Wall clock time and date at job start Mon Mar 30 2020 01:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00194 * 2 1 4 4 H 1.48503 * 109.47072 * 270.00153 * 3 2 1 5 5 H 1.48495 * 109.47508 * 30.00081 * 3 2 1 6 6 H 1.48504 * 109.47230 * 150.00363 * 3 2 1 7 7 C 1.37885 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99724 * 359.97438 * 7 2 1 9 9 C 1.50692 * 119.99928 * 179.97438 * 7 2 1 10 10 O 1.42903 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.42898 * 114.00316 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47393 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46793 * 66.85220 * 12 11 10 14 14 C 1.46938 * 110.99900 * 282.71809 * 13 12 11 15 15 C 1.53050 * 109.47924 * 175.11412 * 14 13 12 16 16 C 1.53127 * 109.32577 * 59.71581 * 15 14 13 17 17 C 1.53207 * 109.09288 * 301.79699 * 16 15 14 18 18 C 1.46183 * 110.99799 * 158.28567 * 13 12 11 19 19 C 1.54026 * 110.29215 * 306.64437 * 18 13 12 20 20 C 1.54596 * 103.89945 * 118.46114 * 19 18 13 21 21 O 1.44470 * 104.81244 * 23.91523 * 20 19 18 22 22 C 1.44545 * 105.36072 * 319.80871 * 21 20 19 23 23 H 0.96998 * 120.00112 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47741 * 59.99756 * 9 7 2 25 25 H 1.08999 * 109.47724 * 299.99562 * 9 7 2 26 26 H 1.08998 * 109.47374 * 59.99802 * 11 10 9 27 27 H 1.09001 * 109.47378 * 299.99901 * 11 10 9 28 28 H 1.09001 * 109.46882 * 306.85743 * 12 11 10 29 29 H 1.08994 * 109.47038 * 186.85057 * 12 11 10 30 30 H 1.08997 * 109.47522 * 55.11069 * 14 13 12 31 31 H 1.08997 * 109.46600 * 295.10637 * 14 13 12 32 32 H 1.09004 * 109.49297 * 299.75881 * 15 14 13 33 33 H 1.09005 * 109.51755 * 179.68940 * 15 14 13 34 34 H 1.08996 * 109.53411 * 61.68927 * 16 15 14 35 35 H 1.09003 * 109.53236 * 181.91528 * 16 15 14 36 36 H 1.09002 * 109.48113 * 176.65994 * 17 16 15 37 37 H 1.09001 * 109.48709 * 296.70997 * 17 16 15 38 38 H 1.09001 * 110.54571 * 237.07095 * 19 18 13 39 39 H 1.09007 * 110.54235 * 359.71401 * 19 18 13 40 40 H 1.08990 * 110.37089 * 142.74856 * 20 19 18 41 41 H 1.09003 * 110.37042 * 264.97068 * 20 19 18 42 42 H 1.08998 * 110.39143 * 281.21645 * 22 21 20 43 43 H 1.09003 * 110.38546 * 158.83274 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 8 3.9878 -2.5414 -0.0010 11 6 5.4123 -2.6543 -0.0021 12 6 5.8068 -4.1326 -0.0012 13 7 5.4060 -4.7471 -1.2739 14 6 3.9622 -5.0193 -1.2955 15 6 3.5624 -5.5442 -2.6765 16 6 4.3367 -6.8316 -2.9730 17 6 5.8392 -6.5396 -2.9049 18 6 6.1805 -5.9585 -1.5377 19 6 7.6886 -5.6580 -1.4495 20 6 8.1801 -6.5601 -0.2943 21 8 7.2146 -7.6327 -0.2269 22 6 5.9296 -7.0050 -0.4364 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6804 0.8888 25 1 3.8745 -0.6802 -0.8911 26 1 5.8158 -2.1704 0.8873 27 1 5.8144 -2.1711 -0.8926 28 1 5.3056 -4.6419 0.8219 29 1 6.8864 -4.2204 0.1205 30 1 3.4158 -4.1002 -1.0841 31 1 3.7222 -5.7668 -0.5394 32 1 3.7984 -4.7954 -3.4326 33 1 2.4923 -5.7517 -2.6915 34 1 4.0790 -7.5903 -2.2341 35 1 4.0799 -7.1900 -3.9698 36 1 6.3964 -7.4641 -3.0564 37 1 6.1058 -5.8227 -3.6815 38 1 8.1869 -5.9246 -2.3816 39 1 7.8561 -4.6068 -1.2147 40 1 9.1712 -6.9552 -0.5168 41 1 8.1962 -6.0024 0.6421 42 1 5.5904 -6.5195 0.4786 43 1 5.1978 -7.7403 -0.7710 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001655905626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:06 Heat of formation + Delta-G solvation = -107.393617 kcal Electronic energy + Delta-G solvation = -22151.764807 eV Core-core repulsion = 19003.092712 eV Total energy + Delta-G solvation = -3148.672095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.89548 -38.88954 -37.94368 -35.19713 -34.58632 -33.05765 -30.84639 -30.39968 -29.24735 -27.09970 -25.07080 -24.13807 -23.83265 -22.80183 -21.66165 -19.61034 -19.03274 -17.98865 -17.38357 -17.27341 -16.80893 -16.57033 -16.13717 -15.91083 -15.26249 -15.02293 -14.90859 -14.69926 -14.45607 -14.14768 -13.82988 -13.47662 -13.31966 -13.08910 -12.87830 -12.74810 -12.52513 -12.38004 -12.31827 -12.14127 -11.87037 -11.82991 -11.52609 -11.41841 -11.17593 -11.04753 -10.86405 -10.80943 -10.22752 -9.19756 -8.36420 -6.43502 1.33425 1.35919 1.46601 2.29607 2.67479 2.96706 3.09228 3.21006 3.48981 3.70242 3.85532 4.00504 4.02084 4.14653 4.19835 4.27366 4.30711 4.36534 4.49611 4.54330 4.60277 4.61153 4.64457 4.65980 4.77839 4.84062 4.89036 4.98852 5.00033 5.03861 5.05666 5.11966 5.17285 5.21950 5.39268 5.46326 5.54638 5.72420 5.95053 6.10756 6.29781 6.60420 6.77608 7.21074 8.80592 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.004642 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.170139 B = 6029.790327 C = 6561.912325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.246 1.246 7 C -0.540 4.540 8 H 0.031 0.969 9 C 0.180 3.820 10 O -0.396 6.396 11 C 0.056 3.944 12 C 0.056 3.944 13 N -0.519 5.519 14 C 0.050 3.950 15 C -0.115 4.115 16 C -0.118 4.118 17 C -0.094 4.094 18 C 0.081 3.919 19 C -0.147 4.147 20 C 0.038 3.962 21 O -0.391 6.391 22 C 0.018 3.982 23 H 0.272 0.728 24 H 0.009 0.991 25 H 0.007 0.993 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.032 0.968 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.022 0.978 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.516 -12.011 -4.288 22.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.577 4.577 8 H 0.049 0.951 9 C 0.104 3.896 10 O -0.315 6.315 11 C -0.021 4.021 12 C -0.071 4.071 13 N -0.243 5.243 14 C -0.077 4.077 15 C -0.152 4.152 16 C -0.156 4.156 17 C -0.132 4.132 18 C -0.009 4.009 19 C -0.184 4.184 20 C -0.039 4.039 21 O -0.309 6.309 22 C -0.061 4.061 23 H 0.081 0.919 24 H 0.027 0.973 25 H 0.025 0.975 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.132 0.868 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.384 -11.963 -4.620 22.415 hybrid contribution -0.661 0.635 0.850 1.250 sum 17.723 -11.329 -3.770 21.370 Atomic orbital electron populations 1.70028 1.08232 1.28667 1.51320 1.25797 0.95726 1.03281 0.93587 0.85640 0.79446 0.77769 0.79676 1.18558 1.19986 1.16973 1.21138 0.90916 0.93727 1.51948 0.95069 1.20270 0.93215 0.81370 0.94722 1.87860 1.21047 1.27594 1.95040 1.22666 0.82112 0.97013 1.00301 1.22290 1.01514 0.92934 0.90381 1.61834 1.04475 1.25466 1.32555 1.22271 0.88175 1.00522 0.96755 1.21556 0.99611 0.97795 0.96282 1.21655 0.95057 0.96511 1.02351 1.21477 0.96150 1.00868 0.94681 1.22106 0.94377 0.88326 0.96081 1.23103 0.92978 1.01665 1.00676 1.23674 0.93983 0.88434 0.97770 1.89111 1.16496 1.31609 1.93703 1.24167 0.87057 0.96888 0.97953 0.91897 0.97342 0.97514 0.92526 0.92871 0.94957 0.86768 0.90535 0.95992 0.92012 0.91924 0.92102 0.90178 0.89959 0.90809 0.88595 0.88827 0.86953 0.91953 0.93401 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.33 13.96 21.45 0.30 -59.04 16 2 C 0.01 0.82 5.47 84.66 0.46 1.29 16 3 Si 0.95 43.43 27.47 68.60 1.88 45.32 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.25 -10.34 6.54 99.48 0.65 -9.69 16 7 C -0.54 -32.61 9.99 25.60 0.26 -32.35 16 8 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 9 C 0.18 8.95 4.76 71.23 0.34 9.29 16 10 O -0.40 -17.82 7.52 -148.98 -1.12 -18.94 16 11 C 0.06 1.86 6.26 71.98 0.45 2.31 16 12 C 0.06 1.54 4.42 86.30 0.38 1.92 16 13 N -0.52 -14.39 4.37 -845.40 -3.70 -18.09 16 14 C 0.05 1.64 4.98 86.31 0.43 2.07 16 15 C -0.11 -3.18 6.08 30.65 0.19 -3.00 16 16 C -0.12 -2.51 5.78 30.71 0.18 -2.33 16 17 C -0.09 -1.87 4.64 30.48 0.14 -1.73 16 18 C 0.08 1.79 0.66 4.15 0.00 1.79 16 19 C -0.15 -2.51 5.66 31.48 0.18 -2.33 16 20 C 0.04 0.63 7.48 72.53 0.54 1.18 16 21 O -0.39 -9.08 11.65 -148.98 -1.74 -10.82 16 22 C 0.02 0.42 5.29 72.31 0.38 0.80 16 23 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 24 H 0.01 0.42 7.20 -2.39 -0.02 0.41 16 25 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.03 0.97 6.84 -2.39 -0.02 0.95 16 29 H 0.11 2.38 5.06 -2.39 -0.01 2.37 16 30 H 0.08 3.22 5.34 -2.39 -0.01 3.21 16 31 H 0.02 0.71 7.07 -2.39 -0.02 0.70 16 32 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.06 1.27 6.46 -2.39 -0.02 1.25 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.10 1.38 7.71 -2.39 -0.02 1.36 16 39 H 0.09 1.57 6.19 -2.38 -0.01 1.55 16 40 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 0.98 7.81 -2.39 -0.02 0.97 16 42 H 0.05 1.24 6.02 -2.39 -0.01 1.23 16 43 H 0.09 2.15 6.11 -2.39 -0.01 2.14 16 Total: -1.00 -68.81 318.09 0.49 -68.32 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.93 Total: 14.36 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 3.93 Total: -21.10 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -3.40 Total: -77.13 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -2.86 Total: -29.76 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.32 kcal Total: -68.81 0.49 -68.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655905626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.073 kcal (2) G-P(sol) polarization free energy of solvation -68.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds