Wall clock time and date at job start Mon Mar 30 2020 01:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99795 * 2 1 4 4 H 1.48499 * 109.47250 * 270.00393 * 3 2 1 5 5 H 1.48497 * 109.47004 * 30.00116 * 3 2 1 6 6 H 1.48504 * 109.47013 * 150.00234 * 3 2 1 7 7 C 1.37877 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99490 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00215 * 179.97438 * 7 2 1 10 10 O 1.42901 * 109.47574 * 179.97438 * 9 7 2 11 11 C 1.42893 * 114.00108 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46888 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46850 * 65.00347 * 12 11 10 14 14 C 1.46906 * 110.99931 * 174.80084 * 13 12 11 15 15 C 1.52997 * 112.85044 * 289.76528 * 14 13 12 16 16 H 1.09005 * 110.55138 * 75.36825 * 15 14 13 17 17 C 1.55000 * 110.61996 * 312.49021 * 15 14 13 18 18 C 1.54988 * 102.01031 * 204.59560 * 17 15 14 19 19 C 1.54101 * 104.25278 * 20.66684 * 18 17 15 20 20 O 1.43747 * 107.29641 * 2.16414 * 19 18 17 21 21 C 1.53782 * 113.61338 * 158.45896 * 14 13 12 22 22 C 1.53782 * 87.08124 * 220.02097 * 21 14 13 23 23 C 1.53782 * 87.08200 * 25.43318 * 22 21 14 24 24 H 0.96996 * 119.99843 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47210 * 59.99846 * 9 7 2 26 26 H 1.09005 * 109.47267 * 300.00537 * 9 7 2 27 27 H 1.09007 * 109.47038 * 60.00313 * 11 10 9 28 28 H 1.08995 * 109.47394 * 300.00246 * 11 10 9 29 29 H 1.08996 * 109.47473 * 305.00483 * 12 11 10 30 30 H 1.09008 * 109.47217 * 184.99746 * 12 11 10 31 31 H 1.00893 * 111.00213 * 298.75593 * 13 12 11 32 32 H 1.09003 * 110.90396 * 322.67461 * 17 15 14 33 33 H 1.09000 * 110.90529 * 86.27450 * 17 15 14 34 34 H 1.08997 * 110.33974 * 262.02824 * 18 17 15 35 35 H 1.08997 * 110.56919 * 139.41672 * 18 17 15 36 36 H 1.09005 * 109.87640 * 242.73999 * 19 18 17 37 37 H 1.08996 * 109.88247 * 121.59029 * 19 18 17 38 38 H 1.09000 * 113.61014 * 334.56923 * 21 14 13 39 39 H 1.09000 * 113.61191 * 105.47371 * 21 14 13 40 40 H 1.09000 * 113.61258 * 270.88394 * 22 21 14 41 41 H 1.08995 * 113.61515 * 139.97661 * 22 21 14 42 42 H 1.08993 * 113.61459 * 220.02297 * 23 22 21 43 43 H 1.09001 * 113.61413 * 89.11566 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 8 3.9880 -2.5413 -0.0010 11 6 5.4125 -2.6540 -0.0021 12 6 5.8070 -4.1323 -0.0012 13 7 5.3668 -4.7572 -1.2556 14 6 5.8361 -6.1465 -1.3447 15 6 7.3484 -6.2506 -1.5517 16 1 7.8773 -6.0374 -0.6227 17 6 7.8127 -5.2909 -2.6768 18 6 9.1200 -5.9690 -3.1600 19 6 8.9875 -7.4293 -2.6859 20 8 7.7044 -7.5578 -2.0509 21 6 5.0182 -7.0118 -2.3180 22 6 5.1350 -8.1450 -1.2849 23 6 5.3047 -7.0495 -0.2190 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6803 0.8889 26 1 3.8746 -0.6799 -0.8911 27 1 5.8160 -2.1701 0.8875 28 1 5.8146 -2.1708 -0.8925 29 1 5.3319 -4.6347 0.8413 30 1 6.8900 -4.2193 0.0875 31 1 4.3637 -4.7076 -1.3518 32 1 7.0775 -5.2492 -3.4804 33 1 8.0114 -4.2949 -2.2810 34 1 9.9858 -5.4949 -2.6979 35 1 9.1947 -5.9260 -4.2465 36 1 9.7788 -7.6606 -1.9728 37 1 9.0473 -8.1033 -3.5404 38 1 3.9976 -6.6581 -2.4646 39 1 5.5337 -7.2206 -3.2553 40 1 6.0205 -8.7666 -1.4170 41 1 4.2209 -8.7275 -1.1706 42 1 6.0515 -7.2888 0.5379 43 1 4.3624 -6.7062 0.2081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660641362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:36 Heat of formation + Delta-G solvation = -94.458159 kcal Electronic energy + Delta-G solvation = -21377.356717 eV Core-core repulsion = 18229.245546 eV Total energy + Delta-G solvation = -3148.111171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47894 -39.08092 -38.51460 -35.33994 -34.60570 -32.86542 -30.84054 -30.01077 -28.70154 -26.74065 -25.01284 -23.99682 -23.21384 -22.40773 -22.06214 -19.80732 -19.05070 -17.73810 -17.38311 -17.19095 -16.73164 -16.58073 -16.38314 -15.68190 -15.43946 -15.23838 -14.97522 -14.61990 -14.38482 -13.91807 -13.73087 -13.42309 -13.27964 -13.02316 -12.63662 -12.61497 -12.50961 -12.42761 -12.19327 -12.00897 -11.82773 -11.79025 -11.54024 -11.36544 -11.25881 -11.12680 -10.91530 -10.50749 -10.32806 -9.27581 -8.37254 -6.45012 1.33650 1.36579 1.47332 2.29526 2.67812 2.95630 3.11971 3.26543 3.60101 3.63044 3.73752 3.93032 3.98867 4.09238 4.16575 4.25338 4.37687 4.40942 4.49850 4.51873 4.58973 4.65762 4.78532 4.79212 4.83030 4.88901 4.90603 4.94062 5.02876 5.03706 5.05821 5.13898 5.21621 5.24845 5.34539 5.44456 5.55111 5.92443 5.97112 6.17430 6.37792 6.59076 6.75750 7.19626 8.79857 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029843 B = 0.003786 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.015758 B = 7393.010008 C = 7924.148612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.544 4.544 8 H 0.030 0.970 9 C 0.182 3.818 10 O -0.405 6.405 11 C 0.053 3.947 12 C 0.074 3.926 13 N -0.671 5.671 14 C 0.100 3.900 15 C 0.111 3.889 16 H 0.071 0.929 17 C -0.129 4.129 18 C -0.154 4.154 19 C 0.041 3.959 20 O -0.383 6.383 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.168 4.168 24 H 0.273 0.727 25 H 0.011 0.989 26 H 0.010 0.990 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.102 0.898 31 H 0.348 0.652 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.639 -13.120 -4.520 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.169 1.169 7 C -0.582 4.582 8 H 0.048 0.952 9 C 0.106 3.894 10 O -0.325 6.325 11 C -0.024 4.024 12 C -0.055 4.055 13 N -0.303 5.303 14 C 0.008 3.992 15 C 0.053 3.947 16 H 0.089 0.911 17 C -0.167 4.167 18 C -0.192 4.192 19 C -0.036 4.036 20 O -0.302 6.302 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.208 4.208 24 H 0.082 0.918 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.120 0.880 31 H 0.167 0.833 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 21.770 -13.104 -4.871 25.872 hybrid contribution -0.779 0.634 0.717 1.234 sum 20.991 -12.470 -4.154 24.766 Atomic orbital electron populations 1.70035 1.08270 1.28758 1.51169 1.25843 0.95789 1.03430 0.93491 0.85604 0.79428 0.77516 0.79760 1.18439 1.19903 1.16872 1.21171 0.91029 0.93798 1.52218 0.95157 1.20271 0.93137 0.81037 0.94921 1.87816 1.21269 1.28181 1.95248 1.22696 0.81818 0.97464 1.00428 1.21875 1.00738 0.92057 0.90818 1.60236 1.18729 1.15749 1.35561 1.22198 0.93893 0.86315 0.96793 1.22526 0.92083 0.83034 0.97069 0.91112 1.22888 0.96709 0.99107 0.97953 1.23004 0.98300 0.95236 1.02643 1.23308 0.85444 0.97298 0.97528 1.88848 1.36584 1.29119 1.75627 1.22921 0.99174 0.95954 0.98043 1.22675 1.02298 0.96009 0.95236 1.23572 1.00961 0.98691 0.97562 0.91827 0.97173 0.97242 0.92610 0.92788 0.95129 0.88035 0.83297 0.91493 0.90107 0.89679 0.89848 0.91598 0.89049 0.90951 0.90818 0.88649 0.91576 0.91297 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.58 13.96 21.45 0.30 -59.28 16 2 C 0.01 0.73 5.47 84.65 0.46 1.20 16 3 Si 0.96 43.44 27.47 68.60 1.88 45.32 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.25 -10.24 6.54 99.48 0.65 -9.59 16 7 C -0.54 -33.22 9.99 25.60 0.26 -32.96 16 8 H 0.03 2.08 8.06 -2.91 -0.02 2.05 16 9 C 0.18 9.11 4.76 71.23 0.34 9.45 16 10 O -0.41 -18.45 9.94 -148.98 -1.48 -19.93 16 11 C 0.05 1.74 6.28 71.98 0.45 2.20 16 12 C 0.07 2.01 5.70 86.30 0.49 2.50 16 13 N -0.67 -18.61 5.85 -467.55 -2.73 -21.34 16 14 C 0.10 2.36 0.76 4.05 0.00 2.36 16 15 C 0.11 2.27 2.56 31.28 0.08 2.35 16 16 H 0.07 1.39 7.60 -2.38 -0.02 1.37 16 17 C -0.13 -2.43 6.09 31.96 0.19 -2.24 16 18 C -0.15 -2.12 7.02 31.65 0.22 -1.90 16 19 C 0.04 0.59 7.70 72.35 0.56 1.15 16 20 O -0.38 -7.79 8.14 -148.98 -1.21 -9.00 16 21 C -0.12 -2.93 7.04 31.12 0.22 -2.71 16 22 C -0.12 -2.75 7.58 31.12 0.24 -2.52 16 23 C -0.17 -4.01 6.41 31.12 0.20 -3.81 16 24 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.01 0.51 7.20 -2.38 -0.02 0.49 16 26 H 0.01 0.47 7.57 -2.38 -0.02 0.45 16 27 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.03 0.89 7.52 -2.39 -0.02 0.87 16 30 H 0.10 2.19 7.11 -2.38 -0.02 2.17 16 31 H 0.35 11.39 8.13 -89.70 -0.73 10.66 16 32 H 0.07 1.47 8.06 -2.39 -0.02 1.45 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.84 7.94 -2.39 -0.02 1.82 16 39 H 0.07 1.73 7.76 -2.39 -0.02 1.71 16 40 H 0.10 2.09 6.47 -2.39 -0.02 2.07 16 41 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 43 H 0.07 1.81 8.12 -2.39 -0.02 1.79 16 Total: -1.00 -67.65 336.55 0.66 -67.00 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.19 Total: 22.15 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 3.71 Total: -24.92 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.43 Total: -80.62 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -2.69 Total: -28.93 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.32 kcal Total: -67.65 0.66 -67.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660641362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.463 kcal (2) G-P(sol) polarization free energy of solvation -67.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds