Wall clock time and date at job start Mon Mar 30 2020 01:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00194 * 2 1 4 4 H 1.48503 * 109.47072 * 270.00153 * 3 2 1 5 5 H 1.48495 * 109.47508 * 30.00081 * 3 2 1 6 6 H 1.48504 * 109.47230 * 150.00363 * 3 2 1 7 7 C 1.37885 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99724 * 359.97438 * 7 2 1 9 9 C 1.50692 * 119.99928 * 179.97438 * 7 2 1 10 10 O 1.42903 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.42898 * 114.00316 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47393 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46793 * 66.85220 * 12 11 10 14 14 C 1.46938 * 110.99900 * 282.71809 * 13 12 11 15 15 C 1.53050 * 109.47924 * 175.11412 * 14 13 12 16 16 C 1.53127 * 109.32577 * 59.71581 * 15 14 13 17 17 C 1.53207 * 109.09288 * 301.79699 * 16 15 14 18 18 C 1.46183 * 110.99799 * 158.28567 * 13 12 11 19 19 C 1.54026 * 110.29215 * 306.64437 * 18 13 12 20 20 C 1.54596 * 103.89945 * 118.46114 * 19 18 13 21 21 O 1.44470 * 104.81244 * 23.91523 * 20 19 18 22 22 C 1.44545 * 105.36072 * 319.80871 * 21 20 19 23 23 H 0.96998 * 120.00112 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47741 * 59.99756 * 9 7 2 25 25 H 1.08999 * 109.47724 * 299.99562 * 9 7 2 26 26 H 1.08998 * 109.47374 * 59.99802 * 11 10 9 27 27 H 1.09001 * 109.47378 * 299.99901 * 11 10 9 28 28 H 1.09001 * 109.46882 * 306.85743 * 12 11 10 29 29 H 1.08994 * 109.47038 * 186.85057 * 12 11 10 30 30 H 1.08997 * 109.47522 * 55.11069 * 14 13 12 31 31 H 1.08997 * 109.46600 * 295.10637 * 14 13 12 32 32 H 1.09004 * 109.49297 * 299.75881 * 15 14 13 33 33 H 1.09005 * 109.51755 * 179.68940 * 15 14 13 34 34 H 1.08996 * 109.53411 * 61.68927 * 16 15 14 35 35 H 1.09003 * 109.53236 * 181.91528 * 16 15 14 36 36 H 1.09002 * 109.48113 * 176.65994 * 17 16 15 37 37 H 1.09001 * 109.48709 * 296.70997 * 17 16 15 38 38 H 1.09001 * 110.54571 * 237.07095 * 19 18 13 39 39 H 1.09007 * 110.54235 * 359.71401 * 19 18 13 40 40 H 1.08990 * 110.37089 * 142.74856 * 20 19 18 41 41 H 1.09003 * 110.37042 * 264.97068 * 20 19 18 42 42 H 1.08998 * 110.39143 * 281.21645 * 22 21 20 43 43 H 1.09003 * 110.38546 * 158.83274 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 8 3.9878 -2.5414 -0.0010 11 6 5.4123 -2.6543 -0.0021 12 6 5.8068 -4.1326 -0.0012 13 7 5.4060 -4.7471 -1.2739 14 6 3.9622 -5.0193 -1.2955 15 6 3.5624 -5.5442 -2.6765 16 6 4.3367 -6.8316 -2.9730 17 6 5.8392 -6.5396 -2.9049 18 6 6.1805 -5.9585 -1.5377 19 6 7.6886 -5.6580 -1.4495 20 6 8.1801 -6.5601 -0.2943 21 8 7.2146 -7.6327 -0.2269 22 6 5.9296 -7.0050 -0.4364 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6802 -0.8911 26 1 5.8158 -2.1704 0.8873 27 1 5.8144 -2.1711 -0.8926 28 1 5.3056 -4.6419 0.8219 29 1 6.8864 -4.2204 0.1205 30 1 3.4158 -4.1002 -1.0841 31 1 3.7222 -5.7668 -0.5394 32 1 3.7984 -4.7954 -3.4326 33 1 2.4923 -5.7517 -2.6915 34 1 4.0790 -7.5903 -2.2341 35 1 4.0799 -7.1900 -3.9698 36 1 6.3964 -7.4641 -3.0564 37 1 6.1058 -5.8227 -3.6815 38 1 8.1869 -5.9246 -2.3816 39 1 7.8561 -4.6068 -1.2147 40 1 9.1712 -6.9552 -0.5168 41 1 8.1962 -6.0024 0.6421 42 1 5.5904 -6.5195 0.4786 43 1 5.1978 -7.7403 -0.7710 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001655905626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:07 Heat of formation + Delta-G solvation = -85.755051 kcal Electronic energy + Delta-G solvation = -22150.826488 eV Core-core repulsion = 19003.092712 eV Total energy + Delta-G solvation = -3147.733776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.90961 -37.55075 -36.63317 -33.86880 -32.60317 -32.03454 -29.52038 -29.26186 -27.49378 -26.07035 -23.90169 -23.16493 -21.84173 -21.62316 -20.64614 -18.58657 -16.91071 -16.88721 -16.42768 -15.75547 -15.52624 -15.27243 -14.68171 -14.36938 -14.11581 -13.92760 -13.78920 -13.38271 -13.00055 -12.71318 -12.50975 -12.29822 -11.99729 -11.88023 -11.59869 -11.37141 -11.30157 -11.05519 -10.96278 -10.82237 -10.72788 -10.48376 -10.17242 -9.96601 -9.88865 -9.86189 -9.17640 -8.81869 -8.45672 -8.04836 -6.12940 -4.11855 3.24106 3.31221 3.32461 3.67298 4.17055 4.34607 4.38253 4.56383 4.66480 4.78228 4.95570 4.96046 5.07266 5.19069 5.21999 5.24155 5.28244 5.49147 5.53246 5.60336 5.66707 5.70779 5.75327 5.77956 5.81566 5.90087 5.96134 6.03096 6.04252 6.11556 6.23058 6.23645 6.53444 6.58951 6.61550 6.79851 7.00330 7.28898 7.39145 7.59979 8.00498 8.64969 8.97612 9.46724 11.00044 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.004642 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.170139 B = 6029.790327 C = 6561.912325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.082 0.918 9 C 0.169 3.831 10 O -0.377 6.377 11 C 0.065 3.935 12 C 0.050 3.950 13 N -0.515 5.515 14 C 0.045 3.955 15 C -0.117 4.117 16 C -0.124 4.124 17 C -0.097 4.097 18 C 0.085 3.915 19 C -0.151 4.151 20 C 0.041 3.959 21 O -0.376 6.376 22 C 0.015 3.985 23 H 0.266 0.734 24 H 0.001 0.999 25 H -0.001 1.001 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.432 -12.345 -3.740 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.100 0.900 9 C 0.094 3.906 10 O -0.297 6.297 11 C -0.013 4.013 12 C -0.077 4.077 13 N -0.239 5.239 14 C -0.081 4.081 15 C -0.155 4.155 16 C -0.162 4.162 17 C -0.135 4.135 18 C -0.006 4.006 19 C -0.189 4.189 20 C -0.036 4.036 21 O -0.294 6.294 22 C -0.064 4.064 23 H 0.076 0.924 24 H 0.018 0.982 25 H 0.016 0.984 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.139 0.861 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.277 -12.271 -4.072 20.014 hybrid contribution 0.329 0.855 0.667 1.134 sum 15.607 -11.416 -3.405 19.633 Atomic orbital electron populations 1.69869 1.06070 1.27083 1.50386 1.24758 0.94770 0.98741 0.94632 0.86857 0.80324 0.83824 0.78772 1.19929 1.20852 1.19158 1.20874 0.88273 0.95215 1.51196 0.90037 1.20582 0.96072 0.79697 0.94280 1.87833 1.17680 1.29272 1.94879 1.22336 0.84935 0.94751 0.99318 1.22289 0.99882 0.94891 0.90636 1.61851 1.05375 1.24007 1.32707 1.22495 0.87178 1.02849 0.95620 1.21595 0.99353 0.96622 0.97883 1.21696 0.95057 0.98121 1.01318 1.21467 0.96459 1.00217 0.95339 1.21976 0.93397 0.89477 0.95749 1.23099 0.94667 1.01434 0.99715 1.23474 0.93611 0.88886 0.97586 1.89121 1.16182 1.30436 1.93627 1.24258 0.86803 0.96874 0.98441 0.92384 0.98154 0.98355 0.94152 0.93430 0.93798 0.89982 0.86127 0.95545 0.91079 0.91457 0.92378 0.91892 0.91543 0.90911 0.90156 0.89121 0.89194 0.92459 0.92058 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -15.06 9.99 -34.44 -0.34 -15.40 16 8 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 9 C 0.17 4.19 4.76 36.00 0.17 4.36 16 10 O -0.38 -8.32 7.52 -35.23 -0.26 -8.59 16 11 C 0.06 1.10 6.26 37.16 0.23 1.33 16 12 C 0.05 0.72 4.42 -3.82 -0.02 0.70 16 13 N -0.51 -7.32 4.37 -218.56 -0.96 -8.28 16 14 C 0.05 0.71 4.98 -3.78 -0.02 0.69 16 15 C -0.12 -1.59 6.08 -26.64 -0.16 -1.75 16 16 C -0.12 -1.40 5.78 -26.56 -0.15 -1.55 16 17 C -0.10 -1.07 4.64 -26.91 -0.12 -1.20 16 18 C 0.08 1.01 0.66 -131.24 -0.09 0.92 16 19 C -0.15 -1.54 5.66 -25.36 -0.14 -1.68 16 20 C 0.04 0.41 7.48 38.00 0.28 0.70 16 21 O -0.38 -4.78 11.65 -35.23 -0.41 -5.19 16 22 C 0.01 0.18 5.29 37.67 0.20 0.38 16 23 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.00 0.02 7.20 -51.93 -0.37 -0.35 16 25 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.66 6.84 -51.93 -0.36 0.30 16 29 H 0.08 0.96 5.06 -51.93 -0.26 0.70 16 30 H 0.12 2.37 5.34 -51.93 -0.28 2.10 16 31 H 0.03 0.41 7.07 -51.93 -0.37 0.04 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.64 6.46 -51.93 -0.34 0.30 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.73 7.71 -51.93 -0.40 0.33 16 39 H 0.09 0.92 6.19 -51.93 -0.32 0.60 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.54 7.81 -51.93 -0.41 0.13 16 42 H 0.06 0.81 6.02 -51.93 -0.31 0.50 16 43 H 0.09 1.12 6.11 -51.93 -0.32 0.81 16 LS Contribution 318.09 15.07 4.79 4.79 Total: -1.00 -30.73 318.09 -8.09 -38.81 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.09 Total: -1.07 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -0.26 Total: -10.48 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.18 Total: -34.88 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.68 Total: -13.78 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.73 -8.09 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655905626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.942 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds