Wall clock time and date at job start Mon Mar 30 2020 00:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34228 * 117.00033 * 2 1 4 4 O 1.20824 * 119.99717 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99997 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.50458 * 300.08422 * 5 3 2 7 7 C 1.53124 * 109.53314 * 60.18165 * 5 3 2 8 8 C 1.53123 * 109.15980 * 177.61215 * 7 5 3 9 9 C 1.53036 * 109.27788 * 302.34618 * 8 7 5 10 10 N 1.46846 * 109.52384 * 59.18000 * 9 8 7 11 11 C 1.46903 * 110.99717 * 174.15896 * 10 9 8 12 12 C 1.53000 * 109.47039 * 66.04791 * 11 10 9 13 13 C 1.52996 * 109.46834 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.47099 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99624 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99888 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00187 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99596 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46978 * 59.99952 * 18 16 14 20 20 H 1.48500 * 109.46830 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46894 * 299.99780 * 18 16 14 22 22 C 1.46842 * 111.19700 * 298.25435 * 10 9 8 23 23 H 1.08997 * 109.47281 * 59.99472 * 1 2 3 24 24 H 1.09004 * 109.46974 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46877 * 299.99555 * 1 2 3 26 26 H 1.09002 * 109.46975 * 299.91541 * 6 5 3 27 27 H 1.08995 * 109.47002 * 59.91947 * 6 5 3 28 28 H 1.09005 * 109.47024 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.52368 * 57.70851 * 7 5 3 30 30 H 1.08997 * 109.52219 * 297.51727 * 7 5 3 31 31 H 1.09000 * 109.50367 * 182.40163 * 8 7 5 32 32 H 1.09006 * 109.50264 * 62.28502 * 8 7 5 33 33 H 1.08999 * 109.46075 * 179.19317 * 9 8 7 34 34 H 1.08994 * 109.46383 * 299.17045 * 9 8 7 35 35 H 1.09007 * 109.46443 * 186.04380 * 11 10 9 36 36 H 1.08994 * 109.47048 * 306.04358 * 11 10 9 37 37 H 1.08997 * 109.46962 * 299.99913 * 12 11 10 38 38 H 1.08997 * 109.47270 * 59.99434 * 12 11 10 39 39 H 1.08997 * 109.47588 * 299.99913 * 13 12 11 40 40 H 1.09006 * 109.47151 * 60.00391 * 13 12 11 41 41 H 0.97001 * 119.99460 * 180.02562 * 17 16 14 42 42 H 1.09006 * 109.46447 * 181.75636 * 22 10 9 43 43 H 1.08994 * 109.46873 * 301.72670 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1148 0.5794 1.2470 7 6 4.1147 0.5853 -1.2530 8 6 5.6396 0.7223 -1.2752 9 6 6.0142 2.2057 -1.2381 10 7 5.4674 2.8196 -0.0214 11 6 5.9233 4.2091 0.1177 12 6 5.3340 5.0548 -1.0131 13 6 5.8084 6.5021 -0.8678 14 6 5.2285 7.3349 -1.9820 15 1 4.5856 6.8777 -2.7196 16 6 5.5188 8.6806 -2.0596 17 7 6.3020 9.2372 -1.1617 18 14 4.7994 9.7130 -3.4403 19 1 3.3168 9.6692 -3.3702 20 1 5.2609 11.1175 -3.3001 21 1 5.2494 9.1728 -4.7484 22 6 4.0011 2.7422 -0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.7270 1.0729 2.1382 27 1 3.8049 -0.4656 1.2463 28 1 5.2034 0.6363 1.2458 29 1 3.6937 1.0556 -2.1416 30 1 3.8440 -0.4704 -1.2356 31 1 6.0323 0.2704 -2.1861 32 1 6.0630 0.2182 -0.4064 33 1 7.0995 2.3063 -1.2394 34 1 5.6020 2.7064 -2.1141 35 1 5.5928 4.6055 1.0779 36 1 7.0115 4.2413 0.0664 37 1 5.6643 4.6583 -1.9732 38 1 4.2458 5.0225 -0.9618 39 1 5.4777 6.8982 0.0922 40 1 6.8967 6.5346 -0.9190 41 1 6.5059 10.1840 -1.2162 42 1 3.6243 3.2325 0.8972 43 1 3.5985 3.2403 -0.8823 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412107520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:38 Heat of formation + Delta-G solvation = -123.912949 kcal Electronic energy + Delta-G solvation = -21549.923590 eV Core-core repulsion = 18400.535163 eV Total energy + Delta-G solvation = -3149.388427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.05877 -40.17709 -37.59117 -36.74982 -35.11653 -33.11387 -32.25835 -28.86722 -28.32689 -27.92817 -25.90907 -24.90944 -23.65068 -22.49027 -21.63756 -19.55091 -18.64675 -18.34762 -17.95237 -17.40584 -16.59705 -16.24729 -16.07157 -15.71734 -15.46500 -15.07735 -14.75453 -14.59245 -14.19671 -13.93765 -13.76762 -13.58052 -13.35868 -13.08629 -12.93939 -12.76478 -12.68083 -12.51420 -12.43358 -12.19381 -12.04989 -11.83904 -11.65409 -11.49556 -11.39557 -11.37090 -11.21842 -11.12208 -10.58623 -9.23331 -8.23308 -6.35477 1.08549 1.35087 1.38332 1.46509 1.62740 2.37025 3.00209 3.08452 3.41786 3.64410 3.80658 4.05156 4.06945 4.20106 4.23339 4.29754 4.29950 4.34537 4.50926 4.58612 4.64254 4.67950 4.70450 4.75603 4.88645 4.94103 4.98683 5.02942 5.08234 5.09426 5.18488 5.22185 5.25107 5.34266 5.45368 5.53402 5.67180 5.80279 6.01072 6.13477 6.22399 6.65311 6.80124 7.33569 8.87482 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022284 B = 0.004183 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.203053 B = 6691.469315 C = 7363.698688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.471 3.529 4 O -0.543 6.543 5 C -0.044 4.044 6 C -0.125 4.125 7 C -0.106 4.106 8 C -0.105 4.105 9 C 0.039 3.961 10 N -0.520 5.520 11 C 0.064 3.936 12 C -0.128 4.128 13 C 0.030 3.970 14 C -0.549 4.549 15 H 0.051 0.949 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.963 3.037 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.266 1.266 22 C 0.076 3.924 23 H 0.056 0.944 24 H 0.138 0.862 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.021 0.979 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.036 0.964 39 H -0.010 1.010 40 H -0.002 1.002 41 H 0.265 0.735 42 H 0.064 0.936 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.479 -24.469 2.289 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.314 3.686 4 O -0.433 6.433 5 C -0.045 4.045 6 C -0.182 4.182 7 C -0.143 4.143 8 C -0.142 4.142 9 C -0.089 4.089 10 N -0.242 5.242 11 C -0.063 4.063 12 C -0.167 4.167 13 C -0.008 4.008 14 C -0.587 4.587 15 H 0.069 0.931 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.787 3.213 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.191 1.191 22 C -0.052 4.052 23 H 0.075 0.925 24 H 0.156 0.844 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.039 0.961 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.009 0.991 40 H 0.016 0.984 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.450 -24.312 2.750 25.067 hybrid contribution -1.085 2.017 -1.264 2.616 sum -6.535 -22.295 1.487 23.281 Atomic orbital electron populations 1.23571 0.75043 1.05877 1.02240 1.86484 1.24657 1.32052 1.83477 1.24116 0.92390 0.81261 0.70796 1.90686 1.68040 1.37817 1.46771 1.20561 0.85251 0.97158 1.01556 1.21780 1.03475 1.00113 0.92850 1.21671 0.97183 1.01709 0.93763 1.21624 0.93922 0.94274 1.04425 1.22331 1.00562 0.95921 0.90038 1.62258 1.07277 1.16647 1.38046 1.22149 1.00334 0.86157 0.97699 1.22012 0.99108 0.96702 0.98901 1.18902 0.95042 0.91728 0.95105 1.21647 1.30009 0.94786 1.12227 0.93085 1.25949 0.95440 0.99342 0.98811 1.70077 1.37680 1.12496 1.36750 0.85544 0.78827 0.77572 0.79386 1.19610 1.20263 1.19064 1.21795 0.88806 0.94014 1.00621 0.92503 0.84378 0.92260 0.93195 0.89916 0.88824 0.93021 0.87994 0.88844 0.88909 0.89555 0.96089 0.91452 0.89961 0.93283 0.94477 0.99115 0.98401 0.92610 0.91785 0.96118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.35 -7.27 10.40 -51.40 -0.53 -7.81 16 3 C 0.47 12.50 6.56 71.24 0.47 12.96 16 4 O -0.54 -18.78 15.73 21.97 0.35 -18.43 16 5 C -0.04 -1.02 0.71 -52.87 -0.04 -1.06 16 6 C -0.13 -2.30 7.97 71.98 0.57 -1.73 16 7 C -0.11 -2.00 4.72 30.68 0.14 -1.85 16 8 C -0.11 -1.80 5.74 30.65 0.18 -1.62 16 9 C 0.04 0.97 5.05 86.33 0.44 1.40 16 10 N -0.52 -14.96 4.14 -896.37 -3.71 -18.67 16 11 C 0.06 2.27 5.36 86.30 0.46 2.73 16 12 C -0.13 -5.61 4.45 30.59 0.14 -5.47 16 13 C 0.03 1.65 4.97 29.85 0.15 1.79 16 14 C -0.55 -32.85 9.11 25.60 0.23 -32.62 16 15 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 16 C 0.00 0.16 5.46 84.65 0.46 0.62 16 17 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 18 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 C 0.08 2.34 2.85 86.33 0.25 2.58 16 23 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 24 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 26 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 1.18 8.11 -2.39 -0.02 1.16 16 28 H 0.09 1.65 6.01 -2.38 -0.01 1.64 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.34 6.58 -2.38 -0.02 1.33 16 33 H 0.09 1.99 8.06 -2.39 -0.02 1.97 16 34 H 0.02 0.61 6.75 -2.39 -0.02 0.59 16 35 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 36 H 0.08 2.76 8.06 -2.39 -0.02 2.74 16 37 H 0.05 2.11 6.68 -2.39 -0.02 2.09 16 38 H 0.04 1.70 6.51 -2.39 -0.02 1.68 16 39 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.06 2.15 8.10 -2.38 -0.02 2.13 16 43 H 0.02 0.75 6.54 -2.39 -0.02 0.74 16 Total: -1.00 -71.65 336.78 4.02 -67.63 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 0.96 Total: 7.79 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 4.64 Total: -20.67 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -3.43 Total: -76.35 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.19 Total: -26.24 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -71.65 4.02 -67.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412107520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.280 kcal (2) G-P(sol) polarization free energy of solvation -71.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds