Wall clock time and date at job start Mon Mar 30 2020 01:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99667 * 2 1 4 4 H 1.48499 * 109.47375 * 269.99816 * 3 2 1 5 5 H 1.48498 * 109.47123 * 30.00228 * 3 2 1 6 6 H 1.48502 * 109.46956 * 149.99693 * 3 2 1 7 7 C 1.37877 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99425 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00361 * 180.02562 * 7 2 1 10 10 O 1.42895 * 109.47280 * 179.97438 * 9 7 2 11 11 C 1.42894 * 114.00030 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47275 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46709 * 64.99953 * 12 11 10 14 14 C 1.46900 * 110.99608 * 182.28358 * 13 12 11 15 15 C 1.52996 * 112.85277 * 283.29908 * 14 13 12 16 16 H 1.08998 * 110.55341 * 186.79200 * 15 14 13 17 17 C 1.54994 * 110.61606 * 309.67009 * 15 14 13 18 18 C 1.54814 * 102.09278 * 155.52309 * 17 15 14 19 19 C 1.54094 * 104.18946 * 339.11886 * 18 17 15 20 20 O 1.43747 * 107.29083 * 357.97053 * 19 18 17 21 21 C 1.53780 * 113.61515 * 151.99156 * 14 13 12 22 22 C 1.53774 * 87.08469 * 220.02089 * 21 14 13 23 23 C 1.53783 * 87.08298 * 25.43040 * 22 21 14 24 24 H 0.96996 * 119.99797 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46687 * 59.99762 * 9 7 2 26 26 H 1.08995 * 109.47393 * 300.00309 * 9 7 2 27 27 H 1.09002 * 109.47371 * 59.99933 * 11 10 9 28 28 H 1.09007 * 109.47544 * 299.99800 * 11 10 9 29 29 H 1.09003 * 109.47390 * 184.99595 * 12 11 10 30 30 H 1.08995 * 109.46868 * 305.00007 * 12 11 10 31 31 H 1.00898 * 111.00232 * 306.23227 * 13 12 11 32 32 H 1.09011 * 110.90670 * 273.72017 * 17 15 14 33 33 H 1.08994 * 110.91081 * 37.32239 * 17 15 14 34 34 H 1.09000 * 110.48731 * 97.79726 * 18 17 15 35 35 H 1.09001 * 110.48595 * 220.43660 * 18 17 15 36 36 H 1.08997 * 109.87928 * 117.39075 * 19 18 17 37 37 H 1.08995 * 109.87986 * 238.40015 * 19 18 17 38 38 H 1.09009 * 113.61352 * 334.56615 * 21 14 13 39 39 H 1.09006 * 113.61464 * 105.46855 * 21 14 13 40 40 H 1.09000 * 113.61556 * 270.88514 * 22 21 14 41 41 H 1.09001 * 113.61757 * 139.98311 * 22 21 14 42 42 H 1.08998 * 113.61717 * 220.02243 * 23 22 21 43 43 H 1.09000 * 113.61164 * 89.11878 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0047 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 8 3.9880 -2.5412 -0.0001 11 6 5.4125 -2.6540 0.0010 12 6 5.8071 -4.1322 0.0015 13 7 5.3688 -4.7563 -1.2541 14 6 5.6833 -6.1912 -1.2665 15 6 7.1624 -6.4730 -1.5377 16 1 7.3324 -7.5429 -1.6576 17 6 7.6443 -5.6999 -2.7916 18 6 9.1662 -5.5805 -2.5340 19 6 9.3085 -5.7792 -1.0125 20 8 7.9843 -5.9401 -0.4770 21 6 4.7262 -7.0241 -2.1355 22 6 4.7797 -8.0931 -1.0314 23 6 5.1226 -6.9553 -0.0554 24 1 -0.4850 0.8400 0.0004 25 1 3.8745 -0.6807 0.8906 26 1 3.8753 -0.6795 -0.8894 27 1 5.8146 -2.1707 0.8915 28 1 5.8161 -2.1701 -0.8885 29 1 6.8899 -4.2193 0.0918 30 1 5.3307 -4.6352 0.8429 31 1 4.3843 -4.6006 -1.4109 32 1 7.4470 -6.2698 -3.6997 33 1 7.1802 -4.7150 -2.8436 34 1 9.7065 -6.3591 -3.0726 35 1 9.5262 -4.5938 -2.8253 36 1 9.9015 -6.6708 -0.8090 37 1 9.7869 -4.9066 -0.5680 38 1 3.7420 -6.5717 -2.2579 39 1 5.1643 -7.3489 -3.0794 40 1 5.5861 -8.8149 -1.1611 41 1 3.8169 -8.5638 -0.8324 42 1 5.8806 -7.2245 0.6801 43 1 4.2468 -6.4841 0.3909 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660641361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:34 Heat of formation + Delta-G solvation = -95.362770 kcal Electronic energy + Delta-G solvation = -21551.417659 eV Core-core repulsion = 18403.267261 eV Total energy + Delta-G solvation = -3148.150398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.40809 -39.10911 -38.63586 -35.27266 -34.52931 -32.92074 -30.86499 -30.01960 -28.62822 -26.70115 -25.00627 -24.00055 -23.13109 -22.54444 -22.04005 -19.80273 -19.06032 -17.79471 -17.39609 -17.14388 -16.67738 -16.41764 -16.28272 -15.93621 -15.56579 -15.15471 -14.93274 -14.55727 -14.34241 -13.80516 -13.71777 -13.45050 -13.39943 -13.01719 -12.66283 -12.60622 -12.43808 -12.41607 -12.18432 -12.07431 -11.83867 -11.81971 -11.49762 -11.36660 -11.22621 -11.18146 -10.92716 -10.44416 -10.36137 -9.21242 -8.38384 -6.46161 1.32627 1.35457 1.46396 2.28575 2.81872 2.94361 3.08648 3.22567 3.53766 3.66570 3.79102 3.93027 4.01785 4.13632 4.18411 4.29734 4.36083 4.39508 4.49145 4.52254 4.59307 4.68189 4.75548 4.78740 4.88816 4.89736 4.91627 4.97722 5.01521 5.04327 5.06215 5.10340 5.21522 5.24139 5.42664 5.44760 5.47500 5.92554 6.05713 6.16390 6.46954 6.57413 6.73117 7.18436 8.78702 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024568 B = 0.004205 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.440791 B = 6656.971326 C = 7324.816577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.955 3.045 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.544 4.544 8 H 0.031 0.969 9 C 0.182 3.818 10 O -0.405 6.405 11 C 0.052 3.948 12 C 0.080 3.920 13 N -0.671 5.671 14 C 0.096 3.904 15 C 0.111 3.889 16 H 0.085 0.915 17 C -0.142 4.142 18 C -0.150 4.150 19 C 0.041 3.959 20 O -0.392 6.392 21 C -0.126 4.126 22 C -0.128 4.128 23 C -0.170 4.170 24 H 0.273 0.727 25 H 0.008 0.992 26 H 0.010 0.990 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.106 0.894 30 H 0.020 0.980 31 H 0.341 0.659 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.667 -14.582 -5.425 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.582 4.582 8 H 0.049 0.951 9 C 0.106 3.894 10 O -0.324 6.324 11 C -0.024 4.024 12 C -0.049 4.049 13 N -0.301 5.301 14 C 0.004 3.996 15 C 0.053 3.947 16 H 0.103 0.897 17 C -0.180 4.180 18 C -0.188 4.188 19 C -0.036 4.036 20 O -0.312 6.312 21 C -0.164 4.164 22 C -0.166 4.166 23 C -0.209 4.209 24 H 0.082 0.918 25 H 0.026 0.974 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.124 0.876 30 H 0.038 0.962 31 H 0.160 0.840 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 20.895 -14.386 -5.553 25.969 hybrid contribution -0.827 0.653 0.713 1.273 sum 20.068 -13.733 -4.840 24.794 Atomic orbital electron populations 1.70028 1.08211 1.28782 1.51087 1.25812 0.95776 1.03328 0.93423 0.85618 0.79357 0.77611 0.79817 1.18309 1.19736 1.17176 1.21146 0.90861 0.93853 1.52348 0.95107 1.20280 0.93277 0.81004 0.94853 1.87814 1.21150 1.28259 1.95221 1.22715 0.81757 0.97870 1.00104 1.21910 1.01343 0.91123 0.90522 1.60325 1.23538 1.11726 1.34510 1.22373 0.94116 0.86578 0.96526 1.22837 0.87847 0.97232 0.86782 0.89709 1.23039 0.95094 1.02172 0.97705 1.22916 0.96477 1.03555 0.95849 1.23262 0.84597 1.01778 0.93950 1.88845 1.21002 1.85148 1.36195 1.23070 0.98765 0.96132 0.98408 1.22766 1.02700 0.95924 0.95208 1.23486 1.00502 0.98998 0.97955 0.91774 0.97383 0.97230 0.93118 0.92963 0.87640 0.96196 0.84004 0.89487 0.90546 0.89277 0.90428 0.91455 0.89881 0.90394 0.89174 0.88301 0.90853 0.91578 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.80 13.96 21.45 0.30 -59.50 16 2 C 0.01 0.88 5.47 84.65 0.46 1.34 16 3 Si 0.95 44.06 27.47 68.60 1.88 45.94 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 7 C -0.54 -33.68 9.99 25.60 0.26 -33.43 16 8 H 0.03 2.14 8.06 -2.91 -0.02 2.11 16 9 C 0.18 9.37 4.76 71.24 0.34 9.71 16 10 O -0.40 -19.28 9.81 -148.98 -1.46 -20.74 16 11 C 0.05 1.92 6.27 71.98 0.45 2.37 16 12 C 0.08 2.54 5.59 86.30 0.48 3.02 16 13 N -0.67 -19.97 5.40 -467.56 -2.52 -22.50 16 14 C 0.10 2.28 0.68 4.05 0.00 2.28 16 15 C 0.11 2.25 2.74 31.28 0.09 2.33 16 16 H 0.09 1.44 7.41 -2.39 -0.02 1.43 16 17 C -0.14 -2.61 6.54 31.90 0.21 -2.40 16 18 C -0.15 -2.18 7.01 31.58 0.22 -1.96 16 19 C 0.04 0.68 7.70 72.35 0.56 1.23 16 20 O -0.39 -9.04 8.74 -148.98 -1.30 -10.34 16 21 C -0.13 -2.57 7.33 31.12 0.23 -2.35 16 22 C -0.13 -2.40 7.74 31.12 0.24 -2.16 16 23 C -0.17 -4.18 6.09 31.12 0.19 -3.99 16 24 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 25 H 0.01 0.42 7.20 -2.38 -0.02 0.40 16 26 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.11 3.12 5.90 -2.39 -0.01 3.11 16 30 H 0.02 0.69 6.87 -2.39 -0.02 0.67 16 31 H 0.34 11.75 7.84 -89.70 -0.70 11.05 16 32 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.08 1.80 7.14 -2.39 -0.02 1.79 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.81 7.88 -2.38 -0.02 1.79 16 39 H 0.09 1.49 8.10 -2.38 -0.02 1.47 16 40 H 0.10 1.46 7.66 -2.39 -0.02 1.44 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 43 H 0.06 1.77 7.81 -2.39 -0.02 1.75 16 Total: -1.00 -69.37 335.04 0.84 -68.53 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.22 Total: 22.61 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 3.73 Total: -23.99 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -2.22 Total: -82.00 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -2.76 Total: -31.08 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Total: -69.37 0.84 -68.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660641361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.837 kcal (2) G-P(sol) polarization free energy of solvation -69.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds