Wall clock time and date at job start Mon Mar 30 2020 01:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.47267 * 2 1 4 4 C 1.50694 * 109.47507 * 240.00123 * 2 1 3 5 5 H 1.07999 * 119.99941 * 241.35233 * 4 2 1 6 6 C 1.37873 * 120.00295 * 61.34304 * 4 2 1 7 7 N 1.31515 * 120.00638 * 193.97745 * 6 4 2 8 8 Si 1.86800 * 119.99869 * 13.98240 * 6 4 2 9 9 H 1.48501 * 109.47432 * 84.54601 * 8 6 4 10 10 H 1.48496 * 109.47555 * 204.54799 * 8 6 4 11 11 H 1.48500 * 109.46947 * 324.54791 * 8 6 4 12 12 C 1.53004 * 109.47160 * 119.99830 * 2 1 3 13 13 N 1.46506 * 109.47056 * 300.00178 * 12 2 1 14 14 C 1.34779 * 119.99774 * 179.97438 * 13 12 2 15 15 O 1.21271 * 120.00076 * 359.97438 * 14 13 12 16 16 C 1.50695 * 119.99561 * 180.02562 * 14 13 12 17 17 O 1.42898 * 109.46834 * 180.02562 * 16 14 13 18 18 C 1.42906 * 114.00030 * 180.02562 * 17 16 14 19 19 C 1.54886 * 110.48913 * 93.23785 * 18 17 16 20 20 C 1.55243 * 102.58719 * 156.67612 * 19 18 17 21 21 C 1.54259 * 104.23207 * 322.08407 * 20 19 18 22 22 C 1.53878 * 106.60148 * 23.61265 * 21 20 19 23 23 H 1.09003 * 109.46962 * 309.36810 * 1 2 3 24 24 H 1.09001 * 109.47067 * 69.36726 * 1 2 3 25 25 H 1.08995 * 109.47026 * 189.36710 * 1 2 3 26 26 H 1.08993 * 109.47041 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.46583 * 300.00160 * 3 2 1 28 28 H 1.08997 * 109.46569 * 59.99912 * 3 2 1 29 29 H 0.96995 * 120.00540 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47268 * 180.02562 * 12 2 1 31 31 H 1.08995 * 109.46823 * 59.99579 * 12 2 1 32 32 H 0.97002 * 119.99916 * 359.97438 * 13 12 2 33 33 H 1.08995 * 109.47620 * 60.00201 * 16 14 13 34 34 H 1.09004 * 109.47406 * 299.99989 * 16 14 13 35 35 H 1.08996 * 110.43410 * 330.69385 * 18 17 16 36 36 H 1.08996 * 110.75588 * 275.07036 * 19 18 17 37 37 H 1.08998 * 110.75757 * 38.44090 * 19 18 17 38 38 H 1.09003 * 110.46330 * 203.39311 * 20 19 18 39 39 H 1.09000 * 110.58031 * 80.83228 * 20 19 18 40 40 H 1.09004 * 110.03388 * 264.32669 * 21 20 19 41 41 H 1.08997 * 110.07407 * 142.91588 * 21 20 19 42 42 H 1.09001 * 110.02883 * 240.71885 * 22 21 20 43 43 H 1.08994 * 110.07467 * 119.30277 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6352 -1.6010 -1.1314 6 6 1.7224 -0.2234 -2.4825 7 7 1.9159 -0.9725 -3.5460 8 14 1.0277 1.5006 -2.6684 9 1 2.1417 2.4817 -2.7084 10 1 0.2471 1.5865 -3.9288 11 1 0.1418 1.8042 -1.5159 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8768 -0.4913 3.6696 15 8 2.5733 -1.4779 3.7809 16 6 1.3740 0.2188 4.9000 17 8 1.8504 -0.4548 6.0667 18 6 1.4278 0.1409 7.2950 19 6 0.1261 -0.5278 7.8023 20 6 0.1645 -0.2309 9.3256 21 6 1.6541 -0.3701 9.7016 22 6 2.4574 -0.1336 8.4106 23 1 -0.3633 0.6519 0.7945 24 1 -0.3633 0.3621 -0.9618 25 1 -0.3633 -1.0139 0.1673 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6975 -0.6301 -4.4268 30 1 3.1300 -0.7208 1.2495 31 1 1.6766 -1.7488 1.2493 32 1 0.9942 0.7583 2.3564 33 1 0.2840 0.2187 4.8996 34 1 1.7372 1.2465 4.9004 35 1 1.2809 1.2134 7.1671 36 1 -0.7486 -0.0713 7.3391 37 1 0.1461 -1.6018 7.6173 38 1 -0.4363 -0.9587 9.8710 39 1 -0.1870 0.7809 9.5277 40 1 1.8504 -1.3713 10.0854 41 1 1.9223 0.3756 10.4500 42 1 3.0434 -1.0201 8.1679 43 1 3.1152 0.7270 8.5316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457986354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:17 Heat of formation + Delta-G solvation = -107.082816 kcal Electronic energy + Delta-G solvation = -20889.850169 eV Core-core repulsion = 17741.191552 eV Total energy + Delta-G solvation = -3148.658618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.93580 -39.68339 -38.38057 -36.74085 -35.01722 -33.47671 -30.13883 -29.57423 -28.22334 -27.99117 -27.17816 -26.26156 -21.77410 -21.65239 -21.15800 -20.96007 -18.46541 -18.13211 -17.97319 -17.08200 -16.94720 -16.50160 -16.37284 -15.68296 -15.33719 -14.96106 -14.82009 -14.50788 -14.29705 -14.20392 -13.99024 -13.74273 -13.41366 -13.10069 -12.92743 -12.42440 -12.39177 -12.16327 -12.07374 -11.95576 -11.94477 -11.76036 -11.52922 -11.31100 -11.09571 -10.82163 -10.61749 -10.50047 -10.38084 -10.02615 -8.30185 -6.32551 1.37060 1.38853 1.52205 1.63005 1.91049 2.35353 3.04309 3.07096 3.65633 3.71911 3.83277 4.05437 4.08433 4.22100 4.27888 4.34203 4.36564 4.41985 4.54524 4.59728 4.68608 4.76161 4.79651 4.83287 4.86911 4.94471 4.96727 5.06901 5.08093 5.17797 5.19451 5.21774 5.29909 5.42105 5.47674 5.53333 5.72082 5.80576 6.22676 6.30070 6.65116 6.73103 7.30487 7.32724 8.87298 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.048290 B = 0.003245 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.689757 B = 8626.509612 C = 8803.961050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.521 4.521 5 H 0.024 0.976 6 C 0.014 3.986 7 N -0.948 5.948 8 Si 0.947 3.053 9 H -0.281 1.281 10 H -0.316 1.316 11 H -0.199 1.199 12 C 0.158 3.842 13 N -0.706 5.706 14 C 0.502 3.498 15 O -0.585 6.585 16 C 0.051 3.949 17 O -0.390 6.390 18 C 0.074 3.926 19 C -0.150 4.150 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.127 4.127 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.265 0.735 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.415 0.585 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.106 10.690 25.301 28.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.559 4.559 5 H 0.042 0.958 6 C -0.183 4.183 7 N -0.588 5.588 8 Si 0.776 3.224 9 H -0.209 1.209 10 H -0.246 1.246 11 H -0.123 1.123 12 C 0.034 3.966 13 N -0.361 5.361 14 C 0.289 3.711 15 O -0.464 6.464 16 C -0.028 4.028 17 O -0.309 6.309 18 C 0.017 3.983 19 C -0.188 4.188 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.165 4.165 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.253 0.747 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.498 9.793 25.217 27.822 hybrid contribution 0.008 0.308 -1.201 1.240 sum -6.490 10.102 24.016 26.850 Atomic orbital electron populations 1.22228 0.95832 1.00705 1.01123 1.18653 0.93953 0.93202 0.91481 1.22303 1.00984 0.96623 1.00546 1.21058 1.33008 1.11097 0.90774 0.95761 1.25917 0.95374 1.01885 0.95107 1.70120 1.50726 1.38454 0.99464 0.86296 0.79452 0.79531 0.77093 1.20857 1.24574 1.12268 1.21026 0.97275 0.94974 0.83335 1.45909 1.53305 1.32263 1.04580 1.21107 0.80024 0.84432 0.85571 1.90696 1.39779 1.28550 1.87401 1.22343 1.00925 0.96497 0.83084 1.88044 1.74675 1.54627 1.13578 1.23362 0.94445 0.97591 0.82951 1.23076 0.97634 1.00921 0.97122 1.22333 0.96256 1.02762 0.94258 1.22090 0.94966 1.02344 0.96420 1.22232 0.97939 1.02326 0.94000 0.91045 0.93548 0.94215 0.93600 0.94583 0.90279 0.92655 0.94161 0.94400 0.74672 0.87322 0.86975 0.88927 0.90022 0.92462 0.90876 0.89860 0.91944 0.89994 0.92772 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 7.53 71.98 0.54 -4.65 16 2 C 0.03 1.18 0.50 -52.93 -0.03 1.16 16 3 C -0.15 -5.34 7.52 71.99 0.54 -4.79 16 4 C -0.52 -28.92 8.62 25.60 0.22 -28.70 16 5 H 0.02 1.54 7.99 -2.91 -0.02 1.52 16 6 C 0.01 0.81 5.32 84.65 0.45 1.26 16 7 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 8 Si 0.95 42.16 22.79 68.60 1.56 43.72 16 9 H -0.28 -12.26 7.10 99.48 0.71 -11.55 16 10 H -0.32 -14.58 7.11 99.48 0.71 -13.87 16 11 H -0.20 -7.30 4.65 99.48 0.46 -6.84 16 12 C 0.16 6.34 4.49 86.38 0.39 6.73 16 13 N -0.71 -20.96 5.00 -463.07 -2.32 -23.28 16 14 C 0.50 15.92 7.91 87.66 0.69 16.61 16 15 O -0.58 -25.55 16.50 16.04 0.26 -25.28 16 16 C 0.05 1.05 6.27 71.23 0.45 1.49 16 17 O -0.39 -10.10 9.59 -129.94 -1.25 -11.34 16 18 C 0.07 1.26 3.33 31.67 0.11 1.37 16 19 C -0.15 -2.26 6.65 32.01 0.21 -2.04 16 20 C -0.12 -1.31 6.84 31.79 0.22 -1.09 16 21 C -0.12 -1.48 6.80 31.32 0.21 -1.27 16 22 C -0.13 -2.11 6.56 31.32 0.21 -1.91 16 23 H 0.07 1.92 7.13 -2.39 -0.02 1.91 16 24 H 0.05 1.80 4.30 -2.39 -0.01 1.79 16 25 H 0.04 1.50 8.12 -2.39 -0.02 1.48 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.04 1.36 2.25 -2.39 -0.01 1.35 16 28 H 0.08 2.08 6.86 -2.39 -0.02 2.06 16 29 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.42 8.98 6.26 -92.71 -0.58 8.40 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.11 1.54 8.11 -2.38 -0.02 1.52 16 35 H 0.09 1.10 7.84 -2.39 -0.02 1.09 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 42 H 0.05 1.16 8.07 -2.39 -0.02 1.14 16 43 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -76.37 329.81 2.94 -73.43 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.16 Total: 17.49 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: 4.21 Total: -15.84 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -2.02 Total: -82.17 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.98 Total: -36.63 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.56 Total: 43.72 kcal Total: -76.37 2.94 -73.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.652 kcal (2) G-P(sol) polarization free energy of solvation -76.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds