Wall clock time and date at job start Mon Mar 30 2020 01:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 119.99817 * 2 1 4 4 H 1.48506 * 109.47328 * 239.99863 * 3 2 1 5 5 H 1.48496 * 109.47275 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47168 * 120.00534 * 3 2 1 7 7 C 1.37883 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99870 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99660 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47000 * 299.99630 * 9 7 2 11 11 O 1.42892 * 109.47060 * 60.00176 * 9 7 2 12 12 C 1.53003 * 109.46496 * 180.02562 * 9 7 2 13 13 N 1.46907 * 109.46617 * 180.02562 * 12 9 7 14 14 C 1.46848 * 110.99958 * 314.20941 * 13 12 9 15 15 C 1.53032 * 109.52348 * 174.16258 * 14 13 12 16 16 C 1.53123 * 109.27911 * 59.17573 * 15 14 13 17 17 C 1.53123 * 109.16001 * 302.34817 * 16 15 14 18 18 C 1.46842 * 110.99676 * 189.99879 * 13 12 9 19 19 H 1.09003 * 109.45753 * 65.83035 * 18 13 12 20 20 C 1.52997 * 109.46384 * 305.85242 * 18 13 12 21 21 H 1.09002 * 109.87176 * 53.94139 * 20 18 13 22 22 C 1.54099 * 109.88028 * 174.94609 * 20 18 13 23 23 C 1.54814 * 104.18533 * 121.45558 * 22 20 18 24 24 C 1.54990 * 102.09303 * 20.88462 * 23 22 20 25 25 O 1.43748 * 109.87991 * 292.78098 * 20 18 13 26 26 H 0.96999 * 120.00463 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00418 * 59.99600 * 11 9 7 28 28 H 1.08995 * 109.47347 * 60.00036 * 12 9 7 29 29 H 1.08997 * 109.47000 * 299.99393 * 12 9 7 30 30 H 1.09003 * 109.46014 * 294.17985 * 14 13 12 31 31 H 1.08995 * 109.46374 * 54.14015 * 14 13 12 32 32 H 1.08996 * 109.50421 * 179.11872 * 15 14 13 33 33 H 1.08998 * 109.50355 * 299.19707 * 15 14 13 34 34 H 1.09000 * 109.52311 * 182.44010 * 16 15 14 35 35 H 1.09007 * 109.52076 * 62.25123 * 16 15 14 36 36 H 1.09000 * 109.50367 * 297.70910 * 17 16 15 37 37 H 1.09006 * 109.50264 * 177.59249 * 17 16 15 38 38 H 1.09004 * 110.49498 * 240.12941 * 22 20 18 39 39 H 1.08996 * 110.49125 * 2.78261 * 22 20 18 40 40 H 1.09004 * 110.90686 * 139.08022 * 23 22 20 41 41 H 1.09001 * 110.90993 * 262.68089 * 23 22 20 42 42 H 1.08997 * 110.62125 * 81.47732 * 24 23 22 43 43 H 1.09007 * 110.61872 * 204.47792 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 0.4290 -2.5746 -1.1670 12 6 2.2453 -3.6621 -0.0005 13 7 1.5108 -4.9343 -0.0012 14 6 0.4194 -4.9123 0.9812 15 6 -0.4108 -6.1913 0.8519 16 6 0.4910 -7.4057 1.0900 17 6 1.6462 -7.3786 0.0853 18 6 2.4168 -6.0651 0.2369 19 1 2.8246 -5.9976 1.2455 20 6 3.5601 -6.0248 -0.7790 21 1 4.0472 -5.0501 -0.7502 22 6 4.5838 -7.1316 -0.4599 23 6 4.6283 -7.9899 -1.7476 24 6 4.0745 -7.0083 -2.8115 25 8 3.0509 -6.2813 -2.0986 26 1 -0.4851 0.8400 0.0004 27 1 0.9208 -2.5290 -1.9983 28 1 2.8720 -3.6043 0.8894 29 1 2.8719 -3.6043 -0.8905 30 1 0.8367 -4.8502 1.9862 31 1 -0.2166 -4.0463 0.7981 32 1 -1.2113 -6.1819 1.5916 33 1 -0.8403 -6.2469 -0.1484 34 1 -0.0868 -8.3203 0.9562 35 1 0.8893 -7.3704 2.1041 36 1 1.2496 -7.4531 -0.9273 37 1 2.3153 -8.2173 0.2774 38 1 5.5631 -6.6985 -0.2562 39 1 4.2470 -7.7304 0.3862 40 1 5.6510 -8.2836 -1.9842 41 1 3.9855 -8.8653 -1.6540 42 1 4.8576 -6.3319 -3.1542 43 1 3.6434 -7.5546 -3.6505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656507042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:21 Heat of formation + Delta-G solvation = -120.911241 kcal Electronic energy + Delta-G solvation = -22393.436408 eV Core-core repulsion = 19244.178145 eV Total energy + Delta-G solvation = -3149.258263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.15517 -39.26226 -37.42072 -34.35991 -34.12058 -33.28709 -32.37455 -29.95173 -28.85699 -26.82846 -24.97543 -24.38854 -22.66202 -21.83403 -21.51392 -20.37910 -19.11823 -17.45152 -17.04075 -16.67954 -16.41736 -16.16649 -16.09784 -15.75534 -15.43978 -14.96505 -14.59129 -14.56534 -14.33877 -13.90974 -13.81325 -13.22193 -13.03640 -12.84442 -12.73585 -12.55338 -12.53996 -12.21806 -12.11018 -12.06841 -11.90384 -11.69900 -11.53930 -11.37807 -11.12561 -10.84088 -10.63895 -10.35761 -10.04806 -9.03120 -8.13631 -6.39763 1.38811 1.40977 1.49176 2.37645 2.90804 3.11881 3.19849 3.65987 3.76291 3.96977 4.02537 4.05326 4.10082 4.23852 4.30516 4.32764 4.41771 4.47322 4.51674 4.60778 4.64262 4.72965 4.85181 4.88818 4.91696 4.97096 5.00039 5.03067 5.08738 5.15098 5.16194 5.25341 5.31012 5.36113 5.56464 5.59999 5.76508 6.03045 6.11189 6.27767 6.46012 6.72971 7.33499 7.58267 8.90711 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021118 B = 0.005690 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.553808 B = 4919.491074 C = 5759.988076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.591 4.591 8 H 0.056 0.944 9 C 0.234 3.766 10 H 0.026 0.974 11 O -0.568 6.568 12 C 0.052 3.948 13 N -0.523 5.523 14 C 0.054 3.946 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.096 4.096 18 C 0.083 3.917 19 H 0.042 0.958 20 C 0.080 3.920 21 H 0.046 0.954 22 C -0.147 4.147 23 C -0.141 4.141 24 C 0.031 3.969 25 O -0.379 6.379 26 H 0.262 0.738 27 H 0.351 0.649 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.018 0.982 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.620 -18.183 -0.239 20.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.175 4.175 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.629 4.629 8 H 0.074 0.926 9 C 0.176 3.824 10 H 0.044 0.956 11 O -0.371 6.371 12 C -0.076 4.076 13 N -0.248 5.248 14 C -0.073 4.073 15 C -0.147 4.147 16 C -0.152 4.152 17 C -0.134 4.134 18 C -0.026 4.026 19 H 0.060 0.940 20 C 0.022 3.978 21 H 0.064 0.936 22 C -0.185 4.185 23 C -0.179 4.179 24 C -0.045 4.045 25 O -0.299 6.299 26 H 0.070 0.930 27 H 0.195 0.805 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.558 -18.129 -0.310 19.643 hybrid contribution 1.198 1.643 0.513 2.097 sum 8.755 -16.486 0.203 18.667 Atomic orbital electron populations 1.70210 1.07651 1.27429 1.48259 1.25888 0.95492 1.02852 0.93300 0.85610 0.78391 0.78464 0.79080 1.19261 1.20809 1.19302 1.22016 0.93398 0.92940 1.54545 0.92601 1.19264 0.87759 0.90141 0.85248 0.95614 1.86475 1.38562 1.96453 1.15654 1.22634 0.96308 0.89932 0.98700 1.61867 1.11264 1.02004 1.49665 1.22096 0.93887 0.99306 0.92055 1.21536 0.97787 0.93583 1.01817 1.21588 0.96737 0.97833 0.99036 1.21466 0.97030 0.94834 1.00038 1.21962 0.92527 0.92496 0.95594 0.94014 1.22802 0.93304 0.98031 0.83676 0.93628 1.23018 0.98937 0.96579 1.00002 1.23082 1.03128 0.98324 0.93343 1.23766 0.91019 0.93511 0.96214 1.89024 1.40010 1.76530 1.24304 0.92959 0.80486 0.96418 0.91955 0.96345 0.92738 0.90785 0.92514 0.89905 0.91847 0.91962 0.89677 0.89919 0.89172 0.88356 0.89766 0.92536 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.17 12.84 21.45 0.28 -54.90 16 2 C 0.03 1.56 5.40 84.66 0.46 2.02 16 3 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.59 -33.74 8.76 25.60 0.22 -33.52 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.23 12.58 2.12 29.85 0.06 12.65 16 10 H 0.03 1.55 6.21 -2.39 -0.01 1.53 16 11 O -0.57 -31.77 12.39 -148.98 -1.85 -33.61 16 12 C 0.05 2.33 3.98 86.30 0.34 2.67 16 13 N -0.52 -20.48 4.49 -871.12 -3.91 -24.39 16 14 C 0.05 2.11 4.85 86.32 0.42 2.53 16 15 C -0.11 -3.35 6.09 30.65 0.19 -3.16 16 16 C -0.11 -2.75 6.00 30.68 0.18 -2.56 16 17 C -0.10 -2.44 4.95 30.65 0.15 -2.29 16 18 C 0.08 2.53 1.53 44.94 0.07 2.60 16 19 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 20 C 0.08 2.29 2.80 30.96 0.09 2.37 16 21 H 0.05 1.50 6.23 -2.39 -0.01 1.48 16 22 C -0.15 -2.83 6.18 31.59 0.20 -2.64 16 23 C -0.14 -2.24 7.15 31.89 0.23 -2.01 16 24 C 0.03 0.67 7.72 72.66 0.56 1.23 16 25 O -0.38 -11.79 10.22 -148.98 -1.52 -13.32 16 26 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 27 H 0.35 18.15 9.04 -74.06 -0.67 17.48 16 28 H 0.02 0.78 8.08 -2.39 -0.02 0.76 16 29 H 0.06 2.81 6.71 -2.39 -0.02 2.79 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 2.56 5.65 -2.39 -0.01 2.55 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.06 1.83 7.50 -2.39 -0.02 1.81 16 37 H 0.08 1.67 6.76 -2.38 -0.02 1.66 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.52 6.59 -2.39 -0.02 1.50 16 40 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 42 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -68.47 326.73 -1.49 -69.96 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.32 Total: 29.97 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 3.17 Total: -20.09 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -3.64 Total: -79.28 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -3.37 Total: -46.93 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -68.47 -1.49 -69.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656507042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.951 kcal (2) G-P(sol) polarization free energy of solvation -68.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds