Wall clock time and date at job start Mon Mar 30 2020 01:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47156 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47287 * 119.99936 * 3 2 1 6 6 H 1.48502 * 109.47555 * 239.99684 * 3 2 1 7 7 C 1.37877 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00207 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47581 * 299.99685 * 9 7 2 11 11 O 1.42895 * 109.47538 * 59.99650 * 9 7 2 12 12 C 1.53005 * 109.47202 * 180.02562 * 9 7 2 13 13 N 1.46895 * 109.47059 * 173.36304 * 12 9 7 14 14 C 1.46856 * 111.00081 * 76.63894 * 13 12 9 15 15 C 1.53039 * 109.52230 * 185.83647 * 14 13 12 16 16 C 1.53114 * 109.28179 * 300.82129 * 15 14 13 17 17 C 1.53123 * 109.16230 * 57.65501 * 16 15 14 18 18 C 1.46853 * 111.00138 * 200.84717 * 13 12 9 19 19 H 1.09000 * 109.45861 * 294.17883 * 18 13 12 20 20 C 1.53001 * 109.45922 * 54.14579 * 18 13 12 21 21 H 1.09003 * 109.82023 * 301.37442 * 20 18 13 22 22 C 1.54381 * 109.83022 * 180.39937 * 20 18 13 23 23 C 1.55302 * 102.25321 * 219.13021 * 22 20 18 24 24 C 1.54950 * 100.94339 * 34.12974 * 23 22 20 25 25 O 1.43236 * 109.82975 * 62.26645 * 20 18 13 26 26 H 0.96995 * 120.00422 * 0.02562 * 1 2 3 27 27 H 0.96705 * 113.99370 * 60.00228 * 11 9 7 28 28 H 1.08997 * 109.47101 * 293.36309 * 12 9 7 29 29 H 1.08994 * 109.47093 * 53.36147 * 12 9 7 30 30 H 1.08995 * 109.46281 * 305.85240 * 14 13 12 31 31 H 1.08998 * 109.45826 * 65.82407 * 14 13 12 32 32 H 1.09007 * 109.50333 * 60.76394 * 15 14 13 33 33 H 1.08997 * 109.50258 * 180.83830 * 15 14 13 34 34 H 1.08997 * 109.52422 * 177.56220 * 16 15 14 35 35 H 1.08998 * 109.52263 * 297.75279 * 16 15 14 36 36 H 1.08997 * 109.50091 * 62.28418 * 17 16 15 37 37 H 1.09000 * 109.50367 * 182.37025 * 17 16 15 38 38 H 1.09004 * 110.84548 * 337.31664 * 22 20 18 39 39 H 1.09001 * 110.84862 * 100.93345 * 22 20 18 40 40 H 1.09001 * 111.12346 * 276.21480 * 23 22 20 41 41 H 1.09000 * 111.16437 * 152.06345 * 23 22 20 42 42 H 1.08991 * 110.30863 * 204.64089 * 24 23 22 43 43 H 1.09005 * 110.39204 * 82.51316 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5568 0.8903 11 8 0.4299 -2.5751 -1.1664 12 6 2.2453 -3.6621 0.0018 13 7 1.5177 -4.9281 0.1619 14 6 0.8671 -5.3236 -1.0938 15 6 0.0028 -6.5636 -0.8536 16 6 0.8852 -7.7018 -0.3337 17 6 1.5887 -7.2471 0.9481 18 6 2.4070 -5.9874 0.6557 19 1 3.1601 -6.2107 -0.0999 20 6 3.0958 -5.5177 1.9386 21 1 3.6617 -4.6070 1.7421 22 6 4.0408 -6.6216 2.4599 23 6 3.8302 -6.5373 3.9962 24 6 2.3305 -6.1540 4.0670 25 8 2.1160 -5.2716 2.9540 26 1 -0.4850 0.8400 -0.0004 27 1 0.9223 -2.5300 -1.9974 28 1 2.7919 -3.6738 -0.9411 29 1 2.9468 -3.5393 0.8269 30 1 0.2394 -4.5070 -1.4505 31 1 1.6275 -5.5502 -1.8411 32 1 -0.7665 -6.3337 -0.1164 33 1 -0.4682 -6.8656 -1.7890 34 1 0.2668 -8.5736 -0.1202 35 1 1.6303 -7.9582 -1.0867 36 1 0.8443 -7.0280 1.7136 37 1 2.2508 -8.0382 1.3001 38 1 3.7422 -7.5988 2.0805 39 1 5.0758 -6.4020 2.1975 40 1 4.4553 -5.7604 4.4364 41 1 4.0121 -7.5010 4.4719 42 1 2.1150 -5.6406 5.0039 43 1 1.7064 -7.0426 3.9709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656507044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:26 Heat of formation + Delta-G solvation = -95.159871 kcal Electronic energy + Delta-G solvation = -22459.078337 eV Core-core repulsion = 19310.936737 eV Total energy + Delta-G solvation = -3148.141600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.00063 -37.84268 -35.58328 -32.82616 -32.17705 -32.00735 -31.14174 -28.33933 -27.72551 -24.95438 -23.49092 -22.79604 -21.53633 -20.60364 -20.03299 -19.17405 -16.90649 -16.57330 -15.90539 -15.25464 -14.73424 -14.46248 -14.45629 -14.35550 -13.79774 -13.55618 -13.39667 -13.10258 -12.83445 -12.55199 -12.26261 -11.94128 -11.63195 -11.31340 -11.15130 -10.96496 -10.94063 -10.81015 -10.76951 -10.71053 -10.62567 -10.36457 -10.23128 -9.89302 -9.85883 -9.06186 -8.83240 -8.46975 -8.01894 -7.36632 -5.91092 -4.08989 3.33680 3.38928 3.40489 3.99758 4.42021 4.53102 4.58640 4.83740 4.94365 5.10285 5.15162 5.21665 5.31684 5.34994 5.37950 5.54174 5.66187 5.67640 5.75295 5.81085 5.85870 5.94774 5.96169 6.01832 6.10953 6.15566 6.23286 6.26222 6.29518 6.42161 6.50064 6.60086 6.75575 6.85383 7.09513 7.35940 7.72394 7.85861 7.91816 8.14106 8.32811 8.94611 9.47994 9.67808 11.12934 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019028 B = 0.006143 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.157032 B = 4557.123297 C = 5574.705185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.887 3.113 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.571 4.571 8 H 0.052 0.948 9 C 0.240 3.760 10 H 0.066 0.934 11 O -0.559 6.559 12 C 0.028 3.972 13 N -0.513 5.513 14 C 0.043 3.957 15 C -0.115 4.115 16 C -0.119 4.119 17 C -0.109 4.109 18 C 0.074 3.926 19 H 0.035 0.965 20 C 0.084 3.916 21 H 0.085 0.915 22 C -0.155 4.155 23 C -0.155 4.155 24 C 0.047 3.953 25 O -0.347 6.347 26 H 0.260 0.740 27 H 0.338 0.662 28 H 0.017 0.983 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.013 0.987 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.200 -15.973 3.308 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.610 4.610 8 H 0.070 0.930 9 C 0.183 3.817 10 H 0.084 0.916 11 O -0.361 6.361 12 C -0.099 4.099 13 N -0.238 5.238 14 C -0.084 4.084 15 C -0.153 4.153 16 C -0.157 4.157 17 C -0.146 4.146 18 C -0.035 4.035 19 H 0.053 0.947 20 C 0.026 3.974 21 H 0.103 0.897 22 C -0.193 4.193 23 C -0.193 4.193 24 C -0.030 4.030 25 O -0.266 6.266 26 H 0.070 0.930 27 H 0.181 0.819 28 H 0.035 0.965 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.031 0.969 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.008 -15.680 4.105 16.965 hybrid contribution 1.953 0.657 -0.945 2.267 sum 6.961 -15.023 3.160 16.857 Atomic orbital electron populations 1.70073 1.05853 1.26337 1.47063 1.25008 0.94651 0.98918 0.93979 0.86776 0.79740 0.83470 0.78565 1.21238 1.20215 1.20308 1.21605 0.92970 0.91722 1.54666 0.93004 1.19349 0.88107 0.88282 0.86001 0.91620 1.86562 1.38818 1.95436 1.15308 1.23162 0.97678 0.90360 0.98690 1.61917 1.30831 1.01985 1.29049 1.22501 0.97390 0.98778 0.89736 1.21574 0.98435 0.94680 1.00598 1.21577 0.98765 0.98024 0.97292 1.21601 0.99317 0.95458 0.98244 1.21935 0.93848 0.92860 0.94867 0.94736 1.22932 0.88622 0.97363 0.88460 0.89734 1.23285 1.00406 1.00104 0.95529 1.23247 0.97615 1.02250 0.96189 1.23354 0.94410 0.94181 0.91075 1.88653 1.52857 1.58123 1.26961 0.93040 0.81873 0.96503 0.91003 0.86995 0.96904 0.91186 0.92412 0.92550 0.92996 0.90560 0.92574 0.90162 0.90442 0.90528 0.90439 0.90192 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.93 12.84 55.43 0.71 -25.22 16 2 C 0.08 2.30 5.40 -17.82 -0.10 2.21 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.57 -16.02 8.76 -34.44 -0.30 -16.32 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.24 6.28 3.04 -27.88 -0.08 6.19 16 10 H 0.07 1.98 8.14 -51.93 -0.42 1.56 16 11 O -0.56 -14.41 9.88 -35.23 -0.35 -14.76 16 12 C 0.03 0.61 4.58 -3.82 -0.02 0.59 16 13 N -0.51 -9.84 4.33 -226.68 -0.98 -10.82 16 14 C 0.04 0.77 5.21 -3.83 -0.02 0.75 16 15 C -0.12 -1.74 6.09 -26.65 -0.16 -1.90 16 16 C -0.12 -1.55 6.00 -26.61 -0.16 -1.71 16 17 C -0.11 -1.49 4.93 -26.65 -0.13 -1.62 16 18 C 0.07 1.17 1.75 -67.72 -0.12 1.05 16 19 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 20 C 0.08 1.28 2.86 -26.01 -0.07 1.21 16 21 H 0.09 1.42 5.86 -51.93 -0.30 1.11 16 22 C -0.16 -1.73 6.35 -24.79 -0.16 -1.89 16 23 C -0.16 -1.58 7.16 -24.48 -0.18 -1.76 16 24 C 0.05 0.59 7.75 38.19 0.30 0.88 16 25 O -0.35 -5.97 10.18 -35.23 -0.36 -6.33 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 27 H 0.34 7.80 9.02 45.56 0.41 8.22 16 28 H 0.02 0.35 7.99 -51.93 -0.41 -0.06 16 29 H 0.07 1.54 5.21 -51.93 -0.27 1.27 16 30 H 0.11 2.25 5.24 -51.93 -0.27 1.98 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 1.18 7.62 -51.93 -0.40 0.78 16 37 H 0.06 0.65 6.14 -51.93 -0.32 0.33 16 38 H 0.08 0.82 5.80 -51.93 -0.30 0.52 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 324.59 15.07 4.89 4.89 Total: -1.00 -31.32 324.59 -8.79 -40.11 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.48 Total: 7.92 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.20 Total: -12.32 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.27 Total: -36.04 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.71 Total: -21.09 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.32 -8.79 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656507044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.052 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds