Wall clock time and date at job start Mon Mar 30 2020 01:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47077 * 2 1 4 4 C 1.53003 * 109.47166 * 240.00357 * 2 1 3 5 5 C 1.50694 * 109.47531 * 64.99614 * 4 2 1 6 6 H 1.08007 * 119.99857 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00307 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99928 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00336 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47395 * 59.99889 * 9 7 5 11 11 H 1.48500 * 109.47003 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46928 * 299.99967 * 9 7 5 13 13 C 1.52995 * 109.47023 * 119.99768 * 2 1 3 14 14 N 1.46904 * 109.46992 * 185.32417 * 13 2 1 15 15 C 1.48598 * 110.99957 * 79.96441 * 14 13 2 16 16 C 1.54449 * 104.50148 * 158.85654 * 15 14 13 17 17 H 1.09001 * 110.12819 * 94.91324 * 16 15 14 18 18 C 1.54114 * 108.81624 * 215.62397 * 16 15 14 19 19 S 1.83911 * 102.73250 * 140.73506 * 18 16 15 20 20 C 1.83910 * 94.80156 * 325.28044 * 19 18 16 21 21 C 1.53493 * 105.21688 * 336.23262 * 16 15 14 22 22 C 1.52999 * 110.06284 * 118.62788 * 21 16 15 23 23 C 1.48591 * 110.99984 * 195.39953 * 14 13 2 24 24 H 1.08996 * 109.47087 * 294.58158 * 1 2 3 25 25 H 1.09000 * 109.47022 * 54.57891 * 1 2 3 26 26 H 1.08998 * 109.46794 * 174.57458 * 1 2 3 27 27 H 1.08993 * 109.46923 * 185.00043 * 4 2 1 28 28 H 1.09008 * 109.46623 * 304.99539 * 4 2 1 29 29 H 0.97000 * 120.00067 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47054 * 65.33048 * 13 2 1 31 31 H 1.08994 * 109.47277 * 305.32422 * 13 2 1 32 32 H 1.08995 * 110.42543 * 277.61401 * 15 14 13 33 33 H 1.09003 * 110.42682 * 39.97698 * 15 14 13 34 34 H 1.09010 * 110.75848 * 259.04127 * 18 16 15 35 35 H 1.09000 * 110.75857 * 22.42026 * 18 16 15 36 36 H 1.08997 * 110.75830 * 276.41110 * 20 19 18 37 37 H 1.09007 * 110.75523 * 153.02777 * 20 19 18 38 38 H 1.08998 * 109.47296 * 185.43914 * 22 21 16 39 39 H 1.08999 * 109.47179 * 305.43858 * 22 21 16 40 40 H 1.08999 * 109.47439 * 65.43416 * 22 21 16 41 41 H 1.09006 * 110.43116 * 82.39386 * 23 14 13 42 42 H 1.09001 * 110.43132 * 319.90642 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0570 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6748 -1.5198 -3.8513 9 14 1.4988 0.5628 -5.2497 10 1 2.0918 1.9228 -5.1872 11 1 1.9927 -0.1379 -6.4622 12 1 0.0189 0.6704 -5.3090 13 6 2.0400 -0.7212 1.2492 14 7 3.5034 -0.6109 1.3152 15 6 3.9140 0.7132 1.8502 16 6 5.3536 0.4930 2.3646 17 1 6.0738 0.7799 1.5984 18 6 5.5640 1.3435 3.6325 19 16 6.5611 0.2315 4.7057 20 6 5.7414 -1.3117 4.1321 21 6 5.4543 -1.0122 2.6479 22 6 6.5341 -1.6413 1.7652 23 6 4.0679 -1.5870 2.2829 24 1 -0.3633 0.4275 0.9345 25 1 -0.3633 0.5956 -0.8375 26 1 -0.3633 -1.0231 -0.0972 27 1 3.1263 -0.7994 -1.2056 28 1 1.6054 -1.7198 -1.2952 29 1 2.9214 -1.8431 -4.7319 30 1 1.7567 -1.7727 1.2028 31 1 1.6009 -0.2654 2.1366 32 1 3.9032 1.4631 1.0593 33 1 3.2578 1.0136 2.6671 34 1 6.1169 2.2537 3.3999 35 1 4.6091 1.5796 4.1022 36 1 4.8137 -1.4823 4.6783 37 1 6.4122 -2.1652 4.2313 38 1 6.5318 -2.7225 1.9031 39 1 6.3306 -1.4079 0.7201 40 1 7.5093 -1.2416 2.0434 41 1 4.1729 -2.5670 1.8173 42 1 3.4374 -1.6517 3.1697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653213631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:47 Heat of formation + Delta-G solvation = -31.002495 kcal Electronic energy + Delta-G solvation = -19380.555013 eV Core-core repulsion = 16677.948357 eV Total energy + Delta-G solvation = -2702.606656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.94951 -37.57319 -35.04071 -33.64761 -32.81580 -29.11603 -28.55354 -27.69245 -27.10491 -25.20821 -23.86598 -22.37622 -20.66589 -19.66366 -18.45226 -17.43316 -16.73585 -16.56917 -16.50028 -15.78572 -15.40626 -15.12938 -14.66550 -14.25720 -14.10963 -14.01224 -13.74947 -13.52609 -13.26117 -12.98014 -12.89074 -12.76285 -12.66281 -12.55706 -12.37348 -12.19869 -12.00940 -11.94902 -11.82655 -11.56043 -11.40399 -10.96609 -10.86636 -10.69673 -10.44851 -9.21607 -8.73942 -8.10099 -6.18424 0.91486 1.29042 1.40651 1.43019 1.50468 2.45505 2.99866 3.22849 3.43929 3.61188 3.63923 3.85524 4.05160 4.14103 4.18347 4.25870 4.35890 4.53186 4.56495 4.61144 4.62656 4.66177 4.70230 4.77308 4.83532 4.87914 4.91122 5.03523 5.05847 5.12975 5.19258 5.31074 5.37095 5.45413 5.51975 5.66924 5.93781 6.02571 6.04427 6.23480 6.39737 7.00099 7.48724 9.01166 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028005 B = 0.004373 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.591265 B = 6401.265918 C = 6669.123656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 H 0.049 0.951 4 C 0.048 3.952 5 C -0.529 4.529 6 H 0.055 0.945 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.954 3.046 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.063 3.937 14 N -0.525 5.525 15 C 0.043 3.957 16 C -0.084 4.084 17 H 0.087 0.913 18 C -0.047 4.047 19 S -0.335 6.335 20 C -0.042 4.042 21 C -0.057 4.057 22 C -0.128 4.128 23 C 0.044 3.956 24 H 0.064 0.936 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.001 0.999 28 H -0.023 1.023 29 H 0.259 0.741 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.565 2.554 17.568 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.093 4.093 3 H 0.068 0.932 4 C 0.011 3.989 5 C -0.567 4.567 6 H 0.074 0.926 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.065 4.065 14 N -0.248 5.248 15 C -0.086 4.086 16 C -0.105 4.105 17 H 0.105 0.895 18 C -0.195 4.195 19 S -0.107 6.107 20 C -0.190 4.190 21 C -0.059 4.059 22 C -0.186 4.186 23 C -0.084 4.084 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.020 0.980 28 H -0.005 1.005 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.740 2.569 17.740 18.821 hybrid contribution -1.367 0.090 -1.334 1.912 sum 4.372 2.659 16.405 17.185 Atomic orbital electron populations 1.21627 0.95094 1.00920 1.00810 1.21004 0.95255 0.98421 0.94584 0.93233 1.18833 0.95217 0.93229 0.91611 1.21711 1.34057 1.08394 0.92577 0.92636 1.25874 0.95448 0.96055 1.02344 1.70113 1.40490 1.22922 1.23944 0.85676 0.78861 0.78866 0.78684 1.19457 1.21169 1.19334 1.22246 0.87127 1.00256 0.96887 1.65301 1.10784 1.03630 1.45083 1.23323 0.94624 0.92380 0.98230 1.22412 0.97580 0.93219 0.97278 0.89508 1.24262 1.01826 0.99321 0.94057 1.88015 1.54872 1.07450 1.60334 1.24339 1.03158 0.96491 0.95059 1.21703 0.95831 0.94348 0.94067 1.21813 0.97392 1.00749 0.98615 1.23388 0.93880 0.96755 0.94425 0.91684 0.93756 0.94028 0.98015 1.00489 0.93223 0.92127 0.93238 0.91277 0.92353 0.86665 0.88187 0.88203 0.86488 0.91441 0.93644 0.91593 0.90682 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 8.91 71.98 0.64 -3.92 16 2 C -0.07 -2.95 2.43 -10.79 -0.03 -2.98 16 3 H 0.05 2.02 7.59 -2.39 -0.02 2.01 16 4 C 0.05 2.55 4.40 29.85 0.13 2.68 16 5 C -0.53 -30.21 8.47 25.60 0.22 -29.99 16 6 H 0.06 3.05 7.06 -2.91 -0.02 3.03 16 7 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 8 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 9 Si 0.95 45.02 29.54 68.60 2.03 47.05 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 C 0.06 2.05 4.26 86.30 0.37 2.42 16 14 N -0.52 -16.52 4.69 -881.00 -4.13 -20.65 16 15 C 0.04 1.14 5.58 86.47 0.48 1.62 16 16 C -0.08 -1.89 3.09 -9.76 -0.03 -1.92 16 17 H 0.09 2.14 7.67 -2.39 -0.02 2.12 16 18 C -0.05 -0.86 6.95 72.36 0.50 -0.36 16 19 S -0.33 -6.96 23.26 -56.49 -1.31 -8.27 16 20 C -0.04 -0.76 6.50 72.36 0.47 -0.29 16 21 C -0.06 -1.24 0.85 -51.14 -0.04 -1.28 16 22 C -0.13 -2.93 7.99 71.98 0.57 -2.36 16 23 C 0.04 1.11 5.45 86.47 0.47 1.58 16 24 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.04 1.72 7.12 -2.39 -0.02 1.70 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.00 0.08 7.63 -2.39 -0.02 0.07 16 28 H -0.02 -1.36 8.14 -2.38 -0.02 -1.38 16 29 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.06 2.04 8.01 -2.38 -0.02 2.02 16 31 H 0.05 1.35 7.64 -2.39 -0.02 1.33 16 32 H 0.07 2.04 7.89 -2.39 -0.02 2.02 16 33 H 0.06 1.32 6.87 -2.39 -0.02 1.31 16 34 H 0.11 1.88 8.14 -2.38 -0.02 1.87 16 35 H 0.10 1.66 7.32 -2.39 -0.02 1.64 16 36 H 0.10 1.60 7.31 -2.39 -0.02 1.58 16 37 H 0.12 1.83 7.82 -2.38 -0.02 1.82 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 2.01 7.86 -2.38 -0.02 1.99 16 42 H 0.06 1.24 7.18 -2.39 -0.02 1.22 16 Total: -1.00 -65.38 332.73 2.05 -63.34 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.96 Total: 10.56 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 4.22 Total: -34.36 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -3.85 Total: -78.32 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: -6.96 SS G_CDS: -1.31 Total: -8.27 kcal Total: -65.38 2.05 -63.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653213631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.337 kcal (2) G-P(sol) polarization free energy of solvation -65.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds