Wall clock time and date at job start Mon Mar 30 2020 01:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99758 * 2 1 4 4 H 1.48503 * 109.47261 * 269.99890 * 3 2 1 5 5 H 1.48494 * 109.47464 * 29.99882 * 3 2 1 6 6 H 1.48502 * 109.46900 * 150.00500 * 3 2 1 7 7 C 1.37875 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99969 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99655 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.47033 * 299.99495 * 9 7 2 11 11 O 1.42898 * 109.47409 * 59.99824 * 9 7 2 12 12 C 1.53008 * 109.47079 * 179.97438 * 9 7 2 13 13 N 1.46894 * 109.47435 * 173.20998 * 12 9 7 14 14 C 1.46846 * 110.99750 * 77.01199 * 13 12 9 15 15 C 1.53042 * 109.52065 * 185.83999 * 14 13 12 16 16 C 1.53116 * 109.27836 * 300.82021 * 15 14 13 17 17 C 1.53118 * 109.16172 * 57.65797 * 16 15 14 18 18 C 1.46849 * 111.00157 * 201.22434 * 13 12 9 19 19 H 1.09002 * 109.46017 * 294.17658 * 18 13 12 20 20 C 1.53002 * 109.46107 * 54.14704 * 18 13 12 21 21 H 1.08997 * 110.26969 * 295.84030 * 20 18 13 22 22 C 1.54940 * 110.31224 * 57.92908 * 20 18 13 23 23 C 1.55411 * 100.89513 * 155.28686 * 22 20 18 24 24 C 1.54383 * 102.30959 * 325.99484 * 23 22 20 25 25 O 1.43246 * 107.58889 * 21.28284 * 24 23 22 26 26 H 0.96999 * 120.00324 * 0.02562 * 1 2 3 27 27 H 0.96698 * 113.99688 * 59.99919 * 11 9 7 28 28 H 1.09000 * 109.47153 * 293.21409 * 12 9 7 29 29 H 1.09003 * 109.46944 * 53.20599 * 12 9 7 30 30 H 1.09000 * 109.46866 * 305.85836 * 14 13 12 31 31 H 1.09004 * 109.46289 * 65.82721 * 14 13 12 32 32 H 1.09000 * 109.50198 * 60.76913 * 15 14 13 33 33 H 1.09009 * 109.50328 * 180.84309 * 15 14 13 34 34 H 1.09000 * 109.51979 * 177.56177 * 16 15 14 35 35 H 1.08998 * 109.52772 * 297.68427 * 16 15 14 36 36 H 1.09008 * 109.50406 * 62.28259 * 17 16 15 37 37 H 1.08992 * 109.50693 * 182.35832 * 17 16 15 38 38 H 1.08999 * 111.12941 * 273.28059 * 22 20 18 39 39 H 1.09005 * 111.12424 * 37.43896 * 22 20 18 40 40 H 1.08995 * 110.88645 * 207.76034 * 23 22 20 41 41 H 1.08998 * 110.75713 * 84.16873 * 23 22 20 42 42 H 1.09002 * 109.83236 * 261.77255 * 24 23 22 43 43 H 1.08995 * 109.90944 * 140.83636 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8744 -0.6800 -0.8912 11 8 3.9883 -0.5206 1.1656 12 6 4.0216 -2.6365 -0.0010 13 7 5.4813 -2.6398 -0.1653 14 6 6.1529 -2.2802 1.0901 15 6 7.6583 -2.1517 0.8461 16 6 8.2004 -3.4830 0.3186 17 6 7.4509 -3.8586 -0.9627 18 6 5.9516 -3.9376 -0.6663 19 1 5.7701 -4.7049 0.0864 20 6 5.1965 -4.2930 -1.9487 21 1 4.1354 -4.4259 -1.7376 22 6 5.3982 -3.1877 -3.0155 23 6 5.1557 -3.9930 -4.3224 24 6 5.7228 -5.3830 -3.9625 25 8 5.7416 -5.4862 -2.5338 26 1 -0.4850 0.8400 -0.0004 27 1 3.7033 -0.9243 1.9967 28 1 3.7611 -3.1139 0.9437 29 1 3.5620 -3.1844 -0.8237 30 1 5.7612 -1.3297 1.4523 31 1 5.9705 -3.0553 1.8345 32 1 7.8423 -1.3673 0.1120 33 1 8.1583 -1.8994 1.7813 34 1 9.2640 -3.3832 0.1025 35 1 8.0526 -4.2596 1.0691 36 1 7.6317 -3.1010 -1.7254 37 1 7.8033 -4.8261 -1.3201 38 1 4.6626 -2.3916 -2.9006 39 1 6.4127 -2.7902 -2.9824 40 1 5.7038 -3.5546 -5.1563 41 1 4.0907 -4.0547 -4.5461 42 1 6.7354 -5.4820 -4.3537 43 1 5.0869 -6.1631 -4.3811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656507043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:23 Heat of formation + Delta-G solvation = -115.839845 kcal Electronic energy + Delta-G solvation = -22545.804929 eV Core-core repulsion = 19396.766578 eV Total energy + Delta-G solvation = -3149.038351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22948 -39.35633 -37.68671 -34.43972 -34.36986 -33.05648 -32.54259 -30.45646 -28.82226 -26.94143 -24.75274 -24.10426 -22.64071 -22.29235 -21.57319 -20.23926 -19.25407 -17.82412 -17.14909 -16.83086 -16.49110 -16.30619 -16.03407 -15.69032 -15.37216 -15.09171 -14.91943 -14.57738 -14.27898 -14.05554 -13.88112 -13.50640 -13.05806 -12.98653 -12.70807 -12.62206 -12.43982 -12.30410 -12.19342 -12.01131 -11.90417 -11.63390 -11.36964 -11.33983 -11.14837 -11.05250 -10.77837 -10.31533 -9.96703 -9.11384 -8.33931 -6.48551 1.42274 1.47396 1.77546 2.45671 2.59942 3.04423 3.25359 3.60807 3.71171 3.94643 3.99690 4.02841 4.06421 4.11420 4.23464 4.35203 4.38971 4.45494 4.48484 4.59520 4.66978 4.74216 4.82925 4.86391 4.94510 4.98649 5.01546 5.08838 5.12625 5.15403 5.19313 5.24141 5.38475 5.40858 5.45432 5.54007 5.60860 6.03430 6.08421 6.26635 6.34890 6.64317 7.19085 7.35197 8.80326 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.006727 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.970058 B = 4161.425783 C = 5131.168372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.030 3.970 3 Si 0.940 3.060 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.033 0.967 9 C 0.218 3.782 10 H 0.055 0.945 11 O -0.574 6.574 12 C 0.047 3.953 13 N -0.522 5.522 14 C 0.042 3.958 15 C -0.110 4.110 16 C -0.117 4.117 17 C -0.099 4.099 18 C 0.089 3.911 19 H 0.025 0.975 20 C 0.084 3.916 21 H 0.051 0.949 22 C -0.134 4.134 23 C -0.155 4.155 24 C 0.048 3.952 25 O -0.396 6.396 26 H 0.266 0.734 27 H 0.364 0.636 28 H 0.022 0.978 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.020 0.980 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.552 -7.404 -4.098 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.170 4.170 3 Si 0.764 3.236 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.122 1.122 7 C -0.603 4.603 8 H 0.051 0.949 9 C 0.159 3.841 10 H 0.072 0.928 11 O -0.381 6.381 12 C -0.081 4.081 13 N -0.248 5.248 14 C -0.086 4.086 15 C -0.148 4.148 16 C -0.154 4.154 17 C -0.136 4.136 18 C -0.020 4.020 19 H 0.043 0.957 20 C 0.027 3.973 21 H 0.068 0.932 22 C -0.172 4.172 23 C -0.193 4.193 24 C -0.028 4.028 25 O -0.316 6.316 26 H 0.075 0.925 27 H 0.212 0.788 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.900 -6.785 -4.780 19.730 hybrid contribution -1.456 -0.299 0.841 1.707 sum 16.444 -7.084 -3.939 18.333 Atomic orbital electron populations 1.70090 1.08580 1.28357 1.51020 1.25844 0.95202 1.03601 0.92349 0.85978 0.82054 0.77247 0.78318 1.21373 1.22756 1.12234 1.21833 0.92500 0.93134 1.52797 0.94897 1.19450 0.89807 0.89066 0.85729 0.92767 1.86591 1.76613 1.58189 1.16661 1.22621 0.87460 0.98602 0.99450 1.61918 1.04413 1.28199 1.30308 1.22509 0.95366 1.01679 0.88998 1.21562 0.93729 0.97892 1.01622 1.21583 1.00066 0.96989 0.96778 1.21522 0.91783 1.01931 0.98377 1.21570 0.96507 0.89675 0.94253 0.95726 1.22917 0.95611 0.84764 0.94056 0.93156 1.23133 1.03505 0.97495 0.93064 1.23184 1.02230 0.95156 0.98696 1.23268 1.01833 0.97277 0.80400 1.88319 1.84358 1.38707 1.20167 0.92524 0.78839 0.95950 0.91387 0.88487 0.96209 0.91775 0.90363 0.90181 0.92608 0.91100 0.90937 0.91242 0.89249 0.88025 0.91103 0.89724 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.35 13.96 21.45 0.30 -58.05 16 2 C 0.03 1.70 5.47 84.65 0.46 2.16 16 3 Si 0.94 44.85 26.99 68.60 1.85 46.70 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 6 H -0.20 -9.01 5.31 99.48 0.53 -8.48 16 7 C -0.56 -31.32 9.34 25.60 0.24 -31.08 16 8 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 9 C 0.22 9.77 2.53 29.85 0.08 9.85 16 10 H 0.05 2.56 7.57 -2.39 -0.02 2.54 16 11 O -0.57 -23.85 7.32 -148.98 -1.09 -24.94 16 12 C 0.05 1.81 4.57 86.31 0.39 2.20 16 13 N -0.52 -16.97 3.98 -871.08 -3.47 -20.43 16 14 C 0.04 1.23 5.21 86.33 0.45 1.68 16 15 C -0.11 -2.60 6.09 30.65 0.19 -2.41 16 16 C -0.12 -2.47 6.00 30.67 0.18 -2.29 16 17 C -0.10 -2.37 4.95 30.65 0.15 -2.22 16 18 C 0.09 2.60 1.95 44.94 0.09 2.69 16 19 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 20 C 0.08 2.50 2.68 31.26 0.08 2.58 16 21 H 0.05 1.72 6.19 -2.39 -0.01 1.71 16 22 C -0.13 -3.62 6.06 32.09 0.19 -3.42 16 23 C -0.16 -3.32 7.02 31.89 0.22 -3.10 16 24 C 0.05 1.02 7.80 72.45 0.56 1.59 16 25 O -0.40 -11.10 10.19 -148.98 -1.52 -12.62 16 26 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 27 H 0.36 13.59 9.02 -74.06 -0.67 12.92 16 28 H 0.02 0.88 7.98 -2.39 -0.02 0.86 16 29 H 0.07 2.74 5.31 -2.39 -0.01 2.73 16 30 H 0.10 3.14 5.27 -2.39 -0.01 3.12 16 31 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.70 6.19 -2.38 -0.01 1.69 16 37 H 0.07 1.69 7.60 -2.39 -0.02 1.67 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.09 2.25 6.00 -2.38 -0.01 2.24 16 40 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -64.25 318.60 -0.48 -64.74 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.14 Total: 26.38 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 3.30 Total: -21.77 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -3.17 Total: -78.49 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -2.61 Total: -37.56 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.85 Total: 46.70 kcal Total: -64.25 -0.48 -64.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656507043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.105 kcal (2) G-P(sol) polarization free energy of solvation -64.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds