Wall clock time and date at job start Mon Mar 30 2020 01:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47077 * 2 1 4 4 C 1.53003 * 109.47166 * 240.00357 * 2 1 3 5 5 C 1.50694 * 109.47531 * 64.99614 * 4 2 1 6 6 H 1.08007 * 119.99857 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00307 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99928 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00336 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47395 * 59.99889 * 9 7 5 11 11 H 1.48500 * 109.47003 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46928 * 299.99967 * 9 7 5 13 13 C 1.52995 * 109.47023 * 119.99768 * 2 1 3 14 14 N 1.46904 * 109.46992 * 185.32417 * 13 2 1 15 15 C 1.48598 * 110.99957 * 79.96441 * 14 13 2 16 16 C 1.54449 * 104.50148 * 158.85654 * 15 14 13 17 17 H 1.09001 * 110.12819 * 94.91324 * 16 15 14 18 18 C 1.54114 * 108.81624 * 215.62397 * 16 15 14 19 19 S 1.83911 * 102.73250 * 140.73506 * 18 16 15 20 20 C 1.83910 * 94.80156 * 325.28044 * 19 18 16 21 21 C 1.53493 * 105.21688 * 336.23262 * 16 15 14 22 22 C 1.52999 * 110.06284 * 118.62788 * 21 16 15 23 23 C 1.48591 * 110.99984 * 195.39953 * 14 13 2 24 24 H 1.08996 * 109.47087 * 294.58158 * 1 2 3 25 25 H 1.09000 * 109.47022 * 54.57891 * 1 2 3 26 26 H 1.08998 * 109.46794 * 174.57458 * 1 2 3 27 27 H 1.08993 * 109.46923 * 185.00043 * 4 2 1 28 28 H 1.09008 * 109.46623 * 304.99539 * 4 2 1 29 29 H 0.97000 * 120.00067 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47054 * 65.33048 * 13 2 1 31 31 H 1.08994 * 109.47277 * 305.32422 * 13 2 1 32 32 H 1.08995 * 110.42543 * 277.61401 * 15 14 13 33 33 H 1.09003 * 110.42682 * 39.97698 * 15 14 13 34 34 H 1.09010 * 110.75848 * 259.04127 * 18 16 15 35 35 H 1.09000 * 110.75857 * 22.42026 * 18 16 15 36 36 H 1.08997 * 110.75830 * 276.41110 * 20 19 18 37 37 H 1.09007 * 110.75523 * 153.02777 * 20 19 18 38 38 H 1.08998 * 109.47296 * 185.43914 * 22 21 16 39 39 H 1.08999 * 109.47179 * 305.43858 * 22 21 16 40 40 H 1.08999 * 109.47439 * 65.43416 * 22 21 16 41 41 H 1.09006 * 110.43116 * 82.39386 * 23 14 13 42 42 H 1.09001 * 110.43132 * 319.90642 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0570 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6748 -1.5198 -3.8513 9 14 1.4988 0.5628 -5.2497 10 1 2.0918 1.9228 -5.1872 11 1 1.9927 -0.1379 -6.4622 12 1 0.0189 0.6704 -5.3090 13 6 2.0400 -0.7212 1.2492 14 7 3.5034 -0.6109 1.3152 15 6 3.9140 0.7132 1.8502 16 6 5.3536 0.4930 2.3646 17 1 6.0738 0.7799 1.5984 18 6 5.5640 1.3435 3.6325 19 16 6.5611 0.2315 4.7057 20 6 5.7414 -1.3117 4.1321 21 6 5.4543 -1.0122 2.6479 22 6 6.5341 -1.6413 1.7652 23 6 4.0679 -1.5870 2.2829 24 1 -0.3633 0.4275 0.9345 25 1 -0.3633 0.5956 -0.8375 26 1 -0.3633 -1.0231 -0.0972 27 1 3.1263 -0.7994 -1.2056 28 1 1.6054 -1.7198 -1.2952 29 1 2.9214 -1.8431 -4.7319 30 1 1.7567 -1.7727 1.2028 31 1 1.6009 -0.2654 2.1366 32 1 3.9032 1.4631 1.0593 33 1 3.2578 1.0136 2.6671 34 1 6.1169 2.2537 3.3999 35 1 4.6091 1.5796 4.1022 36 1 4.8137 -1.4823 4.6783 37 1 6.4122 -2.1652 4.2313 38 1 6.5318 -2.7225 1.9031 39 1 6.3306 -1.4079 0.7201 40 1 7.5093 -1.2416 2.0434 41 1 4.1729 -2.5670 1.8173 42 1 3.4374 -1.6517 3.1697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653213631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:48 Heat of formation + Delta-G solvation = -14.356121 kcal Electronic energy + Delta-G solvation = -19379.833172 eV Core-core repulsion = 16677.948357 eV Total energy + Delta-G solvation = -2701.884815 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.89366 -36.08144 -33.38764 -31.97895 -31.73188 -27.71231 -27.07638 -26.41196 -26.12820 -23.50670 -22.43512 -21.24896 -19.25060 -18.47624 -16.52371 -16.30994 -15.73005 -15.33665 -14.82710 -14.45628 -14.30084 -13.72972 -13.44248 -13.01071 -12.82278 -12.70735 -12.48091 -12.08147 -11.94511 -11.87141 -11.59784 -11.33537 -11.18554 -11.02885 -10.96229 -10.84839 -10.75953 -10.62693 -10.33335 -10.17179 -9.80330 -9.64557 -9.06449 -8.86512 -8.24845 -8.01895 -7.86317 -5.88452 -3.88920 1.75135 2.12834 3.37710 3.42414 3.44507 4.04731 4.41954 4.53592 4.57129 4.65267 4.76084 4.92227 5.07328 5.20579 5.38181 5.42843 5.47063 5.52689 5.55129 5.61326 5.64035 5.77603 5.87649 6.01058 6.02802 6.05908 6.13955 6.16790 6.25627 6.34339 6.36744 6.49195 6.94189 6.99984 7.17476 7.29298 7.46270 7.84672 8.06669 8.20383 8.57317 9.18672 9.73258 11.22663 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028005 B = 0.004373 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.591265 B = 6401.265918 C = 6669.123656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 H 0.054 0.946 4 C 0.036 3.964 5 C -0.514 4.514 6 H 0.051 0.949 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.053 3.947 14 N -0.491 5.491 15 C 0.040 3.960 16 C -0.089 4.089 17 H 0.098 0.902 18 C -0.057 4.057 19 S -0.310 6.310 20 C -0.054 4.054 21 C -0.062 4.062 22 C -0.132 4.132 23 C 0.042 3.958 24 H 0.027 0.973 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.008 0.992 29 H 0.258 0.742 30 H 0.067 0.933 31 H 0.022 0.978 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.102 1.587 16.149 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.001 4.001 5 C -0.552 4.552 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.205 1.205 13 C -0.075 4.075 14 N -0.214 5.214 15 C -0.089 4.089 16 C -0.109 4.109 17 H 0.116 0.884 18 C -0.206 4.206 19 S -0.082 6.082 20 C -0.202 4.202 21 C -0.064 4.064 22 C -0.190 4.190 23 C -0.088 4.088 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.281 1.590 16.306 17.546 hybrid contribution -1.558 0.413 -0.881 1.836 sum 4.723 2.003 15.425 16.256 Atomic orbital electron populations 1.21703 0.96509 1.01224 0.99560 1.21161 0.94075 0.99198 0.95483 0.92742 1.19038 0.97379 0.94397 0.89242 1.21275 1.34392 1.08138 0.91413 0.93106 1.24977 0.95473 0.95068 0.98829 1.69965 1.39186 1.21165 1.23184 0.86781 0.78774 0.80215 0.82919 1.20422 1.21433 1.20458 1.22457 0.86188 1.01048 0.97785 1.65407 1.11267 1.01814 1.42922 1.23354 0.93262 0.93865 0.98398 1.22474 0.99020 0.92650 0.96753 0.88386 1.24283 1.01344 0.99561 0.95375 1.87879 1.54087 1.06220 1.60006 1.24360 1.02468 0.96812 0.96556 1.21754 0.96877 0.94752 0.93040 1.21867 0.96893 0.99935 1.00283 1.23390 0.92955 0.97859 0.94574 0.95412 0.92022 0.93525 0.94904 0.97386 0.93223 0.91409 0.95988 0.89418 0.94064 0.87738 0.89292 0.89383 0.87706 0.92491 0.90810 0.92300 0.89647 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.91 37.16 0.33 -2.13 16 2 C -0.08 -1.61 2.43 -90.62 -0.22 -1.83 16 3 H 0.05 1.12 7.59 -51.93 -0.39 0.73 16 4 C 0.04 0.93 4.40 -27.88 -0.12 0.81 16 5 C -0.51 -14.41 8.47 -34.45 -0.29 -14.70 16 6 H 0.05 1.39 7.06 -52.48 -0.37 1.02 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 9 Si 0.88 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.05 0.89 4.26 -3.82 -0.02 0.88 16 14 N -0.49 -7.81 4.69 -229.81 -1.08 -8.89 16 15 C 0.04 0.55 5.58 -2.12 -0.01 0.54 16 16 C -0.09 -1.04 3.09 -89.02 -0.28 -1.32 16 17 H 0.10 1.21 7.67 -51.93 -0.40 0.81 16 18 C -0.06 -0.59 6.95 37.74 0.26 -0.33 16 19 S -0.31 -3.55 23.26 -107.50 -2.50 -6.05 16 20 C -0.05 -0.55 6.50 37.74 0.25 -0.30 16 21 C -0.06 -0.71 0.85 -152.91 -0.13 -0.84 16 22 C -0.13 -1.53 7.99 37.16 0.30 -1.24 16 23 C 0.04 0.54 5.45 -2.12 -0.01 0.53 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 1.22 7.12 -51.93 -0.37 0.85 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.03 0.91 7.63 -51.93 -0.40 0.51 16 28 H 0.01 0.22 8.14 -51.92 -0.42 -0.21 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.07 1.16 8.01 -51.93 -0.42 0.74 16 31 H 0.02 0.33 7.64 -51.93 -0.40 -0.06 16 32 H 0.09 1.30 7.89 -51.93 -0.41 0.89 16 33 H 0.04 0.52 6.87 -51.93 -0.36 0.17 16 34 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 35 H 0.09 0.87 7.32 -51.93 -0.38 0.49 16 36 H 0.09 0.85 7.31 -51.93 -0.38 0.47 16 37 H 0.10 0.96 7.82 -51.93 -0.41 0.55 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.15 7.86 -51.93 -0.41 0.75 16 42 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -29.93 332.73 -10.44 -40.37 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -7.55 Total: -2.50 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -0.04 Total: -18.39 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.34 Total: -35.23 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.50 Total: -6.05 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.93 -10.44 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653213631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.014 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds