Wall clock time and date at job start Mon Mar 30 2020 00:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00079 * 2 1 4 4 C 1.53002 * 109.47029 * 125.00089 * 3 2 1 5 5 C 1.53000 * 109.47316 * 174.92434 * 4 3 2 6 6 H 1.08996 * 110.00492 * 303.58347 * 5 4 3 7 7 C 1.54314 * 109.89097 * 64.70068 * 5 4 3 8 8 C 1.55142 * 103.01902 * 141.69251 * 7 5 4 9 9 C 1.54912 * 101.64993 * 324.34938 * 8 7 5 10 10 N 1.47445 * 109.88834 * 182.47499 * 5 4 3 11 11 C 1.46902 * 111.00238 * 3.84573 * 10 5 4 12 12 C 1.52998 * 109.47032 * 175.12217 * 11 10 5 13 13 C 1.53001 * 109.46964 * 180.02562 * 12 11 10 14 14 S 1.81001 * 109.47020 * 180.02562 * 13 12 11 15 15 C 1.76201 * 99.99677 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00490 * 0.02562 * 15 14 13 17 17 C 1.38806 * 119.99762 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99779 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99862 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47252 * 90.00187 * 19 17 15 21 21 H 1.48507 * 109.47188 * 210.00486 * 19 17 15 22 22 H 1.48501 * 109.47360 * 330.00292 * 19 17 15 23 23 H 1.08004 * 119.99665 * 179.97438 * 1 2 3 24 24 H 1.08002 * 119.99927 * 359.97438 * 1 2 3 25 25 H 1.08007 * 120.00266 * 180.02562 * 2 1 3 26 26 H 1.08993 * 109.46862 * 5.00261 * 3 2 1 27 27 H 1.08999 * 109.47417 * 245.00068 * 3 2 1 28 28 H 1.09000 * 109.47308 * 54.91683 * 4 3 2 29 29 H 1.09004 * 109.47056 * 294.92454 * 4 3 2 30 30 H 1.08998 * 110.70886 * 260.07338 * 7 5 4 31 31 H 1.09001 * 110.70513 * 23.13836 * 7 5 4 32 32 H 1.08997 * 110.99086 * 82.43925 * 8 7 5 33 33 H 1.08997 * 110.99097 * 206.22122 * 8 7 5 34 34 H 1.09007 * 110.37124 * 278.23458 * 9 8 7 35 35 H 1.08998 * 110.36844 * 155.90363 * 9 8 7 36 36 H 1.08993 * 109.46935 * 295.12587 * 11 10 5 37 37 H 1.09007 * 109.46702 * 55.12236 * 11 10 5 38 38 H 1.09001 * 109.47017 * 299.99668 * 12 11 10 39 39 H 1.08995 * 109.47186 * 60.00061 * 12 11 10 40 40 H 1.09004 * 109.47154 * 300.00117 * 13 12 11 41 41 H 1.08995 * 109.47401 * 59.99848 * 13 12 11 42 42 H 0.97004 * 120.00071 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.8889 2.6006 1.1100 6 1 4.4070 2.6475 0.1523 7 6 2.9951 3.8463 1.2851 8 6 3.8764 4.7909 2.1441 9 6 4.6060 3.7839 3.0679 10 7 4.8691 2.6079 2.2114 11 6 4.7967 1.3637 2.9890 12 6 5.9058 1.3557 4.0429 13 6 5.8308 0.0595 4.8523 14 16 7.1423 0.0503 6.0997 15 6 6.8287 -1.5071 6.8619 16 1 6.0154 -2.1255 6.5121 17 6 7.6278 -1.9395 7.9112 18 7 8.6194 -1.1860 8.3372 19 14 7.2958 -3.5909 8.7188 20 1 8.0705 -4.6480 8.0207 21 1 7.7067 -3.5361 10.1448 22 1 5.8461 -3.9014 8.6331 23 1 -0.5400 -0.9354 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 3.6817 0.4565 1.1412 29 1 2.4721 1.3264 2.1151 30 1 2.7723 4.2996 0.3192 31 1 2.0751 3.5898 1.8104 32 1 4.5867 5.3353 1.5218 33 1 3.2612 5.4788 2.7241 34 1 3.9675 3.5072 3.9069 35 1 5.5432 4.2090 3.4273 36 1 3.8267 1.2991 3.4817 37 1 4.9230 0.5107 2.3221 38 1 6.8759 1.4202 3.5500 39 1 5.7796 2.2086 4.7097 40 1 4.8607 -0.0056 5.3452 41 1 5.9573 -0.7933 4.1853 42 1 9.1776 -1.4881 9.0708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656377137.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:03 Heat of formation + Delta-G solvation = -18.614107 kcal Electronic energy + Delta-G solvation = -18173.101788 eV Core-core repulsion = 15471.032333 eV Total energy + Delta-G solvation = -2702.069455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68456 -36.50229 -35.38596 -34.60837 -32.57241 -31.61373 -28.18583 -27.85952 -26.37297 -24.31574 -23.14112 -21.79019 -20.58508 -20.07277 -19.55526 -17.27695 -16.90533 -16.84040 -16.40140 -16.03984 -15.89306 -15.54303 -14.85334 -14.61402 -14.14389 -14.04677 -13.91055 -13.62888 -13.41955 -12.98661 -12.94888 -12.69966 -12.56135 -12.26948 -12.20386 -12.09687 -11.99349 -11.87406 -11.75305 -11.51159 -11.33310 -11.23650 -11.14781 -10.33175 -10.20952 -9.19054 -8.68031 -8.38072 -6.14786 1.30640 1.38961 1.40924 1.48124 1.73484 2.27602 2.96021 3.00099 3.32057 3.64229 3.77645 3.87004 4.00115 4.06970 4.18470 4.24361 4.35539 4.38200 4.44297 4.48880 4.51203 4.59178 4.67485 4.70044 4.77344 4.90089 4.91619 4.99023 5.05173 5.05819 5.13231 5.17127 5.27304 5.30122 5.32003 5.38578 5.46255 5.76874 5.89691 6.10689 6.15924 6.17263 7.03828 8.71515 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020397 B = 0.003575 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.433715 B = 7830.597349 C = 8989.243478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C -0.085 4.085 4 C -0.128 4.128 5 C 0.072 3.928 6 H 0.088 0.912 7 C -0.131 4.131 8 C -0.124 4.124 9 C 0.034 3.966 10 N -0.537 5.537 11 C 0.066 3.934 12 C -0.083 4.083 13 C -0.086 4.086 14 S -0.198 6.198 15 C -0.539 4.539 16 H 0.072 0.928 17 C 0.015 3.985 18 N -0.908 5.908 19 Si 0.995 3.005 20 H -0.267 1.267 21 H -0.273 1.273 22 H -0.263 1.263 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.105 0.895 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.199 8.271 -17.215 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.184 4.184 3 C -0.123 4.123 4 C -0.166 4.166 5 C -0.036 4.036 6 H 0.106 0.894 7 C -0.169 4.169 8 C -0.162 4.162 9 C -0.093 4.093 10 N -0.261 5.261 11 C -0.063 4.063 12 C -0.122 4.122 13 C -0.235 4.235 14 S 0.030 5.970 15 C -0.687 4.687 16 H 0.090 0.910 17 C -0.190 4.190 18 N -0.544 5.544 19 Si 0.817 3.183 20 H -0.192 1.192 21 H -0.198 1.198 22 H -0.187 1.187 23 H 0.119 0.881 24 H 0.121 0.879 25 H 0.123 0.877 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.735 9.101 -17.051 23.711 hybrid contribution -1.477 -2.028 0.929 2.676 sum -15.212 7.073 -16.123 23.267 Atomic orbital electron populations 1.23999 0.95938 1.02436 1.01182 1.23119 0.96439 0.98908 0.99922 1.20700 0.97879 0.95294 0.98391 1.22100 0.97734 0.98118 0.98661 1.22556 0.90949 0.94813 0.95276 0.89398 1.22861 0.97794 0.94936 1.01330 1.22690 0.98627 0.97104 0.97822 1.23122 0.99717 0.91148 0.95333 1.63692 1.49465 1.02191 1.10710 1.22221 0.96267 0.93274 0.94571 1.21164 0.99835 0.94885 0.96266 1.23141 1.00157 1.01069 0.99162 1.84652 1.42951 1.28813 1.40553 1.23043 1.19642 1.04494 1.21537 0.90969 1.26088 0.94026 1.02420 0.96457 1.70157 1.18183 1.39004 1.27057 0.85002 0.79015 0.76889 0.77412 1.19199 1.19814 1.18718 0.88117 0.87908 0.87713 0.90676 0.90164 0.91679 0.92675 0.89115 0.91351 0.90307 0.89754 0.94265 0.91023 0.94503 0.90087 0.91832 0.92284 0.92246 0.91908 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.90 14.32 67.78 0.97 -1.93 16 2 C -0.17 -2.64 9.52 25.65 0.24 -2.40 16 3 C -0.08 -1.23 5.40 29.85 0.16 -1.07 16 4 C -0.13 -2.31 3.34 30.59 0.10 -2.20 16 5 C 0.07 1.34 3.48 45.26 0.16 1.50 16 6 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 7 C -0.13 -1.95 5.58 31.77 0.18 -1.78 16 8 C -0.12 -2.05 7.08 31.98 0.23 -1.82 16 9 C 0.03 0.78 5.53 86.78 0.48 1.26 16 10 N -0.54 -13.03 5.20 -860.55 -4.48 -17.50 16 11 C 0.07 1.81 3.67 86.30 0.32 2.12 16 12 C -0.08 -2.83 5.19 30.59 0.16 -2.67 16 13 C -0.09 -3.59 5.67 71.98 0.41 -3.18 16 14 S -0.20 -10.88 21.44 -56.49 -1.21 -12.09 16 15 C -0.54 -31.85 9.50 67.96 0.65 -31.20 16 16 H 0.07 4.10 7.80 -2.91 -0.02 4.08 16 17 C 0.01 0.87 5.49 84.86 0.47 1.33 16 18 N -0.91 -55.65 13.22 21.65 0.29 -55.36 16 19 Si 1.00 44.48 29.55 68.60 2.03 46.50 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 23 H 0.10 1.33 8.06 -2.91 -0.02 1.30 16 24 H 0.10 1.30 7.84 -2.91 -0.02 1.28 16 25 H 0.10 1.70 8.06 -2.91 -0.02 1.68 16 26 H 0.07 0.96 7.18 -2.39 -0.02 0.94 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.31 6.29 -2.39 -0.02 1.29 16 29 H 0.05 1.11 6.95 -2.38 -0.02 1.10 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.03 7.77 -2.39 -0.02 1.01 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.04 0.94 7.71 -2.38 -0.02 0.92 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.00 6.75 -2.39 -0.02 0.98 16 37 H 0.08 2.15 6.33 -2.38 -0.02 2.13 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.06 2.07 7.32 -2.39 -0.02 2.05 16 40 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.06 2.57 8.14 -2.40 -0.02 2.55 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -66.47 344.14 2.09 -64.38 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.95 Total: 16.12 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 4.51 Total: -42.04 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -4.19 Total: -72.86 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: -10.88 SS G_CDS: -1.21 Total: -12.09 kcal Total: -66.47 2.09 -64.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656377137.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.763 kcal (2) G-P(sol) polarization free energy of solvation -66.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds