Wall clock time and date at job start Mon Mar 30 2020 00:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00079 * 2 1 4 4 C 1.53002 * 109.47029 * 125.00089 * 3 2 1 5 5 C 1.53000 * 109.47316 * 174.92434 * 4 3 2 6 6 H 1.08996 * 110.00492 * 303.58347 * 5 4 3 7 7 C 1.54314 * 109.89097 * 64.70068 * 5 4 3 8 8 C 1.55142 * 103.01902 * 141.69251 * 7 5 4 9 9 C 1.54912 * 101.64993 * 324.34938 * 8 7 5 10 10 N 1.47445 * 109.88834 * 182.47499 * 5 4 3 11 11 C 1.46902 * 111.00238 * 3.84573 * 10 5 4 12 12 C 1.52998 * 109.47032 * 175.12217 * 11 10 5 13 13 C 1.53001 * 109.46964 * 180.02562 * 12 11 10 14 14 S 1.81001 * 109.47020 * 180.02562 * 13 12 11 15 15 C 1.76201 * 99.99677 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00490 * 0.02562 * 15 14 13 17 17 C 1.38806 * 119.99762 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99779 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99862 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47252 * 90.00187 * 19 17 15 21 21 H 1.48507 * 109.47188 * 210.00486 * 19 17 15 22 22 H 1.48501 * 109.47360 * 330.00292 * 19 17 15 23 23 H 1.08004 * 119.99665 * 179.97438 * 1 2 3 24 24 H 1.08002 * 119.99927 * 359.97438 * 1 2 3 25 25 H 1.08007 * 120.00266 * 180.02562 * 2 1 3 26 26 H 1.08993 * 109.46862 * 5.00261 * 3 2 1 27 27 H 1.08999 * 109.47417 * 245.00068 * 3 2 1 28 28 H 1.09000 * 109.47308 * 54.91683 * 4 3 2 29 29 H 1.09004 * 109.47056 * 294.92454 * 4 3 2 30 30 H 1.08998 * 110.70886 * 260.07338 * 7 5 4 31 31 H 1.09001 * 110.70513 * 23.13836 * 7 5 4 32 32 H 1.08997 * 110.99086 * 82.43925 * 8 7 5 33 33 H 1.08997 * 110.99097 * 206.22122 * 8 7 5 34 34 H 1.09007 * 110.37124 * 278.23458 * 9 8 7 35 35 H 1.08998 * 110.36844 * 155.90363 * 9 8 7 36 36 H 1.08993 * 109.46935 * 295.12587 * 11 10 5 37 37 H 1.09007 * 109.46702 * 55.12236 * 11 10 5 38 38 H 1.09001 * 109.47017 * 299.99668 * 12 11 10 39 39 H 1.08995 * 109.47186 * 60.00061 * 12 11 10 40 40 H 1.09004 * 109.47154 * 300.00117 * 13 12 11 41 41 H 1.08995 * 109.47401 * 59.99848 * 13 12 11 42 42 H 0.97004 * 120.00071 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.8889 2.6006 1.1100 6 1 4.4070 2.6475 0.1523 7 6 2.9951 3.8463 1.2851 8 6 3.8764 4.7909 2.1441 9 6 4.6060 3.7839 3.0679 10 7 4.8691 2.6079 2.2114 11 6 4.7967 1.3637 2.9890 12 6 5.9058 1.3557 4.0429 13 6 5.8308 0.0595 4.8523 14 16 7.1423 0.0503 6.0997 15 6 6.8287 -1.5071 6.8619 16 1 6.0154 -2.1255 6.5121 17 6 7.6278 -1.9395 7.9112 18 7 8.6194 -1.1860 8.3372 19 14 7.2958 -3.5909 8.7188 20 1 8.0705 -4.6480 8.0207 21 1 7.7067 -3.5361 10.1448 22 1 5.8461 -3.9014 8.6331 23 1 -0.5400 -0.9354 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 3.6817 0.4565 1.1412 29 1 2.4721 1.3264 2.1151 30 1 2.7723 4.2996 0.3192 31 1 2.0751 3.5898 1.8104 32 1 4.5867 5.3353 1.5218 33 1 3.2612 5.4788 2.7241 34 1 3.9675 3.5072 3.9069 35 1 5.5432 4.2090 3.4273 36 1 3.8267 1.2991 3.4817 37 1 4.9230 0.5107 2.3221 38 1 6.8759 1.4202 3.5500 39 1 5.7796 2.2086 4.7097 40 1 4.8607 -0.0056 5.3452 41 1 5.9573 -0.7933 4.1853 42 1 9.1776 -1.4881 9.0708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656377137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:04 Heat of formation + Delta-G solvation = -1.374276 kcal Electronic energy + Delta-G solvation = -18172.354213 eV Core-core repulsion = 15471.032333 eV Total energy + Delta-G solvation = -2701.321880 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.78872 -35.76444 -34.16733 -32.40566 -31.81023 -30.48199 -27.42281 -25.77362 -24.96663 -23.56006 -21.95883 -20.80668 -19.93715 -19.11082 -17.44339 -16.40289 -15.81720 -15.32513 -15.15482 -14.78284 -14.63741 -14.11781 -13.68198 -13.39557 -13.22276 -13.13030 -12.69995 -12.49879 -11.88944 -11.62872 -11.47173 -11.32247 -11.24086 -11.21110 -11.09743 -11.04503 -10.79426 -10.76378 -10.62593 -10.56382 -10.17301 -9.56511 -9.47914 -9.03304 -8.26169 -8.21248 -6.49220 -6.20141 -3.89915 2.04842 3.23286 3.23906 3.30622 3.58482 3.99129 4.25367 4.43379 4.54912 4.66051 4.74493 4.92412 5.04368 5.14703 5.15736 5.23157 5.29295 5.37686 5.40324 5.43967 5.52267 5.59287 5.63443 5.68743 5.69676 5.78332 5.82717 5.92353 5.95815 5.98859 6.07308 6.18079 6.23073 6.39624 6.39784 6.53718 6.65521 6.81030 7.06388 7.16655 7.63042 8.39281 9.26061 10.88087 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020397 B = 0.003575 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.433715 B = 7830.597349 C = 8989.243478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.092 4.092 4 C -0.134 4.134 5 C 0.073 3.927 6 H 0.084 0.916 7 C -0.137 4.137 8 C -0.131 4.131 9 C 0.041 3.959 10 N -0.524 5.524 11 C 0.053 3.947 12 C -0.095 4.095 13 C -0.111 4.111 14 S -0.133 6.133 15 C -0.516 4.516 16 H 0.072 0.928 17 C 0.071 3.929 18 N -0.870 5.870 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 8.477 -16.189 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.168 4.168 3 C -0.130 4.130 4 C -0.172 4.172 5 C -0.035 4.035 6 H 0.102 0.898 7 C -0.176 4.176 8 C -0.169 4.169 9 C -0.087 4.087 10 N -0.248 5.248 11 C -0.077 4.077 12 C -0.133 4.133 13 C -0.261 4.261 14 S 0.095 5.905 15 C -0.664 4.664 16 H 0.090 0.910 17 C -0.138 4.138 18 N -0.506 5.506 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.091 9.294 -16.010 22.111 hybrid contribution -1.969 -2.150 0.671 2.992 sum -14.061 7.145 -15.339 22.000 Atomic orbital electron populations 1.23832 0.96003 1.01693 1.02149 1.23032 0.96065 0.98735 0.99015 1.20758 0.98117 0.95200 0.98893 1.22197 0.97803 0.98832 0.98397 1.22480 0.91026 0.93752 0.96246 0.89814 1.22881 0.98339 0.95952 1.00409 1.22705 0.98560 0.97457 0.98150 1.23083 0.99970 0.90670 0.94983 1.63744 1.47961 1.02758 1.10326 1.22445 0.97814 0.92067 0.95335 1.21283 0.98916 0.97127 0.96023 1.23227 1.02898 0.98993 1.00957 1.84629 1.39270 1.28702 1.37868 1.22698 1.19213 1.03808 1.20699 0.91023 1.25012 0.94583 0.98136 0.96070 1.70024 1.17221 1.36854 1.26459 0.86175 0.78691 0.82339 0.78381 1.20266 1.20765 1.19717 0.88640 0.88769 0.87367 0.91583 0.90898 0.90618 0.91602 0.91083 0.91498 0.90768 0.91075 0.93452 0.89995 0.94705 0.90509 0.90886 0.91850 0.92478 0.92206 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.63 14.32 29.02 0.42 -1.22 16 2 C -0.15 -1.31 9.52 -36.02 -0.34 -1.65 16 3 C -0.09 -0.76 5.40 -27.88 -0.15 -0.91 16 4 C -0.13 -1.31 3.34 -26.73 -0.09 -1.40 16 5 C 0.07 0.75 3.48 -66.73 -0.23 0.52 16 6 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 7 C -0.14 -1.21 5.58 -24.91 -0.14 -1.34 16 8 C -0.13 -1.21 7.08 -24.59 -0.17 -1.38 16 9 C 0.04 0.48 5.53 -2.30 -0.01 0.46 16 10 N -0.52 -6.63 5.20 -223.35 -1.16 -7.79 16 11 C 0.05 0.73 3.67 -3.82 -0.01 0.72 16 12 C -0.09 -1.62 5.19 -26.73 -0.14 -1.76 16 13 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 14 S -0.13 -3.56 21.44 -107.50 -2.30 -5.86 16 15 C -0.52 -15.05 9.50 30.94 0.29 -14.75 16 16 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 17 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 18 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 19 Si 0.92 21.78 29.55 -169.99 -5.02 16.75 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 23 H 0.10 0.70 8.06 -52.48 -0.42 0.28 16 24 H 0.09 0.70 7.84 -52.49 -0.41 0.29 16 25 H 0.11 0.93 8.06 -52.48 -0.42 0.50 16 26 H 0.07 0.51 7.18 -51.93 -0.37 0.14 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.80 6.29 -51.93 -0.33 0.47 16 29 H 0.07 0.71 6.95 -51.93 -0.36 0.35 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.59 7.77 -51.93 -0.40 0.19 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.58 7.71 -51.92 -0.40 0.18 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.03 0.49 6.75 -51.93 -0.35 0.14 16 37 H 0.08 1.05 6.33 -51.92 -0.33 0.72 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.09 7.32 -51.93 -0.38 0.71 16 40 H 0.06 1.18 8.14 -51.91 -0.42 0.75 16 41 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -30.85 344.14 -10.57 -41.42 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.53 Total: -1.24 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -0.47 Total: -22.88 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: -0.43 Total: -33.38 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.30 Total: -5.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.85 -10.57 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656377137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.044 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds