Wall clock time and date at job start Mon Mar 30 2020 01:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00096 * 2 1 4 4 H 1.48495 * 109.47165 * 270.00451 * 3 2 1 5 5 H 1.48501 * 109.47070 * 30.00129 * 3 2 1 6 6 H 1.48498 * 109.47122 * 150.00122 * 3 2 1 7 7 C 1.37872 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00234 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00149 * 179.97438 * 7 2 1 10 10 O 1.42900 * 113.25519 * 312.95183 * 9 7 2 11 11 C 1.53511 * 114.17530 * 179.97438 * 9 7 2 12 12 N 1.47479 * 87.93340 * 220.14305 * 11 9 7 13 13 C 1.46903 * 111.00406 * 138.70422 * 12 11 9 14 14 C 1.52992 * 109.47232 * 169.99760 * 13 12 11 15 15 O 1.42904 * 109.47366 * 64.99847 * 14 13 12 16 16 C 1.42897 * 113.99972 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.46949 * 179.97438 * 16 15 14 18 18 C 1.54894 * 110.48128 * 68.24686 * 17 16 15 19 19 C 1.55238 * 102.58338 * 156.67574 * 18 17 16 20 20 C 1.54266 * 104.23333 * 322.08174 * 19 18 17 21 21 C 1.53869 * 106.59800 * 23.61579 * 20 19 18 22 22 C 1.47474 * 87.83950 * 27.00897 * 12 11 9 23 23 H 0.97001 * 120.00124 * 0.02562 * 1 2 3 24 24 H 0.96704 * 114.00240 * 47.05070 * 10 9 7 25 25 H 1.08994 * 113.47740 * 105.37019 * 11 9 7 26 26 H 1.09003 * 113.52675 * 334.91156 * 11 9 7 27 27 H 1.09004 * 109.47002 * 49.99737 * 13 12 11 28 28 H 1.09000 * 109.46813 * 289.99770 * 13 12 11 29 29 H 1.08997 * 109.47542 * 304.99738 * 14 13 12 30 30 H 1.09005 * 109.46915 * 184.99778 * 14 13 12 31 31 H 1.09002 * 109.47023 * 60.00888 * 16 15 14 32 32 H 1.08991 * 109.47491 * 300.00096 * 16 15 14 33 33 H 1.09002 * 110.43542 * 305.70535 * 17 16 15 34 34 H 1.08996 * 110.75388 * 275.05927 * 18 17 16 35 35 H 1.08993 * 110.76071 * 38.44153 * 18 17 16 36 36 H 1.09005 * 110.46917 * 203.39204 * 19 18 17 37 37 H 1.09007 * 110.58541 * 80.83124 * 19 18 17 38 38 H 1.08999 * 110.03060 * 264.32313 * 20 19 18 39 39 H 1.09006 * 110.06829 * 142.91691 * 20 19 18 40 40 H 1.09001 * 110.02983 * 240.71432 * 21 20 19 41 41 H 1.08995 * 110.03881 * 119.28625 * 21 20 19 42 42 H 1.08998 * 113.47954 * 87.75518 * 22 12 11 43 43 H 1.09001 * 113.47967 * 218.23045 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 8 4.0753 -0.2993 -0.9621 11 6 4.1400 -2.5946 -0.0010 12 7 5.1465 -2.0846 0.9486 13 6 5.4213 -3.0690 2.0038 14 6 6.6356 -2.6182 2.8181 15 8 6.3245 -1.4045 3.5052 16 6 7.3972 -0.8952 4.3001 17 6 6.9543 0.3992 4.9853 18 6 5.8696 0.1045 6.0511 19 6 5.9941 1.3222 7.0059 20 6 7.5103 1.5987 7.0723 21 6 8.1208 1.0118 5.7876 22 6 4.1448 -1.0981 1.3940 23 1 -0.4850 0.8400 -0.0004 24 1 3.6777 0.5822 -0.9596 25 1 4.5592 -2.8825 -0.9651 26 1 3.4926 -3.3621 0.4231 27 1 5.6272 -4.0390 1.5511 28 1 4.5542 -3.1506 2.6593 29 1 7.4798 -2.4509 2.1493 30 1 6.8937 -3.3902 3.5431 31 1 8.2574 -0.6922 3.6623 32 1 7.6708 -1.6315 5.0558 33 1 6.5821 1.1115 4.2489 34 1 4.8802 0.0675 5.5952 35 1 6.0882 -0.8239 6.5784 36 1 5.6082 1.0726 7.9943 37 1 5.4665 2.1846 6.5981 38 1 7.9408 1.1110 7.9470 39 1 7.6932 2.6724 7.1159 40 1 8.8476 0.2393 6.0387 41 1 8.5993 1.8007 5.2074 42 1 3.4979 -1.4655 2.1907 43 1 4.5680 -0.1176 1.6122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654251585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:43 Heat of formation + Delta-G solvation = -60.115317 kcal Electronic energy + Delta-G solvation = -21484.205233 eV Core-core repulsion = 18337.583279 eV Total energy + Delta-G solvation = -3146.621954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.49290 -38.68110 -36.97266 -34.83598 -32.37439 -31.30991 -29.68336 -28.74247 -26.90299 -25.06191 -24.42579 -23.77182 -21.03278 -20.58374 -19.83035 -19.02347 -17.27886 -16.77033 -16.11891 -15.95967 -15.59336 -15.30134 -14.82712 -14.21650 -14.03111 -13.68746 -13.45633 -13.12744 -12.88920 -12.63443 -12.31838 -12.04385 -11.74118 -11.66946 -11.37925 -11.17954 -11.10850 -10.91365 -10.72587 -10.66305 -10.54874 -10.47213 -10.37966 -10.26179 -9.88684 -9.40249 -9.15021 -8.84808 -8.44339 -8.00843 -6.28084 -4.31301 3.11778 3.23032 3.26835 3.78863 4.18767 4.51975 4.54279 4.68603 4.69997 4.89655 5.11579 5.25953 5.32461 5.34193 5.36827 5.39015 5.48607 5.50984 5.55810 5.62967 5.68051 5.70711 5.78849 5.84204 5.91698 5.93695 5.99115 6.03428 6.18276 6.20951 6.25150 6.34590 6.37637 6.56833 6.83681 6.97760 7.07251 7.38884 7.44809 7.87529 8.18875 8.73855 8.76868 9.32065 10.84598 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.005285 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.620467 B = 5297.154030 C = 6255.030777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.078 3.922 3 Si 0.860 3.140 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.533 4.533 8 H 0.085 0.915 9 C 0.198 3.802 10 O -0.549 6.549 11 C 0.015 3.985 12 N -0.468 5.468 13 C 0.017 3.983 14 C 0.075 3.925 15 O -0.374 6.374 16 C 0.071 3.929 17 C -0.093 4.093 18 C -0.114 4.114 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.014 4.014 23 H 0.268 0.732 24 H 0.347 0.653 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.587 -0.352 12.365 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.126 4.126 3 Si 0.689 3.311 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.177 1.177 7 C -0.570 4.570 8 H 0.103 0.897 9 C 0.157 3.843 10 O -0.360 6.360 11 C -0.113 4.113 12 N -0.191 5.191 13 C -0.112 4.112 14 C -0.002 4.002 15 O -0.293 6.293 16 C -0.006 4.006 17 C -0.111 4.111 18 C -0.151 4.151 19 C -0.165 4.165 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.143 4.143 23 H 0.078 0.922 24 H 0.199 0.801 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.288 -0.478 12.024 19.455 hybrid contribution -0.433 0.844 0.572 1.108 sum 14.855 0.366 12.596 19.480 Atomic orbital electron populations 1.69874 1.06107 1.27392 1.48702 1.24992 0.94886 0.99079 0.93688 0.87296 0.80720 0.84126 0.79005 1.19530 1.21379 1.17693 1.21330 0.88395 0.95321 1.51994 0.89653 1.20153 0.91785 0.87396 0.84987 1.86451 1.64452 1.24594 1.60482 1.23920 0.92697 0.97660 0.97062 1.68887 1.31160 1.09185 1.09826 1.22694 0.97431 0.96493 0.94594 1.22443 0.98068 0.85904 0.93761 1.87988 1.37493 1.40584 1.63252 1.22464 0.90049 0.94749 0.93292 1.21984 0.95903 0.96089 0.97126 1.22545 0.99432 0.97453 0.95707 1.22446 0.95833 0.98664 0.99585 1.22109 0.95918 1.00544 0.97488 1.22115 0.97390 0.99890 0.96112 1.24823 0.92332 0.96861 1.00325 0.92164 0.80137 0.90675 0.91093 0.90315 0.93106 0.93002 0.94015 0.93806 0.93962 0.89818 0.90844 0.91749 0.91870 0.91575 0.92038 0.91981 0.91855 0.91684 0.91204 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.26 13.96 55.43 0.77 -25.49 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.86 20.73 24.41 -169.99 -4.15 16.58 16 4 H -0.27 -6.25 7.06 56.52 0.40 -5.86 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.25 -5.92 5.46 56.52 0.31 -5.61 16 7 C -0.53 -14.93 9.27 -34.44 -0.32 -15.25 16 8 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 9 C 0.20 4.93 1.09 -91.24 -0.10 4.83 16 10 O -0.55 -14.13 13.32 -35.23 -0.47 -14.60 16 11 C 0.02 0.33 7.09 -7.55 -0.05 0.28 16 12 N -0.47 -9.57 6.31 -244.63 -1.54 -11.11 16 13 C 0.02 0.28 5.28 -3.83 -0.02 0.26 16 14 C 0.08 1.10 6.28 37.15 0.23 1.33 16 15 O -0.37 -6.02 9.56 -35.23 -0.34 -6.36 16 16 C 0.07 0.90 5.21 37.16 0.19 1.10 16 17 C -0.09 -1.11 3.13 -88.96 -0.28 -1.39 16 18 C -0.11 -1.34 6.24 -24.55 -0.15 -1.49 16 19 C -0.13 -1.28 6.84 -24.88 -0.17 -1.45 16 20 C -0.12 -1.09 6.80 -25.62 -0.17 -1.27 16 21 C -0.12 -1.12 6.37 -25.62 -0.16 -1.28 16 22 C -0.01 -0.32 5.92 -7.54 -0.04 -0.36 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 24 H 0.35 8.60 3.17 45.56 0.14 8.74 16 25 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 26 H 0.07 1.44 7.87 -51.93 -0.41 1.03 16 27 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 28 H 0.05 0.86 7.30 -51.93 -0.38 0.48 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.47 8.06 -51.93 -0.42 0.05 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.72 8.00 -51.93 -0.42 0.30 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.55 7.84 -51.93 -0.41 0.14 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.60 7.38 -51.93 -0.38 1.21 16 43 H 0.07 1.63 7.11 -51.93 -0.37 1.26 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -30.45 332.93 -9.21 -39.67 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -7.36 Total: 8.89 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -1.15 Total: -12.60 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.77 Total: -36.60 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.81 Total: -20.96 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.15 Total: 16.58 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.45 -9.21 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654251585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.447 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds