Wall clock time and date at job start Mon Mar 30 2020 01:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46775 * 2 1 4 4 C 1.53000 * 109.46991 * 177.26836 * 3 2 1 5 5 O 1.42900 * 109.47107 * 57.26859 * 3 2 1 6 6 C 1.42908 * 114.00049 * 60.00143 * 5 3 2 7 7 C 1.50697 * 109.46951 * 297.27000 * 3 2 1 8 8 O 1.21283 * 120.00267 * 350.56164 * 7 3 2 9 9 N 1.34778 * 119.99591 * 170.56359 * 7 3 2 10 10 C 1.46919 * 120.63500 * 356.95279 * 9 7 3 11 11 C 1.53192 * 108.77899 * 233.58880 * 10 9 7 12 12 C 1.53031 * 109.31251 * 305.36470 * 11 10 9 13 13 C 1.53348 * 109.61058 * 61.37299 * 12 11 10 14 14 H 1.09003 * 109.47462 * 58.54901 * 13 12 11 15 15 C 1.50697 * 109.68958 * 178.74794 * 13 12 11 16 16 H 1.08001 * 120.00143 * 119.74917 * 15 13 12 17 17 C 1.37882 * 119.99961 * 299.75581 * 15 13 12 18 18 N 1.31514 * 119.99559 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00022 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47035 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47223 * 119.99899 * 19 17 15 22 22 H 1.48498 * 109.46763 * 239.99576 * 19 17 15 23 23 C 1.46924 * 120.62905 * 176.93532 * 9 7 3 24 24 H 1.09000 * 109.46857 * 185.65864 * 1 2 3 25 25 H 1.08996 * 109.47010 * 305.65642 * 1 2 3 26 26 H 1.08998 * 109.46950 * 65.65837 * 1 2 3 27 27 H 1.08990 * 109.47215 * 239.99997 * 2 1 3 28 28 H 1.08994 * 109.47096 * 119.99691 * 2 1 3 29 29 H 1.08997 * 109.46920 * 186.15482 * 4 3 2 30 30 H 1.08997 * 109.47190 * 306.15644 * 4 3 2 31 31 H 1.09006 * 109.46706 * 66.15460 * 4 3 2 32 32 H 1.09000 * 109.46865 * 59.99260 * 6 5 3 33 33 H 1.08994 * 109.47387 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.46877 * 299.99830 * 6 5 3 35 35 H 1.09007 * 109.58409 * 353.37703 * 10 9 7 36 36 H 1.09005 * 109.58939 * 113.79743 * 10 9 7 37 37 H 1.09003 * 109.49642 * 65.31644 * 11 10 9 38 38 H 1.09007 * 109.49682 * 185.37970 * 11 10 9 39 39 H 1.09003 * 109.46151 * 181.38498 * 12 11 10 40 40 H 1.09002 * 109.46260 * 301.34109 * 12 11 10 41 41 H 0.97006 * 119.99252 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.58995 * 246.20081 * 23 9 7 43 43 H 1.09003 * 109.59101 * 6.47929 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5685 1.4432 0.0687 5 8 1.5119 2.1345 1.1333 6 6 1.8778 1.5579 2.3887 7 6 1.5936 2.1331 -1.2629 8 8 1.0836 1.4917 -2.1570 9 7 1.7613 3.4635 -1.3987 10 6 2.3162 4.2643 -0.2990 11 6 1.3575 5.4208 0.0014 12 6 1.0994 6.2110 -1.2834 13 6 0.4430 5.2980 -2.3261 14 1 -0.4903 4.9018 -1.9260 15 6 0.1600 6.0823 -3.5814 16 1 0.6117 5.7861 -4.5166 17 6 -0.6755 7.1782 -3.5360 18 7 -1.2258 7.5387 -2.3972 19 14 -1.0268 8.1500 -5.0922 20 1 -0.2919 7.5434 -6.2311 21 1 -2.4847 8.1243 -5.3733 22 1 -0.5828 9.5551 -4.9091 23 6 1.3929 4.1405 -2.6496 24 1 -0.3633 -1.0227 0.1013 25 1 -0.3633 0.5990 0.8350 26 1 -0.3633 0.4236 -0.9363 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9268 2.4667 0.1789 30 1 3.8939 0.8503 0.9235 31 1 3.9735 1.0130 -0.8473 32 1 2.9634 1.5607 2.4871 33 1 1.4384 2.1408 3.1981 34 1 1.5112 0.5326 2.4383 35 1 2.4256 3.6405 0.5882 36 1 3.2883 4.6619 -0.5908 37 1 0.4155 5.0236 0.3796 38 1 1.8022 6.0770 0.7496 39 1 0.4369 7.0492 -1.0674 40 1 2.0447 6.5871 -1.6746 41 1 -1.8133 8.3100 -2.3653 42 1 2.2897 4.5280 -3.1332 43 1 0.8954 3.4345 -3.3145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397777787.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:51 Heat of formation + Delta-G solvation = -105.916117 kcal Electronic energy + Delta-G solvation = -22635.862203 eV Core-core repulsion = 19487.254177 eV Total energy + Delta-G solvation = -3148.608026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78698 -39.31099 -38.33426 -35.36164 -34.12882 -33.12145 -32.08003 -30.93429 -28.17530 -27.03448 -26.33457 -24.73235 -23.43066 -22.90848 -21.01925 -19.93089 -18.83266 -18.20178 -17.33741 -16.86743 -16.54236 -16.28266 -15.79189 -15.50968 -15.07851 -14.90019 -14.64563 -14.23636 -14.10960 -14.05590 -13.64130 -13.53297 -13.48335 -13.09718 -12.91319 -12.83788 -12.63768 -12.52806 -12.24097 -11.93633 -11.85477 -11.84804 -11.78159 -11.56469 -11.26024 -10.84928 -10.61306 -10.49082 -10.28999 -9.46166 -8.11107 -6.26853 1.39377 1.40796 1.45178 1.53218 2.12965 2.43331 2.83702 3.15188 3.46713 3.72405 3.85914 4.20745 4.30091 4.33191 4.38090 4.43681 4.54645 4.56928 4.61118 4.61592 4.71178 4.74742 4.82187 4.86025 4.90977 4.96880 5.01597 5.05669 5.14124 5.17663 5.22435 5.33055 5.42674 5.47861 5.60773 5.61183 5.92445 6.12425 6.14160 6.33122 6.57572 6.82981 7.18620 7.41358 8.93167 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030130 B = 0.005282 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.087942 B = 5299.517986 C = 5600.277337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.106 3.894 4 C -0.176 4.176 5 O -0.383 6.383 6 C 0.012 3.988 7 C 0.517 3.483 8 O -0.581 6.581 9 N -0.595 5.595 10 C 0.099 3.901 11 C -0.121 4.121 12 C -0.105 4.105 13 C 0.043 3.957 14 H -0.019 1.019 15 C -0.537 4.537 16 H 0.053 0.947 17 C 0.015 3.985 18 N -0.915 5.915 19 Si 0.958 3.042 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.275 1.275 23 C 0.127 3.873 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.038 0.962 41 H 0.261 0.739 42 H 0.063 0.937 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.158 -11.630 11.928 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.063 3.937 4 C -0.233 4.233 5 O -0.303 6.303 6 C -0.083 4.083 7 C 0.305 3.695 8 O -0.462 6.462 9 N -0.325 5.325 10 C -0.022 4.022 11 C -0.159 4.159 12 C -0.143 4.143 13 C 0.023 3.977 14 H -0.001 1.001 15 C -0.575 4.575 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.554 5.554 19 Si 0.783 3.217 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.200 1.200 23 C 0.005 3.995 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.148 0.852 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.678 -11.654 11.524 19.561 hybrid contribution -0.751 0.680 -1.110 1.502 sum 9.927 -10.974 10.415 18.096 Atomic orbital electron populations 1.21733 0.96022 1.01901 1.01247 1.21887 0.96671 0.93889 1.03947 1.21606 0.95885 0.92418 0.83768 1.22489 0.91244 1.04765 1.04783 1.88050 1.75032 1.52799 1.14428 1.23137 1.01522 0.99644 0.84023 1.20893 0.77648 0.81921 0.89042 1.90627 1.45311 1.65615 1.44608 1.48313 1.61271 1.06895 1.16045 1.22378 0.95811 0.93520 0.90529 1.21823 0.98901 0.97214 0.97993 1.21480 0.98779 0.99499 0.94571 1.18903 0.92142 0.91743 0.94863 1.00069 1.21462 1.28620 1.12510 0.94945 0.92853 1.25735 0.95288 0.98212 0.99137 1.70044 1.31774 1.27079 1.26489 0.85508 0.77754 0.78548 0.79860 1.19195 1.20867 1.20029 1.21587 0.98355 0.94316 0.85288 0.91151 0.92722 0.95012 0.91033 0.87662 0.90329 0.87720 0.91200 0.91265 0.88419 0.92491 0.85196 0.90824 0.94364 0.89623 0.92136 0.94344 0.92937 0.91845 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 9.47 71.98 0.68 -3.51 16 2 C -0.13 -2.93 4.15 30.60 0.13 -2.80 16 3 C 0.11 2.72 0.37 -11.54 0.00 2.72 16 4 C -0.18 -3.19 7.79 71.98 0.56 -2.63 16 5 O -0.38 -9.48 6.61 -148.98 -0.98 -10.46 16 6 C 0.01 0.17 10.19 113.37 1.16 1.33 16 7 C 0.52 19.39 6.31 87.66 0.55 19.94 16 8 O -0.58 -26.03 13.64 -3.04 -0.04 -26.07 16 9 N -0.59 -23.17 2.97 -818.89 -2.43 -25.60 16 10 C 0.10 3.13 4.91 86.36 0.42 3.55 16 11 C -0.12 -4.53 6.08 30.67 0.19 -4.35 16 12 C -0.11 -4.99 4.98 30.72 0.15 -4.83 16 13 C 0.04 2.27 2.26 -11.36 -0.03 2.24 16 14 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 15 C -0.54 -30.76 8.57 25.60 0.22 -30.54 16 16 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 17 C 0.02 0.87 5.31 84.66 0.45 1.31 16 18 N -0.91 -53.99 11.34 21.45 0.24 -53.75 16 19 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 C 0.13 5.90 5.65 86.36 0.49 6.39 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.49 7.42 -2.39 -0.02 1.47 16 26 H 0.03 1.14 6.24 -2.39 -0.01 1.12 16 27 H 0.07 1.79 7.90 -2.39 -0.02 1.77 16 28 H 0.11 1.63 6.69 -2.39 -0.02 1.61 16 29 H 0.08 1.39 6.17 -2.39 -0.01 1.38 16 30 H 0.10 1.18 6.88 -2.39 -0.02 1.17 16 31 H 0.07 1.33 8.14 -2.38 -0.02 1.32 16 32 H 0.07 0.69 6.56 -2.39 -0.02 0.68 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 0.72 6.48 -2.38 -0.02 0.71 16 35 H 0.13 3.42 3.68 -2.38 -0.01 3.41 16 36 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 39 H 0.06 3.27 6.08 -2.39 -0.01 3.26 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 42 H 0.06 2.79 8.14 -2.38 -0.02 2.77 16 43 H 0.05 2.64 7.00 -2.39 -0.02 2.63 16 Total: -1.00 -70.87 321.89 4.76 -66.12 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.98 Total: 14.30 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 4.97 Total: -11.18 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -2.19 Total: -79.35 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -1.03 Total: -36.53 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -70.87 4.76 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397777787.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.801 kcal (2) G-P(sol) polarization free energy of solvation -70.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds