Wall clock time and date at job start Mon Mar 30 2020 01:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.47267 * 2 1 4 4 C 1.50694 * 109.47507 * 240.00123 * 2 1 3 5 5 H 1.07999 * 119.99941 * 241.35233 * 4 2 1 6 6 C 1.37873 * 120.00295 * 61.34304 * 4 2 1 7 7 N 1.31515 * 120.00638 * 193.97745 * 6 4 2 8 8 Si 1.86800 * 119.99869 * 13.98240 * 6 4 2 9 9 H 1.48501 * 109.47432 * 84.54601 * 8 6 4 10 10 H 1.48496 * 109.47555 * 204.54799 * 8 6 4 11 11 H 1.48500 * 109.46947 * 324.54791 * 8 6 4 12 12 C 1.53004 * 109.47160 * 119.99830 * 2 1 3 13 13 N 1.46506 * 109.47056 * 300.00178 * 12 2 1 14 14 C 1.34779 * 119.99774 * 179.97438 * 13 12 2 15 15 O 1.21271 * 120.00076 * 359.97438 * 14 13 12 16 16 C 1.50695 * 119.99561 * 180.02562 * 14 13 12 17 17 O 1.42898 * 109.46834 * 180.02562 * 16 14 13 18 18 C 1.42906 * 114.00030 * 180.02562 * 17 16 14 19 19 C 1.54886 * 110.48913 * 93.23785 * 18 17 16 20 20 C 1.55243 * 102.58719 * 156.67612 * 19 18 17 21 21 C 1.54259 * 104.23207 * 322.08407 * 20 19 18 22 22 C 1.53878 * 106.60148 * 23.61265 * 21 20 19 23 23 H 1.09003 * 109.46962 * 309.36810 * 1 2 3 24 24 H 1.09001 * 109.47067 * 69.36726 * 1 2 3 25 25 H 1.08995 * 109.47026 * 189.36710 * 1 2 3 26 26 H 1.08993 * 109.47041 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.46583 * 300.00160 * 3 2 1 28 28 H 1.08997 * 109.46569 * 59.99912 * 3 2 1 29 29 H 0.96995 * 120.00540 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47268 * 180.02562 * 12 2 1 31 31 H 1.08995 * 109.46823 * 59.99579 * 12 2 1 32 32 H 0.97002 * 119.99916 * 359.97438 * 13 12 2 33 33 H 1.08995 * 109.47620 * 60.00201 * 16 14 13 34 34 H 1.09004 * 109.47406 * 299.99989 * 16 14 13 35 35 H 1.08996 * 110.43410 * 330.69385 * 18 17 16 36 36 H 1.08996 * 110.75588 * 275.07036 * 19 18 17 37 37 H 1.08998 * 110.75757 * 38.44090 * 19 18 17 38 38 H 1.09003 * 110.46330 * 203.39311 * 20 19 18 39 39 H 1.09000 * 110.58031 * 80.83228 * 20 19 18 40 40 H 1.09004 * 110.03388 * 264.32669 * 21 20 19 41 41 H 1.08997 * 110.07407 * 142.91588 * 21 20 19 42 42 H 1.09001 * 110.02883 * 240.71885 * 22 21 20 43 43 H 1.08994 * 110.07467 * 119.30277 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6352 -1.6010 -1.1314 6 6 1.7224 -0.2234 -2.4825 7 7 1.9159 -0.9725 -3.5460 8 14 1.0277 1.5006 -2.6684 9 1 2.1417 2.4817 -2.7084 10 1 0.2471 1.5865 -3.9288 11 1 0.1418 1.8042 -1.5159 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8768 -0.4913 3.6696 15 8 2.5733 -1.4779 3.7809 16 6 1.3740 0.2188 4.9000 17 8 1.8504 -0.4548 6.0667 18 6 1.4278 0.1409 7.2950 19 6 0.1261 -0.5278 7.8023 20 6 0.1645 -0.2309 9.3256 21 6 1.6541 -0.3701 9.7016 22 6 2.4574 -0.1336 8.4106 23 1 -0.3633 0.6519 0.7945 24 1 -0.3633 0.3621 -0.9618 25 1 -0.3633 -1.0139 0.1673 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6975 -0.6301 -4.4268 30 1 3.1300 -0.7208 1.2495 31 1 1.6766 -1.7488 1.2493 32 1 0.9942 0.7583 2.3564 33 1 0.2840 0.2187 4.8996 34 1 1.7372 1.2465 4.9004 35 1 1.2809 1.2134 7.1671 36 1 -0.7486 -0.0713 7.3391 37 1 0.1461 -1.6018 7.6173 38 1 -0.4363 -0.9587 9.8710 39 1 -0.1870 0.7809 9.5277 40 1 1.8504 -1.3713 10.0854 41 1 1.9223 0.3756 10.4500 42 1 3.0434 -1.0201 8.1679 43 1 3.1152 0.7270 8.5316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457986354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:18 Heat of formation + Delta-G solvation = -84.697070 kcal Electronic energy + Delta-G solvation = -20888.879450 eV Core-core repulsion = 17741.191552 eV Total energy + Delta-G solvation = -3147.687899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.68352 -38.74285 -36.80849 -35.85761 -33.32963 -31.54813 -29.20009 -28.88941 -27.27610 -26.41335 -25.45089 -24.57631 -21.00956 -20.66351 -20.23635 -19.21786 -17.27177 -17.06944 -16.12002 -15.94324 -15.70344 -15.36557 -15.02166 -14.52467 -14.15710 -13.66036 -13.55040 -13.11563 -12.93026 -12.69619 -12.49788 -12.28781 -12.21369 -12.06627 -11.72535 -11.49150 -11.39206 -11.26164 -10.88291 -10.71561 -10.45886 -10.32992 -10.19172 -10.08843 -9.69293 -9.47668 -9.12872 -8.70815 -8.56504 -8.46009 -6.16007 -4.13497 2.92349 3.02036 3.22304 3.29120 3.37202 4.04669 4.29865 4.33734 4.33913 4.65331 4.84922 5.01915 5.08988 5.09875 5.14569 5.19195 5.22864 5.32850 5.37625 5.57671 5.63023 5.74018 5.75462 5.88303 5.93808 6.02324 6.03347 6.04303 6.32761 6.45123 6.50144 6.60650 6.67288 6.75470 6.92640 7.05013 7.19975 7.40892 7.70531 7.89906 8.43270 8.58576 8.89642 9.47612 10.97124 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.048290 B = 0.003245 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.689757 B = 8626.509612 C = 8803.961050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.029 3.971 3 C -0.148 4.148 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.144 3.856 13 N -0.722 5.722 14 C 0.506 3.494 15 O -0.527 6.527 16 C 0.043 3.957 17 O -0.352 6.352 18 C 0.080 3.920 19 C -0.149 4.149 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.123 4.123 23 H 0.021 0.979 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.029 0.971 29 H 0.265 0.735 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 6.878 22.590 24.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.022 3.978 13 N -0.375 5.375 14 C 0.290 3.710 15 O -0.403 6.403 16 C -0.037 4.037 17 O -0.270 6.270 18 C 0.022 3.978 19 C -0.186 4.186 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.161 4.161 23 H 0.040 0.960 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.230 0.770 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.216 5.944 22.455 23.608 hybrid contribution -0.784 1.647 -0.404 1.868 sum -5.000 7.591 22.051 23.851 Atomic orbital electron populations 1.22301 0.97836 0.99872 0.99962 1.18725 0.92523 0.92261 0.93759 1.22365 1.01257 0.98307 0.98554 1.20719 1.34103 1.12365 0.87978 0.90504 1.24975 0.94673 0.97311 0.95776 1.69948 1.48132 1.35928 0.98739 0.87290 0.79329 0.85557 0.75988 1.21348 1.23400 1.17522 1.21526 0.98673 0.95837 0.81813 1.46213 1.53394 1.32086 1.05827 1.20146 0.81357 0.85180 0.84328 1.90712 1.37160 1.25794 1.86589 1.22285 0.99292 0.96156 0.85956 1.88074 1.73757 1.53097 1.12086 1.23092 0.94033 0.96296 0.84396 1.23076 0.97585 1.02303 0.95675 1.22326 0.96531 1.01618 0.95620 1.22082 0.94885 1.02010 0.97017 1.22176 0.97716 1.03065 0.93111 0.95957 0.92496 0.93355 0.92740 0.94014 0.95195 0.92530 0.91900 0.91792 0.76958 0.90625 0.90619 0.91497 0.91420 0.90178 0.91378 0.91562 0.91463 0.91652 0.90159 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 7.53 37.16 0.28 -2.57 16 2 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 3 C -0.15 -2.95 7.52 37.16 0.28 -2.67 16 4 C -0.51 -13.77 8.62 -34.44 -0.30 -14.07 16 5 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 6 C 0.08 2.09 5.32 -17.82 -0.09 1.99 16 7 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 8 Si 0.89 20.91 22.79 -169.99 -3.87 17.03 16 9 H -0.29 -6.73 7.10 56.52 0.40 -6.32 16 10 H -0.31 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.25 -5.31 4.65 56.52 0.26 -5.04 16 12 C 0.14 2.88 4.49 -4.04 -0.02 2.86 16 13 N -0.72 -11.70 5.00 -60.30 -0.30 -12.00 16 14 C 0.51 8.47 7.91 -10.99 -0.09 8.39 16 15 O -0.53 -11.33 16.50 -14.35 -0.24 -11.57 16 16 C 0.04 0.53 6.27 36.00 0.23 0.75 16 17 O -0.35 -4.88 9.59 -55.14 -0.53 -5.41 16 18 C 0.08 0.80 3.33 -25.07 -0.08 0.71 16 19 C -0.15 -1.30 6.65 -24.55 -0.16 -1.47 16 20 C -0.12 -0.86 6.84 -24.88 -0.17 -1.03 16 21 C -0.12 -0.88 6.80 -25.61 -0.17 -1.05 16 22 C -0.12 -1.11 6.56 -25.61 -0.17 -1.28 16 23 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 24 H 0.06 1.22 4.30 -51.93 -0.22 0.99 16 25 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 28 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.40 5.35 6.26 -40.82 -0.26 5.10 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 35 H 0.07 0.55 7.84 -51.93 -0.41 0.15 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -32.14 329.81 -7.08 -39.22 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.33 Total: 2.48 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.55 Total: -8.89 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.47 Total: -37.84 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.77 Total: -16.98 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -3.87 Total: 17.03 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.14 -7.08 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.477 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds