Wall clock time and date at job start Mon Mar 30 2020 01:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99795 * 2 1 4 4 H 1.48499 * 109.47250 * 270.00393 * 3 2 1 5 5 H 1.48497 * 109.47004 * 30.00116 * 3 2 1 6 6 H 1.48504 * 109.47013 * 150.00234 * 3 2 1 7 7 C 1.37877 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99490 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00215 * 179.97438 * 7 2 1 10 10 O 1.42901 * 109.47574 * 179.97438 * 9 7 2 11 11 C 1.42893 * 114.00108 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46888 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46850 * 65.00347 * 12 11 10 14 14 C 1.46906 * 110.99931 * 174.80084 * 13 12 11 15 15 C 1.52997 * 112.85044 * 289.76528 * 14 13 12 16 16 H 1.09005 * 110.55138 * 75.36825 * 15 14 13 17 17 C 1.55000 * 110.61996 * 312.49021 * 15 14 13 18 18 C 1.54988 * 102.01031 * 204.59560 * 17 15 14 19 19 C 1.54101 * 104.25278 * 20.66684 * 18 17 15 20 20 O 1.43747 * 107.29641 * 2.16414 * 19 18 17 21 21 C 1.53782 * 113.61338 * 158.45896 * 14 13 12 22 22 C 1.53782 * 87.08124 * 220.02097 * 21 14 13 23 23 C 1.53782 * 87.08200 * 25.43318 * 22 21 14 24 24 H 0.96996 * 119.99843 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47210 * 59.99846 * 9 7 2 26 26 H 1.09005 * 109.47267 * 300.00537 * 9 7 2 27 27 H 1.09007 * 109.47038 * 60.00313 * 11 10 9 28 28 H 1.08995 * 109.47394 * 300.00246 * 11 10 9 29 29 H 1.08996 * 109.47473 * 305.00483 * 12 11 10 30 30 H 1.09008 * 109.47217 * 184.99746 * 12 11 10 31 31 H 1.00893 * 111.00213 * 298.75593 * 13 12 11 32 32 H 1.09003 * 110.90396 * 322.67461 * 17 15 14 33 33 H 1.09000 * 110.90529 * 86.27450 * 17 15 14 34 34 H 1.08997 * 110.33974 * 262.02824 * 18 17 15 35 35 H 1.08997 * 110.56919 * 139.41672 * 18 17 15 36 36 H 1.09005 * 109.87640 * 242.73999 * 19 18 17 37 37 H 1.08996 * 109.88247 * 121.59029 * 19 18 17 38 38 H 1.09000 * 113.61014 * 334.56923 * 21 14 13 39 39 H 1.09000 * 113.61191 * 105.47371 * 21 14 13 40 40 H 1.09000 * 113.61258 * 270.88394 * 22 21 14 41 41 H 1.08995 * 113.61515 * 139.97661 * 22 21 14 42 42 H 1.08993 * 113.61459 * 220.02297 * 23 22 21 43 43 H 1.09001 * 113.61413 * 89.11566 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 8 3.9880 -2.5413 -0.0010 11 6 5.4125 -2.6540 -0.0021 12 6 5.8070 -4.1323 -0.0012 13 7 5.3668 -4.7572 -1.2556 14 6 5.8361 -6.1465 -1.3447 15 6 7.3484 -6.2506 -1.5517 16 1 7.8773 -6.0374 -0.6227 17 6 7.8127 -5.2909 -2.6768 18 6 9.1200 -5.9690 -3.1600 19 6 8.9875 -7.4293 -2.6859 20 8 7.7044 -7.5578 -2.0509 21 6 5.0182 -7.0118 -2.3180 22 6 5.1350 -8.1450 -1.2849 23 6 5.3047 -7.0495 -0.2190 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6803 0.8889 26 1 3.8746 -0.6799 -0.8911 27 1 5.8160 -2.1701 0.8875 28 1 5.8146 -2.1708 -0.8925 29 1 5.3319 -4.6347 0.8413 30 1 6.8900 -4.2193 0.0875 31 1 4.3637 -4.7076 -1.3518 32 1 7.0775 -5.2492 -3.4804 33 1 8.0114 -4.2949 -2.2810 34 1 9.9858 -5.4949 -2.6979 35 1 9.1947 -5.9260 -4.2465 36 1 9.7788 -7.6606 -1.9728 37 1 9.0473 -8.1033 -3.5404 38 1 3.9976 -6.6581 -2.4646 39 1 5.5337 -7.2206 -3.2553 40 1 6.0205 -8.7666 -1.4170 41 1 4.2209 -8.7275 -1.1706 42 1 6.0515 -7.2888 0.5379 43 1 4.3624 -6.7062 0.2081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660641362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:36 Heat of formation + Delta-G solvation = -73.563000 kcal Electronic energy + Delta-G solvation = -21376.450635 eV Core-core repulsion = 18229.245546 eV Total energy + Delta-G solvation = -3147.205089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57279 -38.09660 -36.97212 -33.97636 -32.57165 -32.05782 -29.63905 -28.61661 -27.14294 -25.74284 -24.09292 -22.26371 -21.84909 -21.50263 -21.08665 -18.86689 -16.89551 -16.77710 -16.25117 -15.96681 -15.50588 -15.32480 -14.67810 -14.55184 -14.46811 -13.96501 -13.75982 -13.40364 -12.97324 -12.59154 -12.38506 -12.22961 -11.81149 -11.78737 -11.68635 -11.56736 -11.36507 -10.97731 -10.94381 -10.82652 -10.67469 -10.55122 -10.31118 -10.17117 -9.86929 -9.70544 -9.18952 -8.85047 -8.47106 -8.16895 -6.12129 -4.11138 3.24743 3.31634 3.33033 3.54362 4.24847 4.35230 4.42232 4.56527 4.66512 4.68303 4.72318 4.85474 4.91426 4.94874 5.16981 5.19554 5.31075 5.43052 5.48446 5.52235 5.58027 5.67031 5.72266 5.80269 5.83073 5.90398 5.92241 5.98535 6.03578 6.09953 6.15484 6.20287 6.25288 6.50564 6.61467 6.77431 7.00263 7.21026 7.58215 7.62687 8.01258 8.66045 8.98659 9.47301 11.00913 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029843 B = 0.003786 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.015758 B = 7393.010008 C = 7924.148612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.082 0.918 9 C 0.171 3.829 10 O -0.383 6.383 11 C 0.059 3.941 12 C 0.066 3.934 13 N -0.668 5.668 14 C 0.099 3.901 15 C 0.109 3.891 16 H 0.066 0.934 17 C -0.129 4.129 18 C -0.161 4.161 19 C 0.046 3.954 20 O -0.368 6.368 21 C -0.122 4.122 22 C -0.134 4.134 23 C -0.168 4.168 24 H 0.266 0.734 25 H 0.001 0.999 26 H -0.001 1.001 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.362 0.638 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.703 -13.873 -4.376 23.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.096 3.904 10 O -0.302 6.302 11 C -0.018 4.018 12 C -0.063 4.063 13 N -0.301 5.301 14 C 0.007 3.993 15 C 0.051 3.949 16 H 0.084 0.916 17 C -0.166 4.166 18 C -0.199 4.199 19 C -0.031 4.031 20 O -0.287 6.287 21 C -0.160 4.160 22 C -0.171 4.171 23 C -0.208 4.208 24 H 0.076 0.924 25 H 0.019 0.981 26 H 0.017 0.983 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.184 0.816 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 18.803 -13.825 -4.725 23.812 hybrid contribution 0.168 1.003 0.690 1.229 sum 18.972 -12.822 -4.035 23.251 Atomic orbital electron populations 1.69876 1.06067 1.27092 1.50388 1.24769 0.94799 0.98774 0.94636 0.86843 0.80315 0.83752 0.78789 1.19897 1.20816 1.19139 1.20888 0.88315 0.95267 1.51188 0.90036 1.20567 0.96058 0.79481 0.94291 1.87848 1.17648 1.29640 1.95068 1.22378 0.84889 0.95189 0.99393 1.21896 0.99283 0.94043 0.91068 1.60196 1.19825 1.14416 1.35687 1.22107 0.92812 0.87466 0.96885 1.22574 0.93288 0.82516 0.96541 0.91602 1.22931 0.95906 0.99123 0.98668 1.23026 0.99116 0.95752 1.02012 1.23118 0.86262 0.96774 0.96905 1.88871 1.35223 1.29263 1.75307 1.22945 0.99668 0.95565 0.97823 1.22736 1.01982 0.96348 0.96083 1.23622 1.01532 0.98323 0.97313 0.92370 0.98121 0.98322 0.94188 0.93500 0.94284 0.90925 0.81639 0.89913 0.89989 0.91051 0.90666 0.92788 0.90130 0.90026 0.90869 0.88942 0.92023 0.91847 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -15.39 9.99 -34.44 -0.34 -15.74 16 8 H 0.08 2.64 8.06 -52.49 -0.42 2.22 16 9 C 0.17 4.34 4.76 36.00 0.17 4.51 16 10 O -0.38 -8.70 9.94 -35.23 -0.35 -9.05 16 11 C 0.06 1.03 6.28 37.16 0.23 1.26 16 12 C 0.07 0.94 5.70 -3.82 -0.02 0.92 16 13 N -0.67 -9.36 5.85 -99.13 -0.58 -9.94 16 14 C 0.10 1.21 0.76 -130.78 -0.10 1.11 16 15 C 0.11 1.21 2.56 -25.68 -0.07 1.14 16 16 H 0.07 0.73 7.60 -51.93 -0.39 0.33 16 17 C -0.13 -1.32 6.09 -24.62 -0.15 -1.47 16 18 C -0.16 -1.31 7.02 -25.11 -0.18 -1.49 16 19 C 0.05 0.40 7.70 37.73 0.29 0.69 16 20 O -0.37 -4.08 8.14 -35.23 -0.29 -4.37 16 21 C -0.12 -1.46 7.04 -25.92 -0.18 -1.64 16 22 C -0.13 -1.52 7.58 -25.92 -0.20 -1.71 16 23 C -0.17 -2.04 6.41 -25.92 -0.17 -2.20 16 24 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.00 0.03 7.20 -51.93 -0.37 -0.35 16 26 H 0.00 -0.02 7.57 -51.93 -0.39 -0.42 16 27 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.04 0.58 7.52 -51.93 -0.39 0.19 16 30 H 0.07 0.88 7.11 -51.92 -0.37 0.51 16 31 H 0.36 5.76 8.13 -39.30 -0.32 5.44 16 32 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.00 7.94 -51.93 -0.41 0.59 16 39 H 0.07 0.87 7.76 -51.93 -0.40 0.47 16 40 H 0.09 1.07 6.47 -51.93 -0.34 0.73 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -30.78 336.55 -8.47 -39.25 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.62 Total: 1.77 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -0.80 Total: -12.61 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.19 Total: -36.83 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.64 Total: -13.42 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.78 -8.47 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660641362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.317 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds