Wall clock time and date at job start Mon Mar 30 2020 01:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99953 * 2 1 4 4 H 1.48497 * 109.47150 * 239.99843 * 3 2 1 5 5 H 1.48501 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46846 * 119.99523 * 3 2 1 7 7 C 1.37872 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00237 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00010 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47454 * 300.00155 * 9 7 2 11 11 O 1.42907 * 109.47131 * 59.99426 * 9 7 2 12 12 C 1.52999 * 109.47579 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.47232 * 179.97438 * 12 9 7 14 14 C 1.46846 * 110.99937 * 294.50708 * 13 12 9 15 15 C 1.53033 * 109.51491 * 174.16872 * 14 13 12 16 16 C 1.53094 * 109.29172 * 59.18489 * 15 14 13 17 17 C 1.53117 * 109.15470 * 302.33993 * 16 15 14 18 18 C 1.46845 * 110.99528 * 170.30009 * 13 12 9 19 19 H 1.09002 * 109.46565 * 65.83646 * 18 13 12 20 20 C 1.53002 * 109.46404 * 305.84887 * 18 13 12 21 21 H 1.09002 * 109.82283 * 65.17232 * 20 18 13 22 22 C 1.54379 * 109.83178 * 304.19068 * 20 18 13 23 23 C 1.55303 * 102.25101 * 219.12832 * 22 20 18 24 24 C 1.54947 * 100.94403 * 34.13470 * 23 22 20 25 25 O 1.43239 * 109.83023 * 186.05246 * 20 18 13 26 26 H 0.96999 * 120.00282 * 0.02562 * 1 2 3 27 27 H 0.96704 * 113.99529 * 60.00408 * 11 9 7 28 28 H 1.09000 * 109.46727 * 59.92104 * 12 9 7 29 29 H 1.09003 * 109.46595 * 299.92753 * 12 9 7 30 30 H 1.09008 * 109.46037 * 294.18124 * 14 13 12 31 31 H 1.09004 * 109.46232 * 54.15843 * 14 13 12 32 32 H 1.08998 * 109.50570 * 179.11495 * 15 14 13 33 33 H 1.09000 * 109.50488 * 299.23082 * 15 14 13 34 34 H 1.08997 * 109.52904 * 182.43406 * 16 15 14 35 35 H 1.09006 * 109.58190 * 62.27357 * 16 15 14 36 36 H 1.08996 * 109.50720 * 297.71326 * 17 16 15 37 37 H 1.09002 * 109.53592 * 177.61369 * 17 16 15 38 38 H 1.09002 * 110.84911 * 337.31836 * 22 20 18 39 39 H 1.08997 * 110.84550 * 100.93693 * 22 20 18 40 40 H 1.09007 * 111.12539 * 276.21498 * 23 22 20 41 41 H 1.09006 * 111.12384 * 152.05492 * 23 22 20 42 42 H 1.09004 * 110.31097 * 204.64104 * 24 23 22 43 43 H 1.08993 * 110.31046 * 82.46988 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 0.4299 -2.5750 -1.1665 12 6 2.2454 -3.6620 0.0005 13 7 1.5108 -4.9342 0.0012 14 6 0.7557 -5.1052 1.2489 15 6 -0.1080 -6.3651 1.1551 16 6 0.7927 -7.5788 0.9116 17 6 1.6037 -7.3541 -0.3676 18 6 2.4180 -6.0656 -0.2298 19 1 3.1046 -6.1584 0.6117 20 6 3.2147 -5.8264 -1.5139 21 1 3.8669 -4.9620 -1.3887 22 6 2.2477 -5.5887 -2.6937 23 6 2.9490 -6.3480 -3.8527 24 6 3.5858 -7.5337 -3.0849 25 8 3.9979 -6.9852 -1.8229 26 1 -0.4850 0.8400 -0.0004 27 1 0.9224 -2.5299 -1.9976 28 1 2.8729 -3.6035 0.8898 29 1 2.8711 -3.6050 -0.8902 30 1 1.4503 -5.2023 2.0834 31 1 0.1158 -4.2373 1.4080 32 1 -0.6565 -6.5005 2.0872 33 1 -0.8122 -6.2630 0.3294 34 1 0.1782 -8.4723 0.8011 35 1 1.4711 -7.7055 1.7554 36 1 0.9266 -7.2675 -1.2173 37 1 2.2782 -8.1959 -0.5241 38 1 1.2681 -6.0187 -2.4850 39 1 2.1657 -4.5257 -2.9199 40 1 3.7131 -5.7286 -4.3226 41 1 2.2244 -6.6995 -4.5873 42 1 4.4479 -7.9182 -3.6300 43 1 2.8507 -8.3239 -2.9321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656507041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:19 Heat of formation + Delta-G solvation = -121.510468 kcal Electronic energy + Delta-G solvation = -22528.704729 eV Core-core repulsion = 19379.420482 eV Total energy + Delta-G solvation = -3149.284247 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29049 -39.22260 -37.42262 -34.40440 -34.12371 -33.10304 -32.49725 -29.99236 -28.91795 -26.88864 -24.67525 -24.48570 -22.68677 -21.99981 -21.66562 -20.19621 -18.99561 -17.73526 -17.07583 -16.66033 -16.50928 -16.23780 -16.11919 -15.69273 -15.22468 -15.05011 -14.69211 -14.45714 -14.26088 -13.88620 -13.86323 -13.22232 -13.05992 -12.85948 -12.73112 -12.72933 -12.57190 -12.36298 -12.05797 -12.00538 -11.85451 -11.73055 -11.46242 -11.34952 -11.20997 -10.88468 -10.66980 -10.27897 -10.05110 -9.09929 -8.12351 -6.38138 1.40203 1.41359 1.49571 2.37944 2.68320 3.13351 3.27559 3.65494 3.71429 3.94623 4.00302 4.04413 4.11639 4.20004 4.32855 4.37126 4.40173 4.45623 4.54526 4.58650 4.68938 4.72473 4.87133 4.90220 4.94387 4.98066 5.03017 5.04436 5.08576 5.13998 5.17366 5.23388 5.31838 5.40496 5.53128 5.61709 5.77418 6.00295 6.10687 6.24988 6.36930 6.74991 7.35974 7.64778 8.91602 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020686 B = 0.005914 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.256628 B = 4733.041735 C = 5548.776231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.030 3.970 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.590 4.590 8 H 0.055 0.945 9 C 0.243 3.757 10 H 0.019 0.981 11 O -0.564 6.564 12 C 0.044 3.956 13 N -0.514 5.514 14 C 0.055 3.945 15 C -0.108 4.108 16 C -0.114 4.114 17 C -0.099 4.099 18 C 0.076 3.924 19 H 0.022 0.978 20 C 0.088 3.912 21 H 0.061 0.939 22 C -0.132 4.132 23 C -0.152 4.152 24 C 0.046 3.954 25 O -0.395 6.395 26 H 0.261 0.739 27 H 0.350 0.650 28 H 0.013 0.987 29 H 0.073 0.927 30 H 0.021 0.979 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.261 -16.074 -4.489 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.173 4.173 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.628 4.628 8 H 0.073 0.927 9 C 0.185 3.815 10 H 0.037 0.963 11 O -0.366 6.366 12 C -0.084 4.084 13 N -0.240 5.240 14 C -0.073 4.073 15 C -0.146 4.146 16 C -0.152 4.152 17 C -0.137 4.137 18 C -0.033 4.033 19 H 0.040 0.960 20 C 0.030 3.970 21 H 0.078 0.922 22 C -0.169 4.169 23 C -0.190 4.190 24 C -0.030 4.030 25 O -0.314 6.314 26 H 0.070 0.930 27 H 0.194 0.806 28 H 0.031 0.969 29 H 0.092 0.908 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.454 -16.109 -4.281 17.022 hybrid contribution 1.268 1.538 0.559 2.070 sum 4.722 -14.572 -3.722 15.763 Atomic orbital electron populations 1.70205 1.07540 1.27355 1.48295 1.25834 0.95439 1.02656 0.93391 0.85673 0.78435 0.78785 0.79034 1.19159 1.20906 1.19616 1.22019 0.93378 0.92998 1.54448 0.92691 1.19086 0.87611 0.89623 0.85149 0.96288 1.86517 1.38277 1.96410 1.15428 1.22773 0.96136 0.90174 0.99334 1.61896 1.26151 1.00783 1.35148 1.22086 0.96500 0.99124 0.89593 1.21529 0.97673 0.93129 1.02251 1.21558 0.98272 0.97942 0.97399 1.21541 0.98313 0.95152 0.98691 1.21896 0.92994 0.92321 0.96098 0.96031 1.22621 0.91848 0.87552 0.94941 0.92152 1.22957 0.99204 1.01650 0.93101 1.23299 1.00641 0.96990 0.98037 1.23571 1.00159 0.95954 0.83280 1.88360 1.59417 1.43957 1.39710 0.92994 0.80637 0.96888 0.90833 0.96050 0.92776 0.90467 0.91807 0.89797 0.92469 0.91128 0.90621 0.89857 0.91186 0.90515 0.88201 0.88405 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.80 12.84 21.45 0.28 -53.53 16 2 C 0.03 1.66 5.40 84.65 0.46 2.11 16 3 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.59 -32.65 8.76 25.60 0.22 -32.43 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.24 12.50 2.69 29.85 0.08 12.58 16 10 H 0.02 1.12 6.42 -2.39 -0.02 1.10 16 11 O -0.56 -29.26 12.60 -148.98 -1.88 -31.13 16 12 C 0.04 1.84 4.22 86.30 0.36 2.20 16 13 N -0.51 -18.49 3.85 -871.08 -3.36 -21.85 16 14 C 0.05 1.94 5.29 86.32 0.46 2.40 16 15 C -0.11 -2.98 6.09 30.64 0.19 -2.79 16 16 C -0.11 -2.65 6.00 30.66 0.18 -2.47 16 17 C -0.10 -2.50 4.91 30.65 0.15 -2.35 16 18 C 0.08 2.33 1.89 44.94 0.09 2.41 16 19 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 20 C 0.09 2.59 2.76 31.06 0.09 2.68 16 21 H 0.06 1.99 6.45 -2.39 -0.02 1.97 16 22 C -0.13 -3.48 5.65 31.85 0.18 -3.30 16 23 C -0.15 -3.00 7.16 32.05 0.23 -2.77 16 24 C 0.05 0.91 7.71 72.65 0.56 1.47 16 25 O -0.40 -10.82 10.14 -148.98 -1.51 -12.33 16 26 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 27 H 0.35 16.27 9.04 -74.05 -0.67 15.60 16 28 H 0.01 0.56 8.13 -2.39 -0.02 0.55 16 29 H 0.07 2.96 5.49 -2.39 -0.01 2.95 16 30 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.05 2.25 6.20 -2.38 -0.01 2.24 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.07 1.78 6.31 -2.39 -0.02 1.77 16 37 H 0.08 1.76 7.58 -2.39 -0.02 1.74 16 38 H 0.08 2.29 6.04 -2.39 -0.01 2.27 16 39 H 0.07 2.05 7.97 -2.39 -0.02 2.04 16 40 H 0.08 1.48 8.14 -2.38 -0.02 1.47 16 41 H 0.10 1.57 8.14 -2.38 -0.02 1.56 16 42 H 0.10 1.56 8.14 -2.38 -0.02 1.55 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -63.96 325.92 -0.88 -64.84 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.32 Total: 28.70 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 3.24 Total: -20.25 kcal Atomic # 7 Polarization: -72.30 SS G_CDS: -3.08 Total: -75.38 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -3.39 Total: -43.47 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -63.96 -0.88 -64.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656507041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.672 kcal (2) G-P(sol) polarization free energy of solvation -63.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds