Wall clock time and date at job start Mon Mar 30 2020 00:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34228 * 117.00033 * 2 1 4 4 O 1.20824 * 119.99717 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99997 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.50458 * 300.08422 * 5 3 2 7 7 C 1.53124 * 109.53314 * 60.18165 * 5 3 2 8 8 C 1.53123 * 109.15980 * 177.61215 * 7 5 3 9 9 C 1.53036 * 109.27788 * 302.34618 * 8 7 5 10 10 N 1.46846 * 109.52384 * 59.18000 * 9 8 7 11 11 C 1.46903 * 110.99717 * 174.15896 * 10 9 8 12 12 C 1.53000 * 109.47039 * 66.04791 * 11 10 9 13 13 C 1.52996 * 109.46834 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47099 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99624 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99888 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00187 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99596 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46978 * 59.99952 * 18 16 14 20 20 H 1.48500 * 109.46830 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46894 * 299.99780 * 18 16 14 22 22 C 1.46842 * 111.19700 * 298.25435 * 10 9 8 23 23 H 1.08997 * 109.47281 * 59.99472 * 1 2 3 24 24 H 1.09004 * 109.46974 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46877 * 299.99555 * 1 2 3 26 26 H 1.09002 * 109.46975 * 299.91541 * 6 5 3 27 27 H 1.08995 * 109.47002 * 59.91947 * 6 5 3 28 28 H 1.09005 * 109.47024 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.52368 * 57.70851 * 7 5 3 30 30 H 1.08997 * 109.52219 * 297.51727 * 7 5 3 31 31 H 1.09000 * 109.50367 * 182.40163 * 8 7 5 32 32 H 1.09006 * 109.50264 * 62.28502 * 8 7 5 33 33 H 1.08999 * 109.46075 * 179.19317 * 9 8 7 34 34 H 1.08994 * 109.46383 * 299.17045 * 9 8 7 35 35 H 1.09007 * 109.46443 * 186.04380 * 11 10 9 36 36 H 1.08994 * 109.47048 * 306.04358 * 11 10 9 37 37 H 1.08997 * 109.46962 * 299.99913 * 12 11 10 38 38 H 1.08997 * 109.47270 * 59.99434 * 12 11 10 39 39 H 1.08997 * 109.47588 * 299.99913 * 13 12 11 40 40 H 1.09006 * 109.47151 * 60.00391 * 13 12 11 41 41 H 0.97001 * 119.99460 * 180.02562 * 17 16 14 42 42 H 1.09006 * 109.46447 * 181.75636 * 22 10 9 43 43 H 1.08994 * 109.46873 * 301.72670 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1148 0.5794 1.2470 7 6 4.1147 0.5853 -1.2530 8 6 5.6396 0.7223 -1.2752 9 6 6.0142 2.2057 -1.2381 10 7 5.4674 2.8196 -0.0214 11 6 5.9233 4.2091 0.1177 12 6 5.3340 5.0548 -1.0131 13 6 5.8084 6.5021 -0.8678 14 6 5.2285 7.3349 -1.9820 15 1 4.5856 6.8777 -2.7196 16 6 5.5188 8.6806 -2.0596 17 7 6.3020 9.2372 -1.1617 18 14 4.7994 9.7130 -3.4403 19 1 3.3168 9.6692 -3.3702 20 1 5.2609 11.1175 -3.3001 21 1 5.2494 9.1728 -4.7484 22 6 4.0011 2.7422 -0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.7270 1.0729 2.1382 27 1 3.8049 -0.4656 1.2463 28 1 5.2034 0.6363 1.2458 29 1 3.6937 1.0556 -2.1416 30 1 3.8440 -0.4704 -1.2356 31 1 6.0323 0.2704 -2.1861 32 1 6.0630 0.2182 -0.4064 33 1 7.0995 2.3063 -1.2394 34 1 5.6020 2.7064 -2.1141 35 1 5.5928 4.6055 1.0779 36 1 7.0115 4.2413 0.0664 37 1 5.6643 4.6583 -1.9732 38 1 4.2458 5.0225 -0.9618 39 1 5.4777 6.8982 0.0922 40 1 6.8967 6.5346 -0.9190 41 1 6.5059 10.1840 -1.2162 42 1 3.6243 3.2325 0.8972 43 1 3.5985 3.2403 -0.8823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412107520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:38 Heat of formation + Delta-G solvation = -104.143912 kcal Electronic energy + Delta-G solvation = -21549.066340 eV Core-core repulsion = 18400.535163 eV Total energy + Delta-G solvation = -3148.531177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01681 -39.06569 -36.55031 -35.32616 -33.17891 -31.90435 -30.60244 -28.00584 -27.03998 -26.59695 -24.31041 -23.90917 -22.14127 -21.12803 -20.24767 -18.43911 -17.41794 -17.04190 -16.44688 -16.19619 -15.02008 -14.94759 -14.64077 -14.53907 -14.18374 -13.95348 -13.61151 -13.25672 -12.88814 -12.65881 -12.51934 -12.22697 -12.17213 -11.97743 -11.74533 -11.24052 -11.11020 -10.98892 -10.92969 -10.84961 -10.72939 -10.64719 -10.57732 -10.31221 -10.13532 -9.58654 -9.41193 -9.15961 -8.32014 -7.87348 -5.97213 -3.99574 2.13443 2.54885 3.34868 3.38842 3.41862 4.19725 4.41263 4.48397 4.57752 4.74320 4.91610 4.99345 5.01331 5.09526 5.17698 5.33376 5.38135 5.44446 5.59117 5.63191 5.73114 5.77870 5.79071 5.84590 5.90814 5.99821 6.08465 6.11906 6.16543 6.26864 6.32345 6.36450 6.63224 6.80387 7.07839 7.31875 7.41049 7.67078 7.69063 7.84354 8.02387 8.46022 9.07010 9.64311 11.13864 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.004183 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.203053 B = 6691.469315 C = 7363.698688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.469 3.531 4 O -0.501 6.501 5 C -0.046 4.046 6 C -0.131 4.131 7 C -0.108 4.108 8 C -0.114 4.114 9 C 0.046 3.954 10 N -0.535 5.535 11 C 0.055 3.945 12 C -0.146 4.146 13 C 0.026 3.974 14 C -0.520 4.520 15 H 0.052 0.948 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.073 3.927 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.016 0.984 40 H 0.015 0.985 41 H 0.261 0.739 42 H 0.081 0.919 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.426 -22.177 2.996 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.387 6.387 5 C -0.047 4.047 6 C -0.189 4.189 7 C -0.146 4.146 8 C -0.152 4.152 9 C -0.082 4.082 10 N -0.258 5.258 11 C -0.072 4.072 12 C -0.185 4.185 13 C -0.012 4.012 14 C -0.559 4.559 15 H 0.070 0.930 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.055 4.055 23 H 0.081 0.919 24 H 0.118 0.882 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.397 -21.974 3.459 22.890 hybrid contribution -1.059 1.325 -1.501 2.265 sum -6.455 -20.649 1.958 21.723 Atomic orbital electron populations 1.23254 0.76689 1.03473 1.02606 1.86500 1.23091 1.33618 1.84200 1.23857 0.91905 0.81234 0.71969 1.90699 1.67076 1.36319 1.44601 1.20565 0.85738 0.99043 0.99402 1.21791 1.03389 0.99237 0.94446 1.21632 0.96873 1.00642 0.95460 1.21631 0.94419 0.96722 1.02442 1.22152 1.00200 0.93949 0.91893 1.62199 1.07585 1.18945 1.37046 1.22324 1.00132 0.85069 0.99686 1.22241 0.99962 0.99215 0.97116 1.19008 0.96377 0.88779 0.97042 1.21227 1.29535 0.93726 1.11389 0.92991 1.25014 0.95238 0.98021 0.96109 1.69955 1.36680 1.11928 1.34968 0.86681 0.79550 0.79293 0.82627 1.20264 1.21237 1.20289 1.21893 0.88839 0.91860 1.02911 0.91949 0.88213 0.91945 0.92480 0.92162 0.89326 0.91710 0.90601 0.91167 0.90597 0.90474 0.94090 0.90934 0.90831 0.93403 0.93151 0.96591 0.96632 0.92974 0.90026 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.04 10.40 -39.25 -0.41 -4.45 16 3 C 0.47 6.33 6.56 36.00 0.24 6.57 16 4 O -0.50 -8.40 15.73 -18.75 -0.29 -8.69 16 5 C -0.05 -0.56 0.71 -155.58 -0.11 -0.67 16 6 C -0.13 -1.36 7.97 37.16 0.30 -1.07 16 7 C -0.11 -1.15 4.72 -26.60 -0.13 -1.28 16 8 C -0.11 -1.15 5.74 -26.65 -0.15 -1.31 16 9 C 0.05 0.60 5.05 -3.83 -0.02 0.58 16 10 N -0.53 -7.78 4.14 -234.67 -0.97 -8.75 16 11 C 0.05 0.95 5.36 -3.82 -0.02 0.93 16 12 C -0.15 -3.08 4.45 -26.73 -0.12 -3.20 16 13 C 0.03 0.67 4.97 -27.88 -0.14 0.54 16 14 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 18 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.07 1.10 2.85 -3.83 -0.01 1.09 16 23 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 24 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 28 H 0.09 0.92 6.01 -51.93 -0.31 0.60 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.71 6.58 -51.93 -0.34 0.37 16 33 H 0.08 0.96 8.06 -51.93 -0.42 0.55 16 34 H 0.04 0.60 6.75 -51.93 -0.35 0.25 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 37 H 0.05 1.00 6.68 -51.93 -0.35 0.65 16 38 H 0.05 1.10 6.51 -51.93 -0.34 0.76 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.08 1.31 8.10 -51.93 -0.42 0.88 16 43 H 0.05 0.88 6.54 -51.93 -0.34 0.54 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -32.26 336.78 -7.87 -40.13 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -7.48 Total: -3.42 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 0.49 Total: -10.38 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.24 Total: -35.45 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.70 Total: -13.14 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.26 -7.87 -40.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412107520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.011 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds