Wall clock time and date at job start Mon Mar 30 2020 01:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99667 * 2 1 4 4 H 1.48499 * 109.47375 * 269.99816 * 3 2 1 5 5 H 1.48498 * 109.47123 * 30.00228 * 3 2 1 6 6 H 1.48502 * 109.46956 * 149.99693 * 3 2 1 7 7 C 1.37877 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99425 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00361 * 180.02562 * 7 2 1 10 10 O 1.42895 * 109.47280 * 179.97438 * 9 7 2 11 11 C 1.42894 * 114.00030 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47275 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46709 * 64.99953 * 12 11 10 14 14 C 1.46900 * 110.99608 * 182.28358 * 13 12 11 15 15 C 1.52996 * 112.85277 * 283.29908 * 14 13 12 16 16 H 1.08998 * 110.55341 * 186.79200 * 15 14 13 17 17 C 1.54994 * 110.61606 * 309.67009 * 15 14 13 18 18 C 1.54814 * 102.09278 * 155.52309 * 17 15 14 19 19 C 1.54094 * 104.18946 * 339.11886 * 18 17 15 20 20 O 1.43747 * 107.29083 * 357.97053 * 19 18 17 21 21 C 1.53780 * 113.61515 * 151.99156 * 14 13 12 22 22 C 1.53774 * 87.08469 * 220.02089 * 21 14 13 23 23 C 1.53783 * 87.08298 * 25.43040 * 22 21 14 24 24 H 0.96996 * 119.99797 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46687 * 59.99762 * 9 7 2 26 26 H 1.08995 * 109.47393 * 300.00309 * 9 7 2 27 27 H 1.09002 * 109.47371 * 59.99933 * 11 10 9 28 28 H 1.09007 * 109.47544 * 299.99800 * 11 10 9 29 29 H 1.09003 * 109.47390 * 184.99595 * 12 11 10 30 30 H 1.08995 * 109.46868 * 305.00007 * 12 11 10 31 31 H 1.00898 * 111.00232 * 306.23227 * 13 12 11 32 32 H 1.09011 * 110.90670 * 273.72017 * 17 15 14 33 33 H 1.08994 * 110.91081 * 37.32239 * 17 15 14 34 34 H 1.09000 * 110.48731 * 97.79726 * 18 17 15 35 35 H 1.09001 * 110.48595 * 220.43660 * 18 17 15 36 36 H 1.08997 * 109.87928 * 117.39075 * 19 18 17 37 37 H 1.08995 * 109.87986 * 238.40015 * 19 18 17 38 38 H 1.09009 * 113.61352 * 334.56615 * 21 14 13 39 39 H 1.09006 * 113.61464 * 105.46855 * 21 14 13 40 40 H 1.09000 * 113.61556 * 270.88514 * 22 21 14 41 41 H 1.09001 * 113.61757 * 139.98311 * 22 21 14 42 42 H 1.08998 * 113.61717 * 220.02243 * 23 22 21 43 43 H 1.09000 * 113.61164 * 89.11878 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0047 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9880 -2.5412 -0.0001 11 6 5.4125 -2.6540 0.0010 12 6 5.8071 -4.1322 0.0015 13 7 5.3688 -4.7563 -1.2541 14 6 5.6833 -6.1912 -1.2665 15 6 7.1624 -6.4730 -1.5377 16 1 7.3324 -7.5429 -1.6576 17 6 7.6443 -5.6999 -2.7916 18 6 9.1662 -5.5805 -2.5340 19 6 9.3085 -5.7792 -1.0125 20 8 7.9843 -5.9401 -0.4770 21 6 4.7262 -7.0241 -2.1355 22 6 4.7797 -8.0931 -1.0314 23 6 5.1226 -6.9553 -0.0554 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6807 0.8906 26 1 3.8753 -0.6795 -0.8894 27 1 5.8146 -2.1707 0.8915 28 1 5.8161 -2.1701 -0.8885 29 1 6.8899 -4.2193 0.0918 30 1 5.3307 -4.6352 0.8429 31 1 4.3843 -4.6006 -1.4109 32 1 7.4470 -6.2698 -3.6997 33 1 7.1802 -4.7150 -2.8436 34 1 9.7065 -6.3591 -3.0726 35 1 9.5262 -4.5938 -2.8253 36 1 9.9015 -6.6708 -0.8090 37 1 9.7869 -4.9066 -0.5680 38 1 3.7420 -6.5717 -2.2579 39 1 5.1643 -7.3489 -3.0794 40 1 5.5861 -8.8149 -1.1611 41 1 3.8169 -8.5638 -0.8324 42 1 5.8806 -7.2245 0.6801 43 1 4.2468 -6.4841 0.3909 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660641361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:34 Heat of formation + Delta-G solvation = -73.901797 kcal Electronic energy + Delta-G solvation = -21550.487042 eV Core-core repulsion = 18403.267261 eV Total energy + Delta-G solvation = -3147.219781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.49540 -38.18119 -36.94908 -33.76199 -32.49479 -32.13915 -29.64983 -28.52183 -27.04231 -25.73865 -24.09085 -22.22443 -21.84296 -21.41976 -21.10546 -18.85617 -16.91504 -16.79696 -16.15173 -15.71700 -15.52475 -15.14532 -14.94591 -14.53196 -14.39540 -13.89218 -13.66470 -13.35839 -12.78439 -12.53071 -12.48594 -12.22163 -11.85157 -11.76431 -11.58633 -11.52550 -11.38889 -11.04622 -10.93793 -10.75786 -10.63548 -10.53046 -10.35466 -10.15428 -9.84574 -9.59526 -9.15824 -8.81245 -8.43355 -8.04185 -6.10321 -4.09038 3.26441 3.33210 3.35401 3.64313 4.28361 4.37281 4.39968 4.56862 4.66428 4.70046 4.80715 4.82994 4.90672 4.97953 5.16252 5.21583 5.27115 5.48064 5.54426 5.59271 5.67553 5.70147 5.73345 5.75607 5.82865 5.84916 5.89741 6.00539 6.03951 6.10302 6.26862 6.31089 6.36869 6.46782 6.66161 6.84445 7.03852 7.31917 7.61917 7.76155 8.05629 8.69451 9.00522 9.49513 11.02763 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024568 B = 0.004205 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.440791 B = 6656.971326 C = 7324.816577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.171 3.829 10 O -0.384 6.384 11 C 0.057 3.943 12 C 0.067 3.933 13 N -0.669 5.669 14 C 0.102 3.898 15 C 0.110 3.890 16 H 0.068 0.932 17 C -0.143 4.143 18 C -0.157 4.157 19 C 0.047 3.953 20 O -0.367 6.367 21 C -0.129 4.129 22 C -0.142 4.142 23 C -0.165 4.165 24 H 0.266 0.734 25 H 0.001 0.999 26 H -0.002 1.002 27 H 0.039 0.961 28 H 0.044 0.956 29 H 0.093 0.907 30 H 0.034 0.966 31 H 0.356 0.644 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.017 -14.735 -4.614 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.099 0.901 9 C 0.096 3.904 10 O -0.304 6.304 11 C -0.021 4.021 12 C -0.062 4.062 13 N -0.301 5.301 14 C 0.010 3.990 15 C 0.052 3.948 16 H 0.086 0.914 17 C -0.181 4.181 18 C -0.195 4.195 19 C -0.030 4.030 20 O -0.286 6.286 21 C -0.166 4.166 22 C -0.180 4.180 23 C -0.204 4.204 24 H 0.076 0.924 25 H 0.019 0.981 26 H 0.016 0.984 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.111 0.889 30 H 0.053 0.947 31 H 0.176 0.824 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 18.221 -14.509 -4.741 23.769 hybrid contribution 0.030 0.811 0.445 0.926 sum 18.251 -13.697 -4.296 23.220 Atomic orbital electron populations 1.69878 1.06066 1.27062 1.50511 1.24764 0.94790 0.98762 0.94643 0.86845 0.80345 0.83751 0.78776 1.19916 1.20827 1.19126 1.20896 0.88354 0.95235 1.51077 0.90073 1.20556 0.96003 0.79624 0.94257 1.87839 1.17955 1.29522 1.95062 1.22448 0.84503 0.95910 0.99247 1.22039 1.01007 0.92754 0.90391 1.60266 1.24759 1.09730 1.35386 1.22134 0.92588 0.88181 0.96134 1.22772 0.89106 0.96235 0.86665 0.91445 1.23086 0.94072 1.03443 0.97453 1.22931 0.97583 1.02632 0.96317 1.23082 0.85657 1.00865 0.93386 1.88883 1.19624 1.84864 1.35221 1.23096 0.99720 0.96390 0.97435 1.22782 1.01763 0.96435 0.96990 1.23540 1.01555 0.97681 0.97625 0.92401 0.98147 0.98391 0.94279 0.93745 0.88899 0.94735 0.82373 0.91013 0.88083 0.91303 0.90628 0.92953 0.90122 0.89024 0.91122 0.90420 0.91224 0.91192 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -15.53 9.99 -34.44 -0.34 -15.87 16 8 H 0.08 2.65 8.06 -52.48 -0.42 2.23 16 9 C 0.17 4.42 4.76 36.00 0.17 4.59 16 10 O -0.38 -9.00 9.81 -35.23 -0.35 -9.35 16 11 C 0.06 1.05 6.27 37.16 0.23 1.28 16 12 C 0.07 1.06 5.59 -3.82 -0.02 1.04 16 13 N -0.67 -9.86 5.40 -99.14 -0.54 -10.40 16 14 C 0.10 1.24 0.68 -130.79 -0.09 1.15 16 15 C 0.11 1.22 2.74 -25.68 -0.07 1.15 16 16 H 0.07 0.68 7.41 -51.93 -0.38 0.29 16 17 C -0.14 -1.46 6.54 -24.72 -0.16 -1.62 16 18 C -0.16 -1.34 7.01 -25.20 -0.18 -1.52 16 19 C 0.05 0.45 7.70 37.73 0.29 0.74 16 20 O -0.37 -4.52 8.74 -35.23 -0.31 -4.83 16 21 C -0.13 -1.37 7.33 -25.92 -0.19 -1.56 16 22 C -0.14 -1.42 7.74 -25.92 -0.20 -1.62 16 23 C -0.16 -2.02 6.09 -25.92 -0.16 -2.17 16 24 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.00 0.02 7.20 -51.93 -0.37 -0.35 16 26 H 0.00 -0.04 7.57 -51.93 -0.39 -0.43 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.41 5.90 -51.93 -0.31 1.10 16 30 H 0.03 0.58 6.87 -51.93 -0.36 0.22 16 31 H 0.36 5.87 7.84 -39.29 -0.31 5.56 16 32 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.10 1.25 7.14 -51.93 -0.37 0.88 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.05 7.88 -51.92 -0.41 0.64 16 39 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.08 0.68 7.66 -51.93 -0.40 0.29 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 43 H 0.09 1.18 7.81 -51.93 -0.41 0.78 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -31.36 335.04 -8.37 -39.73 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.52 Total: 2.24 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -0.81 Total: -12.38 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.24 Total: -37.48 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.65 Total: -14.18 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.36 -8.37 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660641361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.172 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds