Wall clock time and date at job start Mon Mar 30 2020 01:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47156 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47287 * 119.99936 * 3 2 1 6 6 H 1.48502 * 109.47555 * 239.99684 * 3 2 1 7 7 C 1.37877 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00207 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.47581 * 299.99685 * 9 7 2 11 11 O 1.42895 * 109.47538 * 59.99650 * 9 7 2 12 12 C 1.53005 * 109.47202 * 180.02562 * 9 7 2 13 13 N 1.46895 * 109.47059 * 173.36304 * 12 9 7 14 14 C 1.46856 * 111.00081 * 76.63894 * 13 12 9 15 15 C 1.53039 * 109.52230 * 185.83647 * 14 13 12 16 16 C 1.53114 * 109.28179 * 300.82129 * 15 14 13 17 17 C 1.53123 * 109.16230 * 57.65501 * 16 15 14 18 18 C 1.46853 * 111.00138 * 200.84717 * 13 12 9 19 19 H 1.09000 * 109.45861 * 294.17883 * 18 13 12 20 20 C 1.53001 * 109.45922 * 54.14579 * 18 13 12 21 21 H 1.09003 * 109.82023 * 301.37442 * 20 18 13 22 22 C 1.54381 * 109.83022 * 180.39937 * 20 18 13 23 23 C 1.55302 * 102.25321 * 219.13021 * 22 20 18 24 24 C 1.54950 * 100.94339 * 34.12974 * 23 22 20 25 25 O 1.43236 * 109.82975 * 62.26645 * 20 18 13 26 26 H 0.96995 * 120.00422 * 0.02562 * 1 2 3 27 27 H 0.96705 * 113.99370 * 60.00228 * 11 9 7 28 28 H 1.08997 * 109.47101 * 293.36309 * 12 9 7 29 29 H 1.08994 * 109.47093 * 53.36147 * 12 9 7 30 30 H 1.08995 * 109.46281 * 305.85240 * 14 13 12 31 31 H 1.08998 * 109.45826 * 65.82407 * 14 13 12 32 32 H 1.09007 * 109.50333 * 60.76394 * 15 14 13 33 33 H 1.08997 * 109.50258 * 180.83830 * 15 14 13 34 34 H 1.08997 * 109.52422 * 177.56220 * 16 15 14 35 35 H 1.08998 * 109.52263 * 297.75279 * 16 15 14 36 36 H 1.08997 * 109.50091 * 62.28418 * 17 16 15 37 37 H 1.09000 * 109.50367 * 182.37025 * 17 16 15 38 38 H 1.09004 * 110.84548 * 337.31664 * 22 20 18 39 39 H 1.09001 * 110.84862 * 100.93345 * 22 20 18 40 40 H 1.09001 * 111.12346 * 276.21480 * 23 22 20 41 41 H 1.09000 * 111.16437 * 152.06345 * 23 22 20 42 42 H 1.08991 * 110.30863 * 204.64089 * 24 23 22 43 43 H 1.09005 * 110.39204 * 82.51316 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5568 0.8903 11 8 0.4299 -2.5751 -1.1664 12 6 2.2453 -3.6621 0.0018 13 7 1.5177 -4.9281 0.1619 14 6 0.8671 -5.3236 -1.0938 15 6 0.0028 -6.5636 -0.8536 16 6 0.8852 -7.7018 -0.3337 17 6 1.5887 -7.2471 0.9481 18 6 2.4070 -5.9874 0.6557 19 1 3.1601 -6.2107 -0.0999 20 6 3.0958 -5.5177 1.9386 21 1 3.6617 -4.6070 1.7421 22 6 4.0408 -6.6216 2.4599 23 6 3.8302 -6.5373 3.9962 24 6 2.3305 -6.1540 4.0670 25 8 2.1160 -5.2716 2.9540 26 1 -0.4850 0.8400 -0.0004 27 1 0.9223 -2.5300 -1.9974 28 1 2.7919 -3.6738 -0.9411 29 1 2.9468 -3.5393 0.8269 30 1 0.2394 -4.5070 -1.4505 31 1 1.6275 -5.5502 -1.8411 32 1 -0.7665 -6.3337 -0.1164 33 1 -0.4682 -6.8656 -1.7890 34 1 0.2668 -8.5736 -0.1202 35 1 1.6303 -7.9582 -1.0867 36 1 0.8443 -7.0280 1.7136 37 1 2.2508 -8.0382 1.3001 38 1 3.7422 -7.5988 2.0805 39 1 5.0758 -6.4020 2.1975 40 1 4.4553 -5.7604 4.4364 41 1 4.0121 -7.5010 4.4719 42 1 2.1150 -5.6406 5.0039 43 1 1.7064 -7.0426 3.9709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656507044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:25 Heat of formation + Delta-G solvation = -118.164617 kcal Electronic energy + Delta-G solvation = -22460.075897 eV Core-core repulsion = 19310.936737 eV Total energy + Delta-G solvation = -3149.139160 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19646 -39.18260 -37.44252 -34.34875 -34.16719 -33.22573 -32.28379 -30.15985 -28.92051 -26.81488 -24.63474 -24.28870 -22.63503 -22.12334 -21.42552 -20.44515 -18.98439 -17.64858 -17.06886 -16.71558 -16.54884 -16.40212 -16.04163 -15.51727 -15.27500 -14.96753 -14.59029 -14.36188 -14.27689 -14.03668 -13.72894 -13.35125 -12.96984 -12.84314 -12.66895 -12.57162 -12.50180 -12.24248 -12.10605 -11.96209 -11.91501 -11.71898 -11.53096 -11.33138 -11.13880 -11.02234 -10.68269 -10.16629 -9.93761 -8.91468 -8.10663 -6.37402 1.39332 1.42025 1.50027 2.38998 2.89269 3.14002 3.29580 3.61842 3.73027 3.95137 4.01614 4.06929 4.13046 4.16843 4.34313 4.39279 4.41918 4.47111 4.50252 4.66206 4.69406 4.75738 4.83209 4.89703 4.94125 4.98489 5.01700 5.07644 5.10169 5.13198 5.21213 5.26403 5.38121 5.45037 5.54761 5.64206 5.81177 6.06928 6.25601 6.41828 6.55340 6.76590 7.34591 7.56824 8.93484 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019028 B = 0.006143 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.157032 B = 4557.123297 C = 5574.705185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.025 3.975 3 Si 0.961 3.039 4 H -0.284 1.284 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.587 4.587 8 H 0.057 0.943 9 C 0.245 3.755 10 H 0.013 0.987 11 O -0.569 6.569 12 C 0.049 3.951 13 N -0.533 5.533 14 C 0.043 3.957 15 C -0.112 4.112 16 C -0.114 4.114 17 C -0.102 4.102 18 C 0.072 3.928 19 H 0.044 0.956 20 C 0.078 3.922 21 H 0.059 0.941 22 C -0.145 4.145 23 C -0.145 4.145 24 C 0.036 3.964 25 O -0.390 6.390 26 H 0.261 0.739 27 H 0.349 0.651 28 H 0.021 0.979 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.023 0.977 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.145 -17.890 3.288 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.785 3.215 4 H -0.209 1.209 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.626 4.626 8 H 0.075 0.925 9 C 0.188 3.812 10 H 0.031 0.969 11 O -0.373 6.373 12 C -0.079 4.079 13 N -0.258 5.258 14 C -0.084 4.084 15 C -0.150 4.150 16 C -0.151 4.151 17 C -0.140 4.140 18 C -0.036 4.036 19 H 0.062 0.938 20 C 0.020 3.980 21 H 0.076 0.924 22 C -0.183 4.183 23 C -0.182 4.182 24 C -0.040 4.040 25 O -0.310 6.310 26 H 0.070 0.930 27 H 0.194 0.806 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.970 -17.620 4.084 19.384 hybrid contribution 1.284 1.230 -0.917 2.001 sum 8.254 -16.390 3.168 18.623 Atomic orbital electron populations 1.70230 1.07730 1.27338 1.48375 1.25917 0.95484 1.02930 0.93372 0.85604 0.78367 0.78429 0.79101 1.20905 1.19448 1.18994 1.22002 0.93382 0.92864 1.54302 0.92470 1.19064 0.87752 0.90089 0.84319 0.96891 1.86511 1.39314 1.95681 1.15781 1.22704 0.96180 0.90366 0.98681 1.61807 1.31804 1.02249 1.29899 1.22425 0.97484 0.99022 0.89469 1.21546 0.97926 0.94366 1.01127 1.21567 0.98887 0.97591 0.97060 1.21577 0.99118 0.95092 0.98175 1.22078 0.93832 0.92573 0.95134 0.93835 1.22958 0.88915 0.97867 0.88269 0.92377 1.23260 1.00028 0.99112 0.95881 1.23226 0.95477 1.03769 0.95756 1.23588 0.96599 0.93991 0.89808 1.88611 1.53916 1.59862 1.28588 0.93043 0.80616 0.96069 0.91347 0.90078 0.95893 0.93309 0.90507 0.90258 0.91547 0.92619 0.89399 0.88457 0.89014 0.90672 0.87352 0.90090 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.14 12.84 21.45 0.28 -55.87 16 2 C 0.03 1.47 5.40 84.66 0.46 1.93 16 3 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.59 -33.85 8.76 25.60 0.22 -33.63 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.25 13.49 3.04 29.85 0.09 13.58 16 10 H 0.01 0.85 8.14 -2.38 -0.02 0.83 16 11 O -0.57 -30.75 9.88 -148.98 -1.47 -32.22 16 12 C 0.05 2.16 4.58 86.31 0.40 2.56 16 13 N -0.53 -20.85 4.33 -871.09 -3.77 -24.62 16 14 C 0.04 1.56 5.21 86.32 0.45 2.01 16 15 C -0.11 -3.27 6.09 30.65 0.19 -3.09 16 16 C -0.11 -2.63 6.00 30.67 0.18 -2.45 16 17 C -0.10 -2.57 4.93 30.65 0.15 -2.42 16 18 C 0.07 2.21 1.75 44.94 0.08 2.29 16 19 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 20 C 0.08 2.33 2.86 31.06 0.09 2.42 16 21 H 0.06 2.00 5.86 -2.39 -0.01 1.99 16 22 C -0.15 -2.83 6.35 31.85 0.20 -2.63 16 23 C -0.14 -2.56 7.16 32.05 0.23 -2.34 16 24 C 0.04 0.87 7.75 72.65 0.56 1.44 16 25 O -0.39 -13.64 10.18 -148.98 -1.52 -15.16 16 26 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 27 H 0.35 16.77 9.02 -74.05 -0.67 16.10 16 28 H 0.02 0.91 7.99 -2.39 -0.02 0.89 16 29 H 0.07 3.07 5.21 -2.39 -0.01 3.05 16 30 H 0.08 3.40 5.24 -2.39 -0.01 3.39 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.65 7.62 -2.39 -0.02 1.63 16 37 H 0.09 1.67 6.14 -2.39 -0.01 1.65 16 38 H 0.10 1.57 5.80 -2.38 -0.01 1.55 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -70.81 324.59 -0.84 -71.64 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.32 Total: 29.78 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 3.30 Total: -20.33 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -3.50 Total: -80.49 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -2.99 Total: -47.38 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.81 -0.84 -71.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656507044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.523 kcal (2) G-P(sol) polarization free energy of solvation -70.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds