Wall clock time and date at job start Mon Mar 30 2020 01:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99953 * 2 1 4 4 H 1.48497 * 109.47150 * 239.99843 * 3 2 1 5 5 H 1.48501 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46846 * 119.99523 * 3 2 1 7 7 C 1.37872 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00237 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00010 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47454 * 300.00155 * 9 7 2 11 11 O 1.42907 * 109.47131 * 59.99426 * 9 7 2 12 12 C 1.52999 * 109.47579 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.47232 * 179.97438 * 12 9 7 14 14 C 1.46846 * 110.99937 * 294.50708 * 13 12 9 15 15 C 1.53033 * 109.51491 * 174.16872 * 14 13 12 16 16 C 1.53094 * 109.29172 * 59.18489 * 15 14 13 17 17 C 1.53117 * 109.15470 * 302.33993 * 16 15 14 18 18 C 1.46845 * 110.99528 * 170.30009 * 13 12 9 19 19 H 1.09002 * 109.46565 * 65.83646 * 18 13 12 20 20 C 1.53002 * 109.46404 * 305.84887 * 18 13 12 21 21 H 1.09002 * 109.82283 * 65.17232 * 20 18 13 22 22 C 1.54379 * 109.83178 * 304.19068 * 20 18 13 23 23 C 1.55303 * 102.25101 * 219.12832 * 22 20 18 24 24 C 1.54947 * 100.94403 * 34.13470 * 23 22 20 25 25 O 1.43239 * 109.83023 * 186.05246 * 20 18 13 26 26 H 0.96999 * 120.00282 * 0.02562 * 1 2 3 27 27 H 0.96704 * 113.99529 * 60.00408 * 11 9 7 28 28 H 1.09000 * 109.46727 * 59.92104 * 12 9 7 29 29 H 1.09003 * 109.46595 * 299.92753 * 12 9 7 30 30 H 1.09008 * 109.46037 * 294.18124 * 14 13 12 31 31 H 1.09004 * 109.46232 * 54.15843 * 14 13 12 32 32 H 1.08998 * 109.50570 * 179.11495 * 15 14 13 33 33 H 1.09000 * 109.50488 * 299.23082 * 15 14 13 34 34 H 1.08997 * 109.52904 * 182.43406 * 16 15 14 35 35 H 1.09006 * 109.58190 * 62.27357 * 16 15 14 36 36 H 1.08996 * 109.50720 * 297.71326 * 17 16 15 37 37 H 1.09002 * 109.53592 * 177.61369 * 17 16 15 38 38 H 1.09002 * 110.84911 * 337.31836 * 22 20 18 39 39 H 1.08997 * 110.84550 * 100.93693 * 22 20 18 40 40 H 1.09007 * 111.12539 * 276.21498 * 23 22 20 41 41 H 1.09006 * 111.12384 * 152.05492 * 23 22 20 42 42 H 1.09004 * 110.31097 * 204.64104 * 24 23 22 43 43 H 1.08993 * 110.31046 * 82.46988 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5750 -1.1665 12 6 2.2454 -3.6620 0.0005 13 7 1.5108 -4.9342 0.0012 14 6 0.7557 -5.1052 1.2489 15 6 -0.1080 -6.3651 1.1551 16 6 0.7927 -7.5788 0.9116 17 6 1.6037 -7.3541 -0.3676 18 6 2.4180 -6.0656 -0.2298 19 1 3.1046 -6.1584 0.6117 20 6 3.2147 -5.8264 -1.5139 21 1 3.8669 -4.9620 -1.3887 22 6 2.2477 -5.5887 -2.6937 23 6 2.9490 -6.3480 -3.8527 24 6 3.5858 -7.5337 -3.0849 25 8 3.9979 -6.9852 -1.8229 26 1 -0.4850 0.8400 -0.0004 27 1 0.9224 -2.5299 -1.9976 28 1 2.8729 -3.6035 0.8898 29 1 2.8711 -3.6050 -0.8902 30 1 1.4503 -5.2023 2.0834 31 1 0.1158 -4.2373 1.4080 32 1 -0.6565 -6.5005 2.0872 33 1 -0.8122 -6.2630 0.3294 34 1 0.1782 -8.4723 0.8011 35 1 1.4711 -7.7055 1.7554 36 1 0.9266 -7.2675 -1.2173 37 1 2.2782 -8.1959 -0.5241 38 1 1.2681 -6.0187 -2.4850 39 1 2.1657 -4.5257 -2.9199 40 1 3.7131 -5.7286 -4.3226 41 1 2.2244 -6.6995 -4.5873 42 1 4.4479 -7.9182 -3.6300 43 1 2.8507 -8.3239 -2.9321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656507041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:19 Heat of formation + Delta-G solvation = -100.763553 kcal Electronic energy + Delta-G solvation = -22527.805076 eV Core-core repulsion = 19379.420482 eV Total energy + Delta-G solvation = -3148.384594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08904 -37.94798 -35.58605 -32.94683 -32.05061 -31.95416 -31.36409 -28.21914 -27.73359 -25.10998 -23.46805 -22.95434 -21.71050 -20.59139 -20.14534 -18.91065 -17.03506 -16.58025 -15.91118 -15.17555 -14.82892 -14.67435 -14.46818 -14.24631 -13.96592 -13.57362 -13.41579 -13.04055 -12.80637 -12.64244 -12.38058 -11.84935 -11.57124 -11.56174 -11.17218 -11.10604 -10.93307 -10.88115 -10.83576 -10.59148 -10.53087 -10.33540 -10.15465 -10.11399 -9.90215 -9.21558 -8.88513 -8.53721 -8.07265 -7.58366 -5.99140 -4.17408 3.29126 3.34624 3.36278 3.82828 4.36928 4.59726 4.68859 4.87856 5.00102 5.10978 5.13026 5.20135 5.28672 5.33488 5.43880 5.53217 5.69789 5.73527 5.81813 5.86832 5.91390 5.95076 6.03233 6.05099 6.12525 6.17472 6.24796 6.28306 6.35252 6.36699 6.51437 6.55380 6.58326 6.70577 6.84191 7.15787 7.60768 7.70669 7.80723 7.91206 8.22451 8.86479 9.47497 9.63902 11.04797 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020686 B = 0.005914 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.256628 B = 4733.041735 C = 5548.776231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.887 3.113 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.575 4.575 8 H 0.053 0.947 9 C 0.239 3.761 10 H 0.054 0.946 11 O -0.552 6.552 12 C 0.025 3.975 13 N -0.514 5.514 14 C 0.057 3.943 15 C -0.115 4.115 16 C -0.119 4.119 17 C -0.106 4.106 18 C 0.075 3.925 19 H 0.035 0.965 20 C 0.085 3.915 21 H 0.080 0.920 22 C -0.133 4.133 23 C -0.161 4.161 24 C 0.052 3.948 25 O -0.381 6.381 26 H 0.260 0.740 27 H 0.340 0.660 28 H 0.024 0.976 29 H 0.066 0.934 30 H 0.022 0.978 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.478 -14.630 -3.578 15.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.613 4.613 8 H 0.071 0.929 9 C 0.181 3.819 10 H 0.072 0.928 11 O -0.353 6.353 12 C -0.103 4.103 13 N -0.240 5.240 14 C -0.070 4.070 15 C -0.153 4.153 16 C -0.157 4.157 17 C -0.144 4.144 18 C -0.034 4.034 19 H 0.053 0.947 20 C 0.028 3.972 21 H 0.098 0.902 22 C -0.170 4.170 23 C -0.199 4.199 24 C -0.025 4.025 25 O -0.300 6.300 26 H 0.070 0.930 27 H 0.182 0.818 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.655 -14.646 -3.362 15.259 hybrid contribution 1.512 1.134 0.277 1.910 sum 4.167 -13.512 -3.085 14.472 Atomic orbital electron populations 1.70067 1.05869 1.26463 1.46999 1.25002 0.94658 0.98974 0.93875 0.86766 0.79747 0.83350 0.78663 1.20171 1.21202 1.20240 1.21628 0.93081 0.91708 1.54922 0.92891 1.19296 0.87748 0.88400 0.86454 0.92838 1.86576 1.37594 1.96298 1.14825 1.23176 0.97483 0.90035 0.99575 1.61940 1.26014 1.01131 1.34919 1.22077 0.96575 0.98646 0.89743 1.21571 0.98030 0.94100 1.01572 1.21568 0.98361 0.97932 0.97802 1.21577 0.98365 0.96337 0.98132 1.21827 0.93156 0.92243 0.96138 0.94707 1.22788 0.92029 0.87678 0.94753 0.90210 1.23031 0.99500 1.02238 0.92257 1.23318 1.00427 0.97458 0.98690 1.23325 0.98856 0.95837 0.84470 1.88377 1.59287 1.44323 1.38017 0.92971 0.81758 0.95757 0.91531 0.95984 0.89537 0.92203 0.91068 0.92409 0.92755 0.91273 0.91828 0.89347 0.89638 0.90783 0.90289 0.90382 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.20 12.84 55.43 0.71 -24.49 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.57 -15.60 8.76 -34.44 -0.30 -15.90 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.24 5.92 2.69 -27.88 -0.08 5.84 16 10 H 0.05 1.47 6.42 -51.93 -0.33 1.14 16 11 O -0.55 -13.91 12.60 -35.23 -0.44 -14.35 16 12 C 0.02 0.50 4.22 -3.82 -0.02 0.48 16 13 N -0.51 -9.09 3.85 -226.68 -0.87 -9.97 16 14 C 0.06 0.99 5.29 -3.84 -0.02 0.97 16 15 C -0.11 -1.64 6.09 -26.67 -0.16 -1.80 16 16 C -0.12 -1.53 6.00 -26.62 -0.16 -1.69 16 17 C -0.11 -1.45 4.91 -26.65 -0.13 -1.58 16 18 C 0.08 1.18 1.89 -67.72 -0.13 1.05 16 19 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 20 C 0.09 1.27 2.76 -26.01 -0.07 1.20 16 21 H 0.08 1.30 6.45 -51.93 -0.34 0.96 16 22 C -0.13 -1.82 5.65 -24.79 -0.14 -1.96 16 23 C -0.16 -1.78 7.16 -24.48 -0.18 -1.96 16 24 C 0.05 0.58 7.71 38.18 0.29 0.88 16 25 O -0.38 -5.55 10.14 -35.23 -0.36 -5.91 16 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.34 7.72 9.04 45.56 0.41 8.13 16 28 H 0.02 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.07 1.31 5.49 -51.93 -0.29 1.02 16 30 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.09 1.70 6.20 -51.93 -0.32 1.37 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.95 6.31 -51.93 -0.33 0.63 16 37 H 0.06 0.83 7.58 -51.93 -0.39 0.44 16 38 H 0.09 1.27 6.04 -51.93 -0.31 0.95 16 39 H 0.08 1.26 7.97 -51.93 -0.41 0.84 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 325.92 15.07 4.91 4.91 Total: -1.00 -29.50 325.92 -8.76 -38.25 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.50 Total: 7.78 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.18 Total: -12.30 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.16 Total: -34.46 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.80 Total: -20.26 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.50 -8.76 -38.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656507041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.509 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds