Wall clock time and date at job start Mon Mar 30 2020 01:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99719 * 2 1 4 4 H 1.48507 * 109.47369 * 269.99642 * 3 2 1 5 5 H 1.48505 * 109.47450 * 29.99486 * 3 2 1 6 6 H 1.48504 * 109.47281 * 149.99885 * 3 2 1 7 7 C 1.37877 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99686 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99937 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00372 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.46779 * 34.99958 * 11 10 9 13 13 C 1.53001 * 109.47262 * 275.00212 * 11 10 9 14 14 C 1.52999 * 109.47360 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46740 * 59.99798 * 14 13 11 16 16 C 1.53001 * 109.47359 * 300.00203 * 15 14 13 17 17 H 1.09001 * 109.46580 * 299.99871 * 16 15 14 18 18 C 1.52996 * 109.46900 * 180.02562 * 16 15 14 19 19 C 1.53003 * 109.47298 * 65.00055 * 18 16 15 20 20 C 1.52996 * 109.47301 * 179.97438 * 19 18 16 21 21 C 1.50697 * 109.47491 * 179.97438 * 20 19 18 22 22 O 1.20833 * 119.99747 * 0.02562 * 21 20 19 23 23 O 1.34230 * 120.00262 * 179.72204 * 21 20 19 24 24 C 1.52994 * 109.47216 * 59.99865 * 16 15 14 25 25 H 0.97003 * 120.00228 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47363 * 59.99702 * 9 7 2 27 27 H 1.09004 * 109.46857 * 299.99699 * 9 7 2 28 28 H 1.00905 * 110.99823 * 303.95919 * 10 9 7 29 29 H 1.09003 * 109.47318 * 300.00129 * 13 11 10 30 30 H 1.09001 * 109.47260 * 59.99747 * 13 11 10 31 31 H 1.08997 * 109.47453 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.46715 * 300.00172 * 14 13 11 33 33 H 1.09001 * 109.46706 * 180.02562 * 15 14 13 34 34 H 1.09002 * 109.47211 * 60.00677 * 15 14 13 35 35 H 1.08996 * 109.47544 * 304.99609 * 18 16 15 36 36 H 1.09008 * 109.47191 * 184.99791 * 18 16 15 37 37 H 1.09004 * 109.47038 * 59.99613 * 19 18 16 38 38 H 1.08994 * 109.46775 * 299.99846 * 19 18 16 39 39 H 1.09004 * 109.47066 * 60.00027 * 20 19 18 40 40 H 1.09000 * 109.47234 * 300.00536 * 20 19 18 41 41 H 0.96699 * 116.99771 * 180.27188 * 23 21 20 42 42 H 1.09009 * 109.47154 * 60.00182 * 24 16 15 43 43 H 1.09003 * 109.47483 * 179.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5055 -4.9070 0.0011 12 1 0.5922 -4.8253 -0.5880 13 6 1.1523 -5.2950 1.4384 14 6 0.4224 -6.6397 1.4390 15 6 1.3280 -7.7117 0.8291 16 6 1.6812 -7.3237 -0.6081 17 1 0.7677 -7.2416 -1.1971 18 6 2.5861 -8.3960 -1.2180 19 6 1.8129 -9.7113 -1.3322 20 6 2.7177 -10.7834 -1.9428 21 6 1.9564 -12.0791 -2.0547 22 8 0.8077 -12.1388 -1.6845 23 8 2.5523 -13.1653 -2.5712 24 6 2.4109 -5.9790 -0.6087 25 1 -0.4850 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8407 -3.5486 -0.7808 29 1 2.0657 -5.3767 2.0276 30 1 0.5069 -4.5315 1.8727 31 1 0.1712 -6.9163 2.4629 32 1 -0.4910 -6.5575 0.8499 33 1 0.8078 -8.6696 0.8292 34 1 2.2414 -7.7938 1.4183 35 1 3.4581 -8.5413 -0.5804 36 1 2.9098 -8.0776 -2.2091 37 1 0.9409 -9.5660 -1.9700 38 1 1.4893 -10.0297 -0.3413 39 1 3.5899 -10.9288 -1.3053 40 1 3.0410 -10.4648 -2.9337 41 1 2.0224 -13.9723 -2.6263 42 1 3.3244 -6.0611 -0.0196 43 1 2.6630 -5.7027 -1.6325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184910.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:56 Heat of formation + Delta-G solvation = -159.994001 kcal Electronic energy + Delta-G solvation = -20367.186514 eV Core-core repulsion = 17216.233495 eV Total energy + Delta-G solvation = -3150.953019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20934 -40.08700 -37.27662 -36.80094 -35.32350 -34.14003 -32.18485 -30.69275 -28.01744 -27.60936 -24.54369 -23.54754 -23.14695 -21.66120 -21.00340 -20.64441 -18.98223 -18.55174 -17.39532 -17.20297 -16.71276 -16.35146 -15.98350 -15.76974 -15.36208 -15.02859 -14.61562 -14.40512 -14.19814 -13.89335 -13.65187 -13.30469 -13.23413 -12.77863 -12.74932 -12.62461 -12.49748 -12.29881 -12.23138 -12.08181 -12.05185 -11.86581 -11.60351 -11.54323 -11.31615 -11.30616 -10.85433 -10.81536 -10.66656 -9.10556 -8.23339 -6.35194 1.26664 1.40179 1.42509 1.54409 2.22924 2.39417 3.09530 3.45648 3.74318 3.83330 3.99516 4.09898 4.15104 4.25776 4.36954 4.42062 4.56178 4.60419 4.64189 4.69944 4.75485 4.81044 4.89076 4.93885 5.04314 5.04927 5.11827 5.21017 5.24049 5.27267 5.32569 5.40809 5.42698 5.45291 5.54181 5.61554 5.67793 5.69596 6.03673 6.48387 6.75245 6.91677 7.03499 7.36171 8.88439 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.044040 B = 0.002715 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.638378 B =10310.390554 C =10607.975386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.212 3.788 10 N -0.686 5.686 11 C 0.083 3.917 12 H 0.009 0.991 13 C -0.101 4.101 14 C -0.115 4.115 15 C -0.107 4.107 16 C -0.081 4.081 17 H 0.057 0.943 18 C -0.104 4.104 19 C -0.108 4.108 20 C -0.111 4.111 21 C 0.479 3.521 22 O -0.559 6.559 23 O -0.517 6.517 24 C -0.101 4.101 25 H 0.265 0.735 26 H -0.046 1.046 27 H -0.004 1.004 28 H 0.335 0.665 29 H 0.066 0.934 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.425 0.575 42 H 0.076 0.924 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.478 -24.832 -3.873 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.084 3.916 10 N -0.316 5.316 11 C -0.027 4.027 12 H 0.027 0.973 13 C -0.139 4.139 14 C -0.153 4.153 15 C -0.145 4.145 16 C -0.100 4.100 17 H 0.076 0.924 18 C -0.141 4.141 19 C -0.145 4.145 20 C -0.148 4.148 21 C 0.324 3.676 22 O -0.451 6.451 23 O -0.330 6.330 24 C -0.139 4.139 25 H 0.074 0.926 26 H -0.029 1.029 27 H 0.014 0.986 28 H 0.152 0.848 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.286 0.714 42 H 0.095 0.905 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.346 -24.376 -3.067 25.643 hybrid contribution -1.138 0.664 -0.867 1.577 sum 6.208 -23.712 -3.934 24.825 Atomic orbital electron populations 1.70109 1.07940 1.28015 1.51583 1.26026 0.95822 1.03617 0.94565 0.85282 0.78463 0.77679 0.78551 1.19528 1.20751 1.18730 1.21571 0.93854 0.91410 1.50523 0.91584 1.19178 0.90597 0.89152 0.92641 1.60579 1.20398 1.01534 1.49100 1.21583 0.95162 0.89686 0.96268 0.97343 1.21449 0.99943 0.96434 0.96069 1.21526 0.98327 0.94229 1.01257 1.21610 0.99796 0.97705 0.95343 1.21093 0.98476 0.93764 0.96710 0.92433 1.21539 0.98134 0.92588 1.01842 1.21436 0.97897 0.93702 1.01515 1.21498 0.99686 0.87290 1.06339 1.24088 0.85259 0.86572 0.71720 1.90736 1.20833 1.85741 1.47754 1.84519 1.49733 1.22957 1.75830 1.21663 0.98430 0.93531 1.00292 0.92632 1.02872 0.98604 0.84795 0.91548 0.95572 0.91028 0.93228 0.90742 0.90942 0.90051 0.90755 0.92606 0.91486 0.85346 0.85722 0.71416 0.90541 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.14 13.29 21.45 0.28 -57.86 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.98 45.02 29.54 68.60 2.03 47.04 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.41 9.32 25.60 0.24 -31.17 16 8 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 9 C 0.21 11.89 5.24 85.56 0.45 12.34 16 10 N -0.69 -30.53 6.30 -495.60 -3.12 -33.65 16 11 C 0.08 3.03 2.49 44.91 0.11 3.14 16 12 H 0.01 0.35 7.80 -2.39 -0.02 0.33 16 13 C -0.10 -3.46 5.43 30.59 0.17 -3.30 16 14 C -0.12 -3.06 5.92 30.59 0.18 -2.87 16 15 C -0.11 -2.23 4.96 30.60 0.15 -2.08 16 16 C -0.08 -1.71 2.19 -10.80 -0.02 -1.74 16 17 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 18 C -0.10 -1.49 4.68 30.59 0.14 -1.34 16 19 C -0.11 -1.56 4.26 30.59 0.13 -1.43 16 20 C -0.11 -1.11 5.81 29.85 0.17 -0.94 16 21 C 0.48 7.13 8.33 71.23 0.59 7.72 16 22 O -0.56 -12.95 16.74 21.94 0.37 -12.59 16 23 O -0.52 -5.25 13.42 -51.41 -0.69 -5.94 16 24 C -0.10 -2.67 4.48 30.59 0.14 -2.53 16 25 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 26 H -0.05 -2.81 8.06 -2.39 -0.02 -2.83 16 27 H 0.00 -0.26 7.44 -2.38 -0.02 -0.27 16 28 H 0.33 13.94 8.34 -89.69 -0.75 13.19 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.03 1.05 7.45 -2.39 -0.02 1.03 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.38 6.56 -2.39 -0.02 1.36 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.06 0.99 8.10 -2.38 -0.02 0.97 16 38 H 0.07 1.09 6.52 -2.39 -0.02 1.07 16 39 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.12 0.82 8.14 -2.39 -0.02 0.81 16 41 H 0.42 1.21 9.10 -74.06 -0.67 0.53 16 42 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.06 1.57 8.12 -2.39 -0.02 1.55 16 Total: -1.00 -73.80 344.20 1.35 -72.45 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -0.43 Total: 14.41 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 2.91 Total: -23.87 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -2.84 Total: -91.51 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.32 Total: -18.53 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -73.80 1.35 -72.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184910.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.547 kcal (2) G-P(sol) polarization free energy of solvation -73.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds