1.20833 * 119.99747 * 0.02562 * 21 20 19 23 23 O 1.34230 * 120.00262 * 179.72204 * 21 20 19 24 24 C 1.52994 * 109.47216 * 59.99865 * 16 15 14 25 25 H 0.97003 * 120.00228 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47363 * 59.99702 * 9 7 2 27 27 H 1.09004 * 109.46857 * 299.99699 * 9 7 2 28 28 H 1.00905 * 110.99823 * 303.95919 * 10 9 7 29 29 H 1.09003 * 109.47318 * 300.00129 * 13 11 10 30 30 H 1.09001 * 109.47260 * 59.99747 * 13 11 10 31 31 H 1.08997 * 109.47453 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.46715 * 300.00172 * 14 13 11 33 33 H 1.09001 * 109.46706 * 180.02562 * 15 14 13 34 34 H 1.09002 * 109.47211 * 60.00677 * 15 14 13 35 35 H 1.08996 * 109.47544 * 304.99609 * 18 16 15 36 36 H 1.09008 * 109.47191 * 184.99791 * 18 16 15 37 37 H 1.09004 * 109.47038 * 59.99613 * 19 18 16 38 38 H 1.08994 * 109.46775 * 299.99846 * 19 18 16 39 39 H 1.09004 * 109.47066 * 60.00027 * 20 19 18 40 40 H 1.09000 * 109.47234 * 300.00536 * 20 19 18 41 41 H 0.96699 * 116.99771 * 180.27188 * 23 21 20 42 42 H 1.09009 * 109.47154 * 60.00182 * 24 16 15 43 43 H 1.09003 * 109.47483 * 179.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5055 -4.9070 0.0011 12 1 0.5922 -4.8253 -0.5880 13 6 1.1523 -5.2950 1.4384 14 6 0.4224 -6.6397 1.4390 15 6 1.3280 -7.7117 0.8291 16 6 1.6812 -7.3237 -0.6081 17 1 0.7677 -7.2416 -1.1971 18 6 2.5861 -8.3960 -1.2180 19 6 1.8129 -9.7113 -1.3322 20 6 2.7177 -10.7834 -1.9428 21 6 1.9564 -12.0791 -2.0547 22 8 0.8077 -12.1388 -1.6845 23 8 2.5523 -13.1653 -2.5712 24 6 2.4109 -5.9790 -0.6087 25 1 -0.4850 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8407 -3.5486 -0.7808 29 1 2.0657 -5.3767 2.0276 30 1 0.5069 -4.5315 1.8727 31 1 0.1712 -6.9163 2.4629 32 1 -0.4910 -6.5575 0.8499 33 1 0.8078 -8.6696 0.8292 34 1 2.2414 -7.7938 1.4183 35 1 3.4581 -8.5413 -0.5804 36 1 2.9098 -8.0776 -2.2091 37 1 0.9409 -9.5660 -1.9700 38 1 1.4893 -10.0297 -0.3413 39 1 3.5899 -10.9288 -1.3053 40 1 3.0410 -10.4648 -2.9337 41 1 2.0224 -13.9723 -2.6263 42 1 3.3244 -6.0611 -0.0196 43 1 2.6630 -5.7027 -1.6325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:56 Heat of formation + Delta-G solvation = -137.685009 kcal Electronic energy + Delta-G solvation = -20366.219124 eV Core-core repulsion = 17216.233495 eV Total energy + Delta-G solvation = -3149.985628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.58220 -38.92482 -36.60899 -35.56258 -33.91250 -32.27197 -31.22618 -29.13711 -27.07058 -25.76083 -23.48924 -22.04611 -21.76262 -20.91693 -19.92998 -19.42202 -18.36871 -16.80578 -16.60312 -16.36285 -15.15904 -14.96456 -14.67384 -14.42122 -13.97703 -13.80226 -13.73944 -13.42759 -12.81867 -12.47434 -12.37764 -12.08405 -11.91922 -11.83754 -11.57320 -11.40541 -11.23559 -10.96289 -10.92436 -10.89159 -10.69678 -10.68245 -10.57532 -10.24969 -10.06554 -9.79711 -9.52034 -9.08842 -8.45580 -7.22767 -6.00502 -4.02254 1.86828 2.70161 3.33017 3.39008 3.43752 4.41264 4.45596 4.61804 4.65915 4.86477 4.93863 5.02369 5.22590 5.24714 5.35145 5.36834 5.43967 5.56566 5.64273 5.66247 5.78288 5.81265 5.84418 5.91698 6.01038 6.07528 6.12071 6.17591 6.21389 6.39905 6.46286 6.51069 6.60405 6.76271 6.87387 7.33847 7.47359 7.53652 7.83040 8.18189 8.46999 8.67990 9.07665 9.62534 11.10592 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.044040 B = 0.002715 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.638378 B =10310.390554 C =10607.975386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.688 5.688 11 C 0.088 3.912 12 H 0.032 0.968 13 C -0.104 4.104 14 C -0.120 4.120 15 C -0.113 4.113 16 C -0.084 4.084 17 H 0.069 0.931 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.114 4.114 21 C 0.476 3.524 22 O -0.515 6.515 23 O -0.521 6.521 24 C -0.112 4.112 25 H 0.261 0.739 26 H -0.016 1.016 27 H 0.028 0.972 28 H 0.327 0.673 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.409 0.591 42 H 0.067 0.933 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.142 -23.732 -3.489 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.319 5.319 11 C -0.023 4.023 12 H 0.050 0.950 13 C -0.143 4.143 14 C -0.158 4.158 15 C -0.150 4.150 16 C -0.103 4.103 17 H 0.087 0.913 18 C -0.151 4.151 19 C -0.149 4.149 20 C -0.152 4.152 21 C 0.318 3.682 22 O -0.403 6.403 23 O -0.333 6.333 24 C -0.150 4.150 25 H 0.070 0.930 26 H 0.002 0.998 27 H 0.046 0.954 28 H 0.144 0.856 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.267 0.733 42 H 0.086 0.914 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.986 -23.231 -2.669 23.909 hybrid contribution -0.375 0.385 -0.982 1.120 sum 4.610 -22.846 -3.652 23.591 Atomic orbital electron populations 1.69968 1.06074 1.26715 1.51041 1.25000 0.94877 0.99358 0.95441 0.86495 0.79804 0.83084 0.77990 1.20761 1.21266 1.19785 1.21210 0.93495 0.90343 1.50117 0.92023 1.19573 0.90588 0.87392 0.95616 1.60672 1.21196 1.01186 1.48799 1.21420 0.95310 0.90158 0.95402 0.95025 1.21492 1.00191 0.95428 0.97146 1.21553 0.98555 0.95498 1.00176 1.21631 0.99738 0.98111 0.95547 1.21120 0.98511 0.94222 0.96439 0.91298 1.21633 0.98475 0.93698 1.01272 1.21544 0.98041 0.93242 1.02112 1.21465 0.99865 0.88879 1.04960 1.23732 0.85868 0.85732 0.72836 1.90745 1.18916 1.84994 1.45636 1.84553 1.49664 1.22503 1.76611 1.21747 0.99025 0.93824 1.00402 0.92960 0.99817 0.95417 0.85577 0.91872 0.91984 0.92392 0.92390 0.92282 0.92088 0.91630 0.91718 0.91005 0.90636 0.87601 0.87601 0.73271 0.91433 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.75 9.32 -34.44 -0.32 -15.07 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.20 5.20 5.24 -4.98 -0.03 5.18 16 10 N -0.69 -14.92 6.30 -108.00 -0.68 -15.60 16 11 C 0.09 1.56 2.49 -67.72 -0.17 1.39 16 12 H 0.03 0.62 7.80 -51.93 -0.40 0.21 16 13 C -0.10 -1.74 5.43 -26.73 -0.15 -1.89 16 14 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 15 C -0.11 -1.28 4.96 -26.73 -0.13 -1.42 16 16 C -0.08 -0.95 2.19 -90.62 -0.20 -1.15 16 17 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 18 C -0.11 -0.98 4.68 -26.73 -0.13 -1.11 16 19 C -0.11 -0.93 4.26 -26.73 -0.11 -1.04 16 20 C -0.11 -0.74 5.81 -27.89 -0.16 -0.90 16 21 C 0.48 3.99 8.33 36.00 0.30 4.29 16 22 O -0.52 -6.15 16.74 -18.76 -0.31 -6.47 16 23 O -0.52 -3.24 13.42 -39.26 -0.53 -3.77 16 24 C -0.11 -1.54 4.48 -26.74 -0.12 -1.66 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H -0.02 -0.45 8.06 -51.93 -0.42 -0.87 16 27 H 0.03 0.80 7.44 -51.93 -0.39 0.41 16 28 H 0.33 6.76 8.34 -39.29 -0.33 6.44 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.18 7.45 -51.93 -0.39 0.79 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.08 0.69 6.52 -51.93 -0.34 0.35 16 39 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.41 0.96 9.10 45.56 0.41 1.38 16 42 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 43 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 LS Contribution 344.20 15.07 5.19 5.19 Total: -1.00 -33.12 344.20 -8.89 -42.01 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.80 Total: 1.91 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -1.47 Total: -13.68 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.06 Total: -42.09 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.84 Total: -10.23 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.12 -8.89 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.672 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds