Wall clock time and date at job start Mon Mar 30 2020 01:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00096 * 2 1 4 4 H 1.48495 * 109.47165 * 270.00451 * 3 2 1 5 5 H 1.48501 * 109.47070 * 30.00129 * 3 2 1 6 6 H 1.48498 * 109.47122 * 150.00122 * 3 2 1 7 7 C 1.37872 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00234 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00149 * 179.97438 * 7 2 1 10 10 O 1.42900 * 113.25519 * 312.95183 * 9 7 2 11 11 C 1.53511 * 114.17530 * 179.97438 * 9 7 2 12 12 N 1.47479 * 87.93340 * 220.14305 * 11 9 7 13 13 C 1.46903 * 111.00406 * 138.70422 * 12 11 9 14 14 C 1.52992 * 109.47232 * 169.99760 * 13 12 11 15 15 O 1.42904 * 109.47366 * 64.99847 * 14 13 12 16 16 C 1.42897 * 113.99972 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.46949 * 179.97438 * 16 15 14 18 18 C 1.54894 * 110.48128 * 68.24686 * 17 16 15 19 19 C 1.55238 * 102.58338 * 156.67574 * 18 17 16 20 20 C 1.54266 * 104.23333 * 322.08174 * 19 18 17 21 21 C 1.53869 * 106.59800 * 23.61579 * 20 19 18 22 22 C 1.47474 * 87.83950 * 27.00897 * 12 11 9 23 23 H 0.97001 * 120.00124 * 0.02562 * 1 2 3 24 24 H 0.96704 * 114.00240 * 47.05070 * 10 9 7 25 25 H 1.08994 * 113.47740 * 105.37019 * 11 9 7 26 26 H 1.09003 * 113.52675 * 334.91156 * 11 9 7 27 27 H 1.09004 * 109.47002 * 49.99737 * 13 12 11 28 28 H 1.09000 * 109.46813 * 289.99770 * 13 12 11 29 29 H 1.08997 * 109.47542 * 304.99738 * 14 13 12 30 30 H 1.09005 * 109.46915 * 184.99778 * 14 13 12 31 31 H 1.09002 * 109.47023 * 60.00888 * 16 15 14 32 32 H 1.08991 * 109.47491 * 300.00096 * 16 15 14 33 33 H 1.09002 * 110.43542 * 305.70535 * 17 16 15 34 34 H 1.08996 * 110.75388 * 275.05927 * 18 17 16 35 35 H 1.08993 * 110.76071 * 38.44153 * 18 17 16 36 36 H 1.09005 * 110.46917 * 203.39204 * 19 18 17 37 37 H 1.09007 * 110.58541 * 80.83124 * 19 18 17 38 38 H 1.08999 * 110.03060 * 264.32313 * 20 19 18 39 39 H 1.09006 * 110.06829 * 142.91691 * 20 19 18 40 40 H 1.09001 * 110.02983 * 240.71432 * 21 20 19 41 41 H 1.08995 * 110.03881 * 119.28625 * 21 20 19 42 42 H 1.08998 * 113.47954 * 87.75518 * 22 12 11 43 43 H 1.09001 * 113.47967 * 218.23045 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 8 4.0753 -0.2993 -0.9621 11 6 4.1400 -2.5946 -0.0010 12 7 5.1465 -2.0846 0.9486 13 6 5.4213 -3.0690 2.0038 14 6 6.6356 -2.6182 2.8181 15 8 6.3245 -1.4045 3.5052 16 6 7.3972 -0.8952 4.3001 17 6 6.9543 0.3992 4.9853 18 6 5.8696 0.1045 6.0511 19 6 5.9941 1.3222 7.0059 20 6 7.5103 1.5987 7.0723 21 6 8.1208 1.0118 5.7876 22 6 4.1448 -1.0981 1.3940 23 1 -0.4850 0.8400 -0.0004 24 1 3.6777 0.5822 -0.9596 25 1 4.5592 -2.8825 -0.9651 26 1 3.4926 -3.3621 0.4231 27 1 5.6272 -4.0390 1.5511 28 1 4.5542 -3.1506 2.6593 29 1 7.4798 -2.4509 2.1493 30 1 6.8937 -3.3902 3.5431 31 1 8.2574 -0.6922 3.6623 32 1 7.6708 -1.6315 5.0558 33 1 6.5821 1.1115 4.2489 34 1 4.8802 0.0675 5.5952 35 1 6.0882 -0.8239 6.5784 36 1 5.6082 1.0726 7.9943 37 1 5.4665 2.1846 6.5981 38 1 7.9408 1.1110 7.9470 39 1 7.6932 2.6724 7.1159 40 1 8.8476 0.2393 6.0387 41 1 8.5993 1.8007 5.2074 42 1 3.4979 -1.4655 2.1907 43 1 4.5680 -0.1176 1.6122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654251585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:42 Heat of formation + Delta-G solvation = -83.342278 kcal Electronic energy + Delta-G solvation = -21485.212429 eV Core-core repulsion = 18337.583279 eV Total energy + Delta-G solvation = -3147.629151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.21381 -39.65694 -38.05782 -36.67354 -34.55016 -32.56919 -30.81926 -29.55566 -28.74953 -26.84032 -25.78713 -25.04440 -22.47420 -21.40300 -20.91245 -20.69579 -19.35446 -18.19860 -17.75630 -17.28818 -16.65119 -16.40530 -16.13879 -15.82975 -15.40657 -15.22084 -14.86293 -14.73443 -14.24376 -14.02799 -13.86195 -13.60103 -13.27529 -13.01778 -12.66444 -12.41870 -12.26519 -12.10160 -12.05229 -11.95179 -11.85943 -11.77954 -11.56125 -11.50676 -11.27374 -11.11521 -10.93410 -10.48989 -10.34060 -9.73322 -8.46498 -6.55150 1.18169 1.27379 1.34318 2.14193 2.76674 2.77890 3.08414 3.53151 3.70654 3.70796 3.85476 3.90801 4.04880 4.23099 4.27637 4.30694 4.42542 4.47309 4.53546 4.55754 4.58009 4.64347 4.71465 4.75100 4.83021 4.85493 4.88938 4.93198 4.96881 5.04885 5.08856 5.14886 5.22330 5.31279 5.31958 5.38992 5.46657 5.48590 6.00451 6.22766 6.40771 6.48555 6.75651 7.12237 8.69526 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017800 B = 0.005285 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.620467 B = 5297.154030 C = 6255.030777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.027 3.973 3 Si 0.918 3.082 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.245 1.245 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.178 3.822 10 O -0.554 6.554 11 C 0.023 3.977 12 N -0.466 5.466 13 C 0.013 3.987 14 C 0.076 3.924 15 O -0.406 6.406 16 C 0.069 3.931 17 C -0.096 4.096 18 C -0.115 4.115 19 C -0.128 4.128 20 C -0.120 4.120 21 C -0.112 4.112 22 C 0.001 3.999 23 H 0.273 0.727 24 H 0.349 0.651 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.106 0.894 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.141 -0.251 13.487 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.174 4.174 3 Si 0.744 3.256 4 H -0.176 1.176 5 H -0.208 1.208 6 H -0.169 1.169 7 C -0.582 4.582 8 H 0.071 0.929 9 C 0.138 3.862 10 O -0.366 6.366 11 C -0.106 4.106 12 N -0.189 5.189 13 C -0.116 4.116 14 C 0.000 4.000 15 O -0.326 6.326 16 C -0.007 4.007 17 C -0.115 4.115 18 C -0.153 4.153 19 C -0.165 4.165 20 C -0.157 4.157 21 C -0.150 4.150 22 C -0.129 4.129 23 H 0.082 0.918 24 H 0.201 0.799 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.124 0.876 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.859 -0.390 13.144 22.178 hybrid contribution -1.270 0.715 0.229 1.475 sum 16.589 0.325 13.372 21.310 Atomic orbital electron populations 1.69997 1.07768 1.28623 1.50089 1.25776 0.95636 1.02746 0.93201 0.86320 0.79613 0.79643 0.80038 1.17627 1.20759 1.16939 1.21518 0.90391 0.94303 1.51974 0.92910 1.20320 0.90117 0.89583 0.86205 1.86442 1.64338 1.24870 1.60908 1.23856 0.92861 0.95822 0.98057 1.68818 1.29614 1.09704 1.10743 1.22855 0.98228 0.96722 0.93749 1.22473 0.96792 0.86439 0.94313 1.87956 1.39287 1.41373 1.63964 1.22622 0.89322 0.95259 0.93496 1.22006 0.97056 0.95569 0.96850 1.22526 0.97960 0.98713 0.96082 1.22451 0.97005 0.97493 0.99567 1.22113 0.94701 1.01232 0.97684 1.22101 0.96606 1.00294 0.95991 1.24516 0.92594 0.97206 0.98558 0.91805 0.79933 0.89795 0.90306 0.87605 0.93809 0.92812 0.90833 0.93299 0.91979 0.92417 0.93558 0.90958 0.90773 0.92429 0.90546 0.91213 0.90383 0.91336 0.91954 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.96 21.45 0.30 -56.02 16 2 C 0.03 1.54 5.47 84.65 0.46 2.00 16 3 Si 0.92 42.90 24.41 68.60 1.67 44.57 16 4 H -0.25 -10.96 7.06 99.48 0.70 -10.26 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.24 -11.08 5.46 99.48 0.54 -10.54 16 7 C -0.54 -31.18 9.27 25.60 0.24 -30.94 16 8 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 9 C 0.18 8.86 1.09 -11.19 -0.01 8.85 16 10 O -0.55 -28.00 13.32 -148.98 -1.98 -29.99 16 11 C 0.02 0.96 7.09 83.58 0.59 1.55 16 12 N -0.47 -18.38 6.31 -928.24 -5.85 -24.24 16 13 C 0.01 0.40 5.28 86.30 0.46 0.86 16 14 C 0.08 2.03 6.28 71.98 0.45 2.48 16 15 O -0.41 -12.49 9.56 -148.98 -1.42 -13.91 16 16 C 0.07 1.62 5.21 71.98 0.38 1.99 16 17 C -0.10 -2.21 3.13 -9.72 -0.03 -2.24 16 18 C -0.12 -2.63 6.24 32.01 0.20 -2.43 16 19 C -0.13 -2.39 6.84 31.79 0.22 -2.17 16 20 C -0.12 -1.83 6.80 31.32 0.21 -1.62 16 21 C -0.11 -1.89 6.37 31.32 0.20 -1.69 16 22 C 0.00 0.05 5.92 83.58 0.49 0.54 16 23 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 24 H 0.35 16.81 3.17 -74.05 -0.24 16.57 16 25 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 26 H 0.08 3.15 7.87 -2.39 -0.02 3.13 16 27 H 0.11 2.68 8.08 -2.38 -0.02 2.66 16 28 H 0.04 1.42 7.30 -2.39 -0.02 1.41 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.20 8.06 -2.39 -0.02 1.18 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.51 8.00 -2.39 -0.02 1.49 16 36 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.08 1.10 7.84 -2.39 -0.02 1.08 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 2.88 7.38 -2.39 -0.02 2.86 16 43 H 0.06 2.73 7.11 -2.39 -0.02 2.71 16 Total: -1.00 -66.05 332.93 -2.87 -68.92 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.56 Total: 33.49 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 3.86 Total: -22.83 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -5.56 Total: -80.25 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -3.41 Total: -43.90 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.67 Total: 44.57 kcal Total: -66.05 -2.87 -68.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654251585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.422 kcal (2) G-P(sol) polarization free energy of solvation -66.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds