Wall clock time and date at job start Mon Mar 30 2020 01:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47664 * 2 1 4 4 C 1.53006 * 109.47137 * 120.00181 * 2 1 3 5 5 C 1.50703 * 109.47007 * 294.99511 * 4 2 1 6 6 H 1.08005 * 119.99695 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00129 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99778 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99755 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47374 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47113 * 120.00447 * 9 7 5 12 12 H 1.48502 * 109.46754 * 240.00010 * 9 7 5 13 13 C 1.53007 * 109.47051 * 239.99568 * 2 1 3 14 14 N 1.46904 * 109.46643 * 65.00144 * 13 2 1 15 15 C 1.48594 * 110.99847 * 54.56856 * 14 13 2 16 16 C 1.54455 * 104.49874 * 158.85490 * 15 14 13 17 17 H 1.09000 * 110.03731 * 94.86212 * 16 15 14 18 18 C 1.54119 * 108.81888 * 215.62111 * 16 15 14 19 19 S 1.83905 * 102.72970 * 140.73994 * 18 16 15 20 20 C 1.83908 * 94.80670 * 325.28101 * 19 18 16 21 21 C 1.53492 * 105.21637 * 336.23324 * 16 15 14 22 22 C 1.52997 * 110.05978 * 118.62283 * 21 16 15 23 23 C 1.48598 * 110.99456 * 170.00138 * 14 13 2 24 24 H 1.09003 * 109.47016 * 59.99641 * 1 2 3 25 25 H 1.08993 * 109.47284 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46502 * 300.00308 * 1 2 3 27 27 H 1.08996 * 109.47120 * 54.99266 * 4 2 1 28 28 H 1.09004 * 109.47283 * 174.99640 * 4 2 1 29 29 H 0.96999 * 119.99435 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.46903 * 305.00238 * 13 2 1 31 31 H 1.08995 * 109.47396 * 185.00423 * 13 2 1 32 32 H 1.09005 * 110.42966 * 40.10446 * 15 14 13 33 33 H 1.08996 * 110.53195 * 277.66086 * 15 14 13 34 34 H 1.08997 * 110.75827 * 22.42701 * 18 16 15 35 35 H 1.08994 * 110.91532 * 259.12281 * 18 16 15 36 36 H 1.08997 * 110.75853 * 276.41050 * 20 19 18 37 37 H 1.09001 * 110.75674 * 153.02850 * 20 19 18 38 38 H 1.09002 * 109.47043 * 303.42287 * 22 21 16 39 39 H 1.08994 * 109.47577 * 63.43138 * 22 21 16 40 40 H 1.09002 * 109.46988 * 183.43198 * 22 21 16 41 41 H 1.08999 * 110.42857 * 82.39082 * 23 14 13 42 42 H 1.09000 * 110.42922 * 319.89549 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0808 0.9746 2.3757 7 6 1.9924 -0.4022 3.7284 8 7 2.6755 -1.5193 3.8512 9 14 1.4977 0.5623 5.2497 10 1 0.7404 1.7734 4.8434 11 1 0.6434 -0.2870 6.1181 12 1 2.7156 0.9668 5.9969 13 6 2.0400 -0.7214 -1.2492 14 7 1.6513 0.0373 -2.4456 15 6 2.1168 1.4457 -2.3575 16 6 2.1387 1.9381 -3.8214 17 1 1.2051 2.4487 -4.0577 18 6 3.3300 2.8984 -4.0051 19 16 3.9609 2.4472 -5.6726 20 6 3.5727 0.6573 -5.5050 21 6 2.2763 0.6676 -4.6717 22 6 1.0603 0.5149 -5.5875 23 6 2.3271 -0.4958 -3.6570 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 1.6053 -1.7198 1.2952 28 1 3.1264 -0.7996 1.2056 29 1 2.9228 -1.8422 4.7318 30 1 1.6053 -1.7199 -1.2951 31 1 3.1263 -0.7997 -1.2056 32 1 3.1170 1.4896 -1.9264 33 1 1.4219 2.0417 -1.7660 34 1 4.0897 2.7217 -3.2437 35 1 2.9993 3.9368 -3.9851 36 1 4.3696 0.1373 -4.9734 37 1 3.4003 0.2063 -6.4822 38 1 0.1513 0.5057 -4.9860 39 1 1.0249 1.3501 -6.2869 40 1 1.1383 -0.4203 -6.1421 41 1 1.7886 -1.3612 -4.0432 42 1 3.3605 -0.7590 -3.4314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653213632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:49 Heat of formation + Delta-G solvation = -32.467291 kcal Electronic energy + Delta-G solvation = -19247.143240 eV Core-core repulsion = 16544.473065 eV Total energy + Delta-G solvation = -2702.670175 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02175 -37.67688 -35.14946 -33.52970 -32.84229 -29.09531 -28.57825 -27.71366 -27.08673 -25.58680 -23.70877 -22.44029 -20.68048 -19.52366 -18.51345 -17.46497 -16.84423 -16.66794 -16.38608 -15.86047 -15.58771 -15.14129 -14.65613 -14.25367 -14.24060 -14.03461 -13.74256 -13.50574 -13.29178 -13.01936 -12.91103 -12.78670 -12.61112 -12.56056 -12.29462 -12.21711 -12.01056 -11.90122 -11.85924 -11.59139 -11.42012 -11.07981 -10.96984 -10.67513 -10.54337 -9.40140 -8.75991 -8.18229 -6.27241 0.90041 1.28010 1.39343 1.40189 1.52805 2.41404 2.95357 3.15627 3.41634 3.60553 3.64779 3.85066 4.05477 4.11047 4.19632 4.23277 4.32668 4.51051 4.51366 4.60891 4.62038 4.66118 4.70768 4.85584 4.87271 4.91606 4.93450 5.01744 5.09694 5.14158 5.20166 5.28092 5.40590 5.44959 5.49526 5.54019 5.77482 5.87813 5.92964 6.02950 6.30266 6.88945 7.41331 8.94081 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033377 B = 0.003892 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.693720 B = 7191.724206 C = 7438.741139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 H 0.055 0.945 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.062 3.938 14 N -0.505 5.505 15 C 0.038 3.962 16 C -0.081 4.081 17 H 0.103 0.897 18 C -0.052 4.052 19 S -0.336 6.336 20 C -0.047 4.047 21 C -0.057 4.057 22 C -0.125 4.125 23 C 0.039 3.961 24 H 0.066 0.934 25 H 0.036 0.964 26 H 0.037 0.963 27 H -0.010 1.010 28 H -0.016 1.016 29 H 0.262 0.738 30 H 0.069 0.931 31 H 0.021 0.979 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 5.849 -20.000 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.784 3.216 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.206 1.206 13 C -0.067 4.067 14 N -0.228 5.228 15 C -0.091 4.091 16 C -0.101 4.101 17 H 0.121 0.879 18 C -0.201 4.201 19 S -0.108 6.108 20 C -0.195 4.195 21 C -0.059 4.059 22 C -0.183 4.183 23 C -0.090 4.090 24 H 0.085 0.915 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.008 0.992 28 H 0.002 0.998 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.107 0.893 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.225 6.374 -20.844 21.831 hybrid contribution 0.631 -0.593 2.329 2.485 sum -0.593 5.781 -18.515 19.405 Atomic orbital electron populations 1.21487 0.94565 1.00527 1.00455 1.21064 0.96769 0.98462 0.92957 0.92618 1.19018 0.93950 0.94741 0.92804 1.21655 1.34317 1.08505 0.92025 0.92095 1.25932 0.95258 0.96062 1.02613 1.70108 1.40377 1.22971 1.24199 0.85479 0.78063 0.78951 0.79065 1.18502 1.20560 1.20606 1.22222 0.96857 0.97700 0.89889 1.65450 1.53164 1.02014 1.02147 1.23323 0.98990 0.90633 0.96147 1.22448 0.99198 0.94290 0.94209 0.87875 1.24281 0.98744 1.03415 0.93622 1.88030 1.84785 1.12178 1.25824 1.24382 0.98470 0.92293 1.04335 1.21745 0.95661 0.94047 0.94481 1.21809 0.95600 1.02540 0.98315 1.23484 0.97408 0.97820 0.90282 0.91548 0.94448 0.94348 0.99159 0.99795 0.92967 0.91256 0.96092 0.94450 0.89970 0.89506 0.86379 0.89259 0.86049 0.92033 0.91726 0.91227 0.88928 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.21 8.89 71.98 0.64 -3.57 16 2 C -0.07 -2.95 2.07 -10.79 -0.02 -2.97 16 3 H 0.06 2.23 6.57 -2.39 -0.02 2.21 16 4 C 0.03 1.70 4.45 29.85 0.13 1.83 16 5 C -0.53 -29.61 8.41 25.60 0.22 -29.39 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 8 N -0.94 -57.11 13.29 21.45 0.28 -56.82 16 9 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 13 C 0.06 2.07 4.45 86.30 0.38 2.45 16 14 N -0.50 -13.46 4.94 -880.96 -4.36 -17.81 16 15 C 0.04 0.94 4.59 86.47 0.40 1.34 16 16 C -0.08 -1.55 3.09 -9.76 -0.03 -1.58 16 17 H 0.10 1.86 7.67 -2.39 -0.02 1.85 16 18 C -0.05 -0.97 6.95 72.36 0.50 -0.47 16 19 S -0.34 -6.85 23.26 -56.49 -1.31 -8.17 16 20 C -0.05 -0.78 6.50 72.36 0.47 -0.31 16 21 C -0.06 -1.01 0.85 -51.14 -0.04 -1.05 16 22 C -0.13 -1.90 7.99 71.98 0.57 -1.32 16 23 C 0.04 0.83 5.54 86.47 0.48 1.31 16 24 H 0.07 2.13 7.75 -2.39 -0.02 2.11 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 1.53 6.95 -2.38 -0.02 1.52 16 27 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.02 0.74 7.88 -2.39 -0.02 0.72 16 32 H 0.04 1.01 7.18 -2.38 -0.02 0.99 16 33 H 0.08 2.12 7.57 -2.39 -0.02 2.10 16 34 H 0.09 1.71 7.31 -2.39 -0.02 1.69 16 35 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 1.53 7.31 -2.39 -0.02 1.51 16 37 H 0.12 1.64 7.82 -2.39 -0.02 1.62 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.09 1.82 7.86 -2.39 -0.02 1.80 16 42 H 0.04 0.94 7.00 -2.39 -0.02 0.92 16 Total: -1.00 -62.86 330.97 1.77 -61.10 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.96 Total: 8.74 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 4.16 Total: -33.37 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -4.07 Total: -74.64 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -1.31 Total: -8.17 kcal Total: -62.86 1.77 -61.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653213632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.628 kcal (2) G-P(sol) polarization free energy of solvation -62.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds