Wall clock time and date at job start Mon Mar 30 2020 01:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99758 * 2 1 4 4 H 1.48503 * 109.47261 * 269.99890 * 3 2 1 5 5 H 1.48494 * 109.47464 * 29.99882 * 3 2 1 6 6 H 1.48502 * 109.46900 * 150.00500 * 3 2 1 7 7 C 1.37875 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99969 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99655 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.47033 * 299.99495 * 9 7 2 11 11 O 1.42898 * 109.47409 * 59.99824 * 9 7 2 12 12 C 1.53008 * 109.47079 * 179.97438 * 9 7 2 13 13 N 1.46894 * 109.47435 * 173.20998 * 12 9 7 14 14 C 1.46846 * 110.99750 * 77.01199 * 13 12 9 15 15 C 1.53042 * 109.52065 * 185.83999 * 14 13 12 16 16 C 1.53116 * 109.27836 * 300.82021 * 15 14 13 17 17 C 1.53118 * 109.16172 * 57.65797 * 16 15 14 18 18 C 1.46849 * 111.00157 * 201.22434 * 13 12 9 19 19 H 1.09002 * 109.46017 * 294.17658 * 18 13 12 20 20 C 1.53002 * 109.46107 * 54.14704 * 18 13 12 21 21 H 1.08997 * 110.26969 * 295.84030 * 20 18 13 22 22 C 1.54940 * 110.31224 * 57.92908 * 20 18 13 23 23 C 1.55411 * 100.89513 * 155.28686 * 22 20 18 24 24 C 1.54383 * 102.30959 * 325.99484 * 23 22 20 25 25 O 1.43246 * 107.58889 * 21.28284 * 24 23 22 26 26 H 0.96999 * 120.00324 * 0.02562 * 1 2 3 27 27 H 0.96698 * 113.99688 * 59.99919 * 11 9 7 28 28 H 1.09000 * 109.47153 * 293.21409 * 12 9 7 29 29 H 1.09003 * 109.46944 * 53.20599 * 12 9 7 30 30 H 1.09000 * 109.46866 * 305.85836 * 14 13 12 31 31 H 1.09004 * 109.46289 * 65.82721 * 14 13 12 32 32 H 1.09000 * 109.50198 * 60.76913 * 15 14 13 33 33 H 1.09009 * 109.50328 * 180.84309 * 15 14 13 34 34 H 1.09000 * 109.51979 * 177.56177 * 16 15 14 35 35 H 1.08998 * 109.52772 * 297.68427 * 16 15 14 36 36 H 1.09008 * 109.50406 * 62.28259 * 17 16 15 37 37 H 1.08992 * 109.50693 * 182.35832 * 17 16 15 38 38 H 1.08999 * 111.12941 * 273.28059 * 22 20 18 39 39 H 1.09005 * 111.12424 * 37.43896 * 22 20 18 40 40 H 1.08995 * 110.88645 * 207.76034 * 23 22 20 41 41 H 1.08998 * 110.75713 * 84.16873 * 23 22 20 42 42 H 1.09002 * 109.83236 * 261.77255 * 24 23 22 43 43 H 1.08995 * 109.90944 * 140.83636 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8744 -0.6800 -0.8912 11 8 3.9883 -0.5206 1.1656 12 6 4.0216 -2.6365 -0.0010 13 7 5.4813 -2.6398 -0.1653 14 6 6.1529 -2.2802 1.0901 15 6 7.6583 -2.1517 0.8461 16 6 8.2004 -3.4830 0.3186 17 6 7.4509 -3.8586 -0.9627 18 6 5.9516 -3.9376 -0.6663 19 1 5.7701 -4.7049 0.0864 20 6 5.1965 -4.2930 -1.9487 21 1 4.1354 -4.4259 -1.7376 22 6 5.3982 -3.1877 -3.0155 23 6 5.1557 -3.9930 -4.3224 24 6 5.7228 -5.3830 -3.9625 25 8 5.7416 -5.4862 -2.5338 26 1 -0.4850 0.8400 -0.0004 27 1 3.7033 -0.9243 1.9967 28 1 3.7611 -3.1139 0.9437 29 1 3.5620 -3.1844 -0.8237 30 1 5.7612 -1.3297 1.4523 31 1 5.9705 -3.0553 1.8345 32 1 7.8423 -1.3673 0.1120 33 1 8.1583 -1.8994 1.7813 34 1 9.2640 -3.3832 0.1025 35 1 8.0526 -4.2596 1.0691 36 1 7.6317 -3.1010 -1.7254 37 1 7.8033 -4.8261 -1.3201 38 1 4.6626 -2.3916 -2.9006 39 1 6.4127 -2.7902 -2.9824 40 1 5.7038 -3.5546 -5.1563 41 1 4.0907 -4.0547 -4.5461 42 1 6.7354 -5.4820 -4.3537 43 1 5.0869 -6.1631 -4.3811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656507043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:24 Heat of formation + Delta-G solvation = -94.879428 kcal Electronic energy + Delta-G solvation = -22544.896017 eV Core-core repulsion = 19396.766578 eV Total energy + Delta-G solvation = -3148.129439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.04943 -38.11273 -36.03929 -33.11542 -32.27962 -31.92638 -31.43641 -28.71168 -27.71547 -25.20624 -23.63966 -22.68953 -21.63594 -20.82275 -20.18215 -19.02454 -17.28483 -16.69008 -15.93867 -15.13329 -15.00060 -14.83054 -14.56401 -14.34345 -14.21914 -13.77000 -13.55918 -13.05627 -12.89125 -12.68947 -12.56082 -12.08739 -11.62086 -11.56244 -11.40297 -11.19982 -11.16884 -10.94445 -10.75631 -10.63007 -10.43642 -10.27123 -10.21097 -10.03545 -9.91411 -9.21869 -9.00303 -8.61848 -8.24144 -7.69128 -6.12833 -4.24130 3.40274 3.49593 3.74693 3.76074 4.51847 4.54272 4.64171 4.83568 4.99086 5.07384 5.07889 5.16385 5.20826 5.27605 5.38067 5.52869 5.63115 5.72077 5.74991 5.81950 5.84351 5.89252 5.92774 5.99615 6.04021 6.08653 6.12216 6.21514 6.25951 6.30156 6.36607 6.44108 6.54651 6.62643 6.76928 7.12387 7.29652 7.51589 7.63554 7.77317 8.28081 8.82689 9.01396 9.52138 10.97770 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.006727 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.970058 B = 4161.425783 C = 5131.168372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.084 3.916 3 Si 0.873 3.127 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.216 1.216 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.204 3.796 10 H 0.062 0.938 11 O -0.576 6.576 12 C 0.033 3.967 13 N -0.523 5.523 14 C 0.044 3.956 15 C -0.116 4.116 16 C -0.120 4.120 17 C -0.105 4.105 18 C 0.087 3.913 19 H 0.037 0.963 20 C 0.083 3.917 21 H 0.075 0.925 22 C -0.136 4.136 23 C -0.161 4.161 24 C 0.054 3.946 25 O -0.383 6.383 26 H 0.264 0.736 27 H 0.352 0.648 28 H 0.029 0.971 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.019 0.981 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.607 -7.575 -3.689 16.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.121 4.121 3 Si 0.699 3.301 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.138 1.138 7 C -0.602 4.602 8 H 0.088 0.912 9 C 0.147 3.853 10 H 0.080 0.920 11 O -0.382 6.382 12 C -0.095 4.095 13 N -0.249 5.249 14 C -0.083 4.083 15 C -0.154 4.154 16 C -0.158 4.158 17 C -0.143 4.143 18 C -0.022 4.022 19 H 0.055 0.945 20 C 0.026 3.974 21 H 0.093 0.907 22 C -0.174 4.174 23 C -0.199 4.199 24 C -0.023 4.023 25 O -0.302 6.302 26 H 0.074 0.926 27 H 0.198 0.802 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.129 0.871 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.934 -6.935 -4.376 17.037 hybrid contribution -0.502 -0.136 0.713 0.883 sum 14.432 -7.071 -3.663 16.483 Atomic orbital electron populations 1.69962 1.06827 1.27450 1.48859 1.24990 0.94584 0.99987 0.92494 0.87004 0.83008 0.81701 0.78378 1.21467 1.22471 1.13824 1.21513 0.89952 0.94722 1.54062 0.91194 1.19763 0.92840 0.87132 0.85593 0.92004 1.86662 1.77015 1.58099 1.16454 1.22968 0.85348 1.01089 1.00054 1.61974 1.06302 1.27087 1.29548 1.22482 0.93653 1.02531 0.89625 1.21592 0.95708 0.97379 1.00678 1.21593 0.99013 0.97686 0.97520 1.21564 0.93600 1.01530 0.97620 1.21539 0.94907 0.91057 0.94663 0.94477 1.23059 0.96885 0.83947 0.93498 0.90729 1.23204 1.03881 0.98282 0.92023 1.23190 1.02053 0.95463 0.99174 1.23047 1.00263 0.97047 0.81911 1.88341 1.84507 1.38961 1.18391 0.92623 0.80181 0.95299 0.90580 0.87142 0.96240 0.91348 0.92252 0.92441 0.92747 0.91259 0.91515 0.88979 0.90006 0.90378 0.90600 0.91850 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.96 55.43 0.77 -26.25 16 2 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 3 Si 0.87 21.61 26.99 -169.99 -4.59 17.02 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.22 -5.19 5.31 56.52 0.30 -4.89 16 7 C -0.56 -15.28 9.34 -34.44 -0.32 -15.60 16 8 H 0.07 2.05 7.99 -52.49 -0.42 1.64 16 9 C 0.20 4.59 2.53 -27.88 -0.07 4.52 16 10 H 0.06 1.47 7.57 -51.93 -0.39 1.08 16 11 O -0.58 -12.36 7.32 -35.23 -0.26 -12.61 16 12 C 0.03 0.62 4.57 -3.82 -0.02 0.61 16 13 N -0.52 -8.69 3.98 -226.68 -0.90 -9.59 16 14 C 0.04 0.69 5.21 -3.83 -0.02 0.67 16 15 C -0.12 -1.53 6.09 -26.65 -0.16 -1.69 16 16 C -0.12 -1.47 6.00 -26.61 -0.16 -1.63 16 17 C -0.11 -1.40 4.95 -26.65 -0.13 -1.53 16 18 C 0.09 1.32 1.95 -67.72 -0.13 1.19 16 19 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 20 C 0.08 1.25 2.68 -25.71 -0.07 1.18 16 21 H 0.08 1.22 6.19 -51.93 -0.32 0.90 16 22 C -0.14 -1.89 6.06 -24.43 -0.15 -2.04 16 23 C -0.16 -1.86 7.02 -24.73 -0.17 -2.03 16 24 C 0.05 0.63 7.80 37.88 0.30 0.93 16 25 O -0.38 -5.60 10.19 -35.23 -0.36 -5.96 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.35 6.77 9.02 45.56 0.41 7.18 16 28 H 0.03 0.56 7.98 -51.93 -0.41 0.15 16 29 H 0.08 1.47 5.31 -51.93 -0.28 1.20 16 30 H 0.11 1.88 5.27 -51.93 -0.27 1.61 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.93 6.19 -51.92 -0.32 0.61 16 37 H 0.07 0.87 7.60 -51.93 -0.39 0.48 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.08 1.11 6.00 -51.93 -0.31 0.80 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 318.60 15.07 4.80 4.80 Total: -1.00 -29.74 318.60 -8.34 -38.08 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.60 Total: 7.68 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.21 Total: -13.16 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.13 Total: -35.83 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.62 Total: -18.58 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.59 Total: 17.02 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.74 -8.34 -38.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656507043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.802 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds