Wall clock time and date at job start Mon Mar 30 2020 01:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00395 * 2 1 4 4 H 1.48509 * 109.46691 * 270.00114 * 3 2 1 5 5 H 1.48502 * 109.46910 * 29.99324 * 3 2 1 6 6 H 1.48493 * 109.47289 * 149.99896 * 3 2 1 7 7 C 1.37881 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00374 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99547 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47073 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47444 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47444 * 179.97438 * 11 10 9 13 13 C 1.50692 * 109.47144 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00567 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99803 * 179.97438 * 13 12 11 16 16 C 1.46509 * 120.00099 * 180.02562 * 15 13 12 17 17 H 1.08998 * 110.01761 * 33.60379 * 16 15 13 18 18 C 1.54224 * 110.00096 * 272.19750 * 16 15 13 19 19 C 1.54266 * 106.42656 * 240.68917 * 18 16 15 20 20 C 1.54891 * 104.31343 * 23.64256 * 19 18 16 21 21 C 1.54264 * 110.03149 * 155.00270 * 16 15 13 22 22 H 1.09006 * 110.48110 * 214.34721 * 21 16 15 23 23 C 1.52992 * 110.60118 * 336.93592 * 21 16 15 24 24 O 1.42897 * 109.47310 * 181.29343 * 23 21 16 25 25 H 0.96999 * 119.99515 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47345 * 60.00253 * 9 7 2 27 27 H 1.09003 * 109.47187 * 299.99697 * 9 7 2 28 28 H 1.09009 * 109.46663 * 59.99850 * 10 9 7 29 29 H 1.08997 * 109.47226 * 300.00113 * 10 9 7 30 30 H 1.09004 * 109.46613 * 60.00451 * 11 10 9 31 31 H 1.08997 * 109.47267 * 300.00413 * 11 10 9 32 32 H 1.08996 * 109.46799 * 60.00280 * 12 11 10 33 33 H 1.09003 * 109.46897 * 300.00237 * 12 11 10 34 34 H 0.97007 * 120.00371 * 0.02562 * 15 13 12 35 35 H 1.08998 * 110.14251 * 121.44157 * 18 16 15 36 36 H 1.09004 * 110.08793 * 359.90402 * 18 16 15 37 37 H 1.09002 * 110.48609 * 264.89669 * 19 18 16 38 38 H 1.08998 * 110.48769 * 142.38762 * 19 18 16 39 39 H 1.09000 * 110.75322 * 80.30558 * 20 19 18 40 40 H 1.09002 * 110.75658 * 203.67757 * 20 19 18 41 41 H 1.09000 * 109.47808 * 301.29946 * 23 21 16 42 42 H 1.09002 * 109.47135 * 61.30103 * 23 21 16 43 43 H 0.96706 * 114.00464 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0023 11 6 5.5514 -2.6367 0.0022 12 6 6.0614 -4.0793 0.0040 13 6 7.5683 -4.0793 0.0046 14 8 8.1748 -3.0290 0.0042 15 7 8.2421 -5.2465 0.0067 16 6 9.7072 -5.2466 0.0078 17 1 10.0800 -4.3929 0.5738 18 6 10.2359 -5.1930 -1.4400 19 6 11.0658 -6.4764 -1.6491 20 6 10.5056 -7.4698 -0.6011 21 6 10.2351 -6.5594 0.6225 22 1 11.1574 -6.3782 1.1745 23 6 9.1808 -7.1884 1.5354 24 8 9.7050 -8.3851 2.1145 25 1 -0.4849 0.8401 -0.0004 26 1 3.8745 -0.6802 0.8911 27 1 3.8752 -0.6805 -0.8889 28 1 3.6584 -3.1511 -0.8876 29 1 3.6578 -3.1499 0.8924 30 1 5.9147 -2.1222 0.8919 31 1 5.9147 -2.1236 -0.8881 32 1 5.6981 -4.5941 -0.8853 33 1 5.6980 -4.5920 0.8947 34 1 7.7571 -6.0866 0.0075 35 1 10.8660 -4.3143 -1.5772 36 1 9.4025 -5.1687 -2.1422 37 1 12.1223 -6.2820 -1.4639 38 1 10.9214 -6.8641 -2.6576 39 1 9.5809 -7.9249 -0.9559 40 1 11.2449 -8.2332 -0.3586 41 1 8.9196 -6.4860 2.3269 42 1 8.2910 -7.4265 0.9527 43 1 9.0892 -8.8380 2.7068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001636631816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:11 Heat of formation + Delta-G solvation = -121.104577 kcal Electronic energy + Delta-G solvation = -20434.174999 eV Core-core repulsion = 17284.908353 eV Total energy + Delta-G solvation = -3149.266647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41778 -38.54094 -36.58919 -35.02640 -33.73893 -32.55550 -30.52951 -30.22252 -28.09181 -25.79001 -24.75645 -22.36310 -20.97443 -20.52703 -20.03512 -19.79298 -17.95655 -16.95565 -16.56423 -16.32404 -15.75659 -15.52972 -15.07251 -14.94520 -14.20449 -14.09880 -13.80257 -13.68658 -12.99289 -12.65172 -12.51487 -12.17840 -11.98006 -11.74904 -11.63615 -11.45255 -11.31356 -11.12656 -11.09395 -10.94235 -10.73777 -10.53829 -10.33389 -9.97012 -9.81120 -9.64735 -9.41330 -9.23063 -9.11772 -8.49306 -6.00585 -3.98026 2.65478 3.03279 3.35457 3.42451 3.48574 3.65631 4.17716 4.21690 4.50208 4.56560 4.73878 4.85606 4.93712 5.01039 5.13180 5.18804 5.23086 5.24341 5.28244 5.33444 5.34890 5.41634 5.62461 5.68443 5.75211 5.85186 5.87642 6.00454 6.02727 6.15174 6.33448 6.42744 6.68242 6.82364 6.99162 7.18329 7.36206 7.38410 7.51120 7.84945 8.20330 8.58379 9.04418 9.62887 11.12969 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034817 B = 0.002899 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.006032 B = 9657.700878 C =10066.536855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.103 4.103 11 C -0.106 4.106 12 C -0.140 4.140 13 C 0.512 3.488 14 O -0.535 6.535 15 N -0.735 5.735 16 C 0.147 3.853 17 H 0.093 0.907 18 C -0.134 4.134 19 C -0.126 4.126 20 C -0.113 4.113 21 C -0.100 4.100 22 H 0.093 0.907 23 C 0.084 3.916 24 O -0.573 6.573 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.398 0.602 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.143 -18.050 0.506 28.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.180 4.180 13 C 0.300 3.700 14 O -0.410 6.410 15 N -0.390 5.390 16 C 0.042 3.958 17 H 0.111 0.889 18 C -0.173 4.173 19 C -0.164 4.164 20 C -0.150 4.150 21 C -0.119 4.119 22 H 0.111 0.889 23 C 0.006 3.994 24 O -0.378 6.378 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 22.945 -16.974 0.154 28.541 hybrid contribution -0.447 0.358 0.282 0.638 sum 22.498 -16.616 0.435 27.972 Atomic orbital electron populations 1.69922 1.06316 1.26827 1.51497 1.25045 0.94734 0.99234 0.94606 0.86771 0.80430 0.83531 0.78547 1.20310 1.21461 1.18893 1.21188 0.89681 0.94376 1.50507 0.91120 1.19576 0.96891 0.92502 0.96311 1.21478 0.91725 0.99922 1.00897 1.21478 0.97177 0.92838 1.02899 1.21785 0.90295 1.01768 1.04120 1.21101 0.90861 0.83257 0.74821 1.90699 1.70574 1.31320 1.48445 1.46379 1.06673 1.09002 1.76943 1.21602 0.80184 0.97618 0.96399 0.88911 1.22658 1.00160 0.98302 0.96168 1.22388 0.99589 0.95179 0.99261 1.22502 1.01306 0.97261 0.93966 1.22255 0.99268 0.94231 0.96140 0.88888 1.22127 0.95298 0.86366 0.95602 1.86460 1.45556 1.39729 1.66077 0.92816 0.96630 0.97058 0.92889 0.92868 0.91811 0.91796 0.89021 0.89089 0.76590 0.90974 0.90977 0.91445 0.91443 0.91457 0.90955 0.93161 0.93611 0.77224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 11 C -0.11 -1.77 4.50 -26.73 -0.12 -1.89 16 12 C -0.14 -1.71 5.70 -27.89 -0.16 -1.87 16 13 C 0.51 6.58 7.83 -10.99 -0.09 6.50 16 14 O -0.53 -9.14 15.64 5.56 0.09 -9.05 16 15 N -0.74 -6.74 4.35 -52.54 -0.23 -6.97 16 16 C 0.15 1.32 3.13 -66.62 -0.21 1.11 16 17 H 0.09 1.01 7.56 -51.93 -0.39 0.61 16 18 C -0.13 -1.16 6.62 -25.43 -0.17 -1.33 16 19 C -0.13 -0.86 6.82 -25.07 -0.17 -1.04 16 20 C -0.11 -0.77 6.18 -24.74 -0.15 -0.92 16 21 C -0.10 -0.74 3.10 -88.96 -0.28 -1.01 16 22 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 23 C 0.08 0.56 5.65 37.15 0.21 0.77 16 24 O -0.57 -4.05 13.50 -35.23 -0.48 -4.52 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 28 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.13 8.10 -51.93 -0.42 0.70 16 31 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.40 2.66 6.49 -40.82 -0.26 2.40 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.69 7.92 -51.93 -0.41 0.27 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.44 8.02 -51.93 -0.42 0.03 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.05 0.25 6.28 -51.93 -0.33 -0.08 16 43 H 0.38 1.14 9.12 45.56 0.42 1.56 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -34.82 343.59 -7.96 -42.78 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.82 Total: -1.52 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -1.81 Total: -15.96 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.55 Total: -34.65 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.39 Total: -13.58 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.82 -7.96 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001636631816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.322 kcal (2) G-P(sol) polarization free energy of solvation -34.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds