Wall clock time and date at job start Mon Mar 30 2020 01:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46922 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00194 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.53001 * 109.46989 * 240.00202 * 2 1 3 13 13 N 1.46499 * 109.47073 * 59.99821 * 12 2 1 14 14 C 1.34784 * 119.99897 * 179.97438 * 13 12 2 15 15 O 1.21283 * 119.99641 * 0.02562 * 14 13 12 16 16 C 1.50694 * 119.99992 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.47224 * 60.00790 * 16 14 13 18 18 C 1.53000 * 109.47174 * 300.00429 * 16 14 13 19 19 C 1.53000 * 109.47251 * 180.02562 * 18 16 14 20 20 C 1.53001 * 109.47355 * 59.99941 * 19 18 16 21 21 C 1.53000 * 109.46989 * 300.00219 * 20 19 18 22 22 H 1.08995 * 109.47548 * 180.02562 * 21 20 19 23 23 O 1.42900 * 109.47077 * 300.00138 * 21 20 19 24 24 C 1.53000 * 109.47251 * 59.99717 * 21 20 19 25 25 H 1.08997 * 109.47359 * 300.00345 * 1 2 3 26 26 H 1.09007 * 109.47356 * 59.99868 * 1 2 3 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47089 * 299.99981 * 3 2 1 30 30 H 1.08995 * 109.47131 * 60.00150 * 3 2 1 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46926 * 179.97438 * 12 2 1 33 33 H 1.08998 * 109.46837 * 300.00010 * 12 2 1 34 34 H 0.96991 * 120.00466 * 0.02562 * 13 12 2 35 35 H 1.09000 * 109.47156 * 299.99787 * 18 16 14 36 36 H 1.08995 * 109.47095 * 60.00066 * 18 16 14 37 37 H 1.09000 * 109.46641 * 299.99826 * 19 18 16 38 38 H 1.08994 * 109.47288 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.47385 * 180.02562 * 20 19 18 40 40 H 1.08990 * 109.46991 * 59.99956 * 20 19 18 41 41 H 0.96695 * 113.99898 * 299.99609 * 23 21 20 42 42 H 1.08999 * 109.47677 * 179.97438 * 24 21 20 43 43 H 1.09005 * 109.47033 * 60.00412 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.8269 -0.4200 5.2204 10 1 1.8258 -2.5203 4.0076 11 1 3.8063 -1.1210 4.0081 12 6 2.0400 -0.7212 -1.2493 13 7 1.5516 -0.0306 -2.4454 14 6 1.8776 -0.4907 -3.6696 15 8 2.5749 -1.4768 -3.7808 16 6 1.3757 0.2200 -4.9000 17 1 1.7392 1.2476 -4.8997 18 6 -0.1543 0.2201 -4.9004 19 6 -0.6639 0.9412 -6.1500 20 6 -0.1536 0.2197 -7.3990 21 6 1.3764 0.2195 -7.3985 22 1 1.7400 -0.2940 -8.2885 23 8 1.8529 1.5668 -7.3985 24 6 1.8860 -0.5015 -6.1490 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.7089 1.1613 3.4844 32 1 3.1300 -0.7208 -1.2495 33 1 1.6766 -1.7488 -1.2493 34 1 0.9943 0.7582 -2.3564 35 1 -0.5177 -0.8075 -4.9009 36 1 -0.5178 0.7338 -4.0105 37 1 -0.3004 1.9688 -6.1500 38 1 -1.7538 0.9417 -6.1501 39 1 -0.5162 0.7336 -8.2891 40 1 -0.5170 -0.8079 -7.3989 41 1 1.5679 2.0847 -8.1637 42 1 2.9760 -0.5020 -6.1488 43 1 1.5226 -1.5292 -6.1489 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457989328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:48 Heat of formation + Delta-G solvation = -119.952387 kcal Electronic energy + Delta-G solvation = -21629.306658 eV Core-core repulsion = 18480.089974 eV Total energy + Delta-G solvation = -3149.216684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.04057 -38.34609 -36.31977 -35.06096 -33.22277 -31.25595 -30.66912 -29.77171 -25.72369 -25.70274 -25.05855 -23.19142 -22.52430 -20.33221 -19.53351 -18.74448 -17.24817 -16.78142 -15.90159 -15.56395 -14.96532 -14.91213 -14.62033 -14.34002 -14.13650 -13.36656 -13.10171 -12.87400 -12.64714 -12.43305 -12.40241 -12.14534 -11.81549 -11.35470 -11.27065 -11.15587 -10.97543 -10.84917 -10.78474 -10.71352 -10.42042 -10.35514 -10.18089 -9.83848 -9.60665 -9.43800 -9.09789 -8.76405 -8.41160 -8.25162 -6.00066 -4.10075 3.14695 3.31437 3.35545 3.39155 3.81474 4.10331 4.41728 4.55094 4.61951 4.75001 5.06706 5.09334 5.25982 5.26491 5.27196 5.35643 5.47376 5.62385 5.77261 5.86608 5.94171 6.05548 6.09442 6.22798 6.29370 6.33744 6.37501 6.54186 6.82269 6.85271 6.97224 7.04673 7.10213 7.38412 7.49216 7.58079 7.71254 8.03215 8.11445 8.20539 8.41133 8.79153 8.90830 9.55505 11.01262 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040487 B = 0.003905 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.418606 B = 7169.440605 C = 7405.696728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.716 5.716 14 C 0.507 3.493 15 O -0.556 6.556 16 C -0.102 4.102 17 H 0.101 0.899 18 C -0.111 4.111 19 C -0.113 4.113 20 C -0.153 4.153 21 C 0.104 3.896 22 H 0.055 0.945 23 O -0.562 6.562 24 C -0.090 4.090 25 H 0.085 0.915 26 H 0.006 0.994 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.006 0.994 30 H 0.085 0.915 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.397 0.603 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.373 0.627 42 H 0.075 0.925 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.110 2.623 -18.241 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.366 5.366 14 C 0.292 3.708 15 O -0.435 6.435 16 C -0.123 4.123 17 H 0.119 0.881 18 C -0.149 4.149 19 C -0.150 4.150 20 C -0.191 4.191 21 C 0.046 3.954 22 H 0.073 0.927 23 O -0.367 6.367 24 C -0.128 4.128 25 H 0.104 0.896 26 H 0.025 0.975 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.025 0.975 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.232 0.768 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.219 0.781 42 H 0.094 0.906 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.417 1.827 -17.566 17.988 hybrid contribution -0.229 0.060 0.408 0.471 sum -3.646 1.887 -17.158 17.642 Atomic orbital electron populations 1.21819 0.97776 0.99100 1.00031 1.18351 0.92786 0.92763 0.90609 1.21824 0.98573 0.98355 1.00054 1.20957 1.31491 1.12087 0.89941 0.92538 1.24878 0.94869 0.94922 0.98813 1.69797 1.36672 1.22727 1.23281 0.86635 0.79244 0.79786 0.82198 1.21334 1.20300 1.20294 1.21695 0.98072 0.95741 0.83623 1.46325 1.52534 1.31717 1.06060 1.20609 0.80492 0.84699 0.84967 1.90645 1.38881 1.26919 1.87102 1.21231 0.96613 1.01458 0.93021 0.88070 1.21527 0.93383 1.01440 0.98543 1.21428 0.99921 0.99977 0.93699 1.22270 0.96486 1.01769 0.98560 1.21842 0.92439 0.83155 0.98006 0.92707 1.86567 1.76860 1.23864 1.49450 1.21330 1.01852 0.98417 0.91194 0.89636 0.97522 0.95506 0.95479 0.97493 0.89621 0.92981 0.92865 0.92862 0.76763 0.91553 0.91157 0.91127 0.91861 0.91885 0.90967 0.78082 0.90642 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 4 C -0.51 -13.43 8.01 -34.44 -0.28 -13.70 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.76 9.35 55.43 0.52 -23.24 16 8 Si 0.89 20.90 29.54 -169.99 -5.02 15.87 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 C 0.13 2.87 4.50 -4.04 -0.02 2.85 16 13 N -0.72 -13.14 4.85 -60.29 -0.29 -13.43 16 14 C 0.51 9.05 7.15 -10.98 -0.08 8.97 16 15 O -0.56 -11.92 15.98 5.55 0.09 -11.83 16 16 C -0.10 -1.38 2.38 -91.77 -0.22 -1.60 16 17 H 0.10 1.37 7.68 -51.93 -0.40 0.97 16 18 C -0.11 -1.27 5.10 -26.73 -0.14 -1.41 16 19 C -0.11 -1.02 5.78 -26.73 -0.15 -1.18 16 20 C -0.15 -1.23 5.64 -26.73 -0.15 -1.38 16 21 C 0.10 0.99 3.77 -26.73 -0.10 0.88 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 O -0.56 -5.45 11.97 -35.23 -0.42 -5.87 16 24 C -0.09 -1.13 4.23 -26.73 -0.11 -1.25 16 25 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 26 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 30 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 31 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.40 6.63 5.58 -40.82 -0.23 6.41 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.80 7.56 -51.93 -0.39 0.41 16 37 H 0.07 0.65 7.68 -51.93 -0.40 0.25 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.37 2.00 9.08 45.56 0.41 2.41 16 42 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -29.68 330.37 -7.50 -37.18 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.53 Total: 6.58 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.82 Total: -10.24 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.23 Total: -36.67 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.33 Total: -17.70 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.68 -7.50 -37.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.768 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds