Wall clock time and date at job start Mon Mar 30 2020 01:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00177 * 2 1 3 5 5 H 1.07995 * 120.00280 * 239.99993 * 4 2 1 6 6 C 1.37880 * 119.99788 * 59.99926 * 4 2 1 7 7 N 1.31511 * 120.00327 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99600 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47356 * 60.00144 * 8 6 4 10 10 H 1.48508 * 109.46668 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.46969 * 299.99834 * 8 6 4 12 12 C 1.52997 * 109.47415 * 120.00140 * 2 1 3 13 13 N 1.46496 * 109.47194 * 300.00058 * 12 2 1 14 14 C 1.34777 * 120.00271 * 180.02562 * 13 12 2 15 15 O 1.21278 * 119.99854 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00161 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.46980 * 59.99654 * 16 14 13 18 18 C 1.52996 * 109.46946 * 299.99543 * 16 14 13 19 19 C 1.53002 * 109.46891 * 179.97438 * 18 16 14 20 20 C 1.52997 * 109.46978 * 60.00410 * 19 18 16 21 21 C 1.53006 * 109.47164 * 299.99874 * 20 19 18 22 22 H 1.08998 * 109.46505 * 299.99708 * 21 20 19 23 23 O 1.42895 * 109.47000 * 180.02562 * 21 20 19 24 24 C 1.52997 * 109.47127 * 59.99836 * 21 20 19 25 25 H 1.09000 * 109.46986 * 299.99742 * 1 2 3 26 26 H 1.08996 * 109.47407 * 59.99513 * 1 2 3 27 27 H 1.09002 * 109.47070 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46997 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47380 * 299.99696 * 3 2 1 30 30 H 1.08999 * 109.47631 * 60.00790 * 3 2 1 31 31 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47624 * 179.97438 * 12 2 1 33 33 H 1.09002 * 109.47045 * 59.99931 * 12 2 1 34 34 H 0.97005 * 120.00266 * 359.97438 * 13 12 2 35 35 H 1.08992 * 109.47554 * 299.99877 * 18 16 14 36 36 H 1.09004 * 109.47108 * 60.00127 * 18 16 14 37 37 H 1.09002 * 109.47097 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.47142 * 300.00176 * 19 18 16 39 39 H 1.09001 * 109.47375 * 59.99908 * 20 19 18 40 40 H 1.09000 * 109.47140 * 179.97438 * 20 19 18 41 41 H 0.96698 * 114.00355 * 60.00121 * 23 21 20 42 42 H 1.09002 * 109.47153 * 180.02562 * 24 21 20 43 43 H 1.09001 * 109.46832 * 60.00321 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8257 -2.5201 -4.0079 10 1 1.8268 -0.4197 -5.2205 11 1 3.8062 -1.1208 -4.0083 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8779 -0.4909 3.6695 15 8 2.5751 -1.4769 3.7807 16 6 1.3760 0.2198 4.9000 17 1 0.2860 0.2199 4.9004 18 6 1.8861 1.6623 4.8994 19 6 1.3761 2.3840 6.1484 20 6 1.8861 1.6632 7.3979 21 6 1.3760 0.2206 7.3984 22 1 0.2860 0.2208 7.3985 23 8 1.8518 -0.4524 8.5657 24 6 1.8859 -0.5011 6.1495 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 0.7088 1.1615 -3.4844 32 1 3.1301 -0.7217 1.2490 33 1 1.6768 -1.7489 1.2492 34 1 0.9944 0.7582 2.3565 35 1 2.9760 1.6622 4.8991 36 1 1.5225 2.1759 4.0095 37 1 1.7391 3.4118 6.1479 38 1 0.2861 2.3840 6.1484 39 1 2.9761 1.6631 7.3979 40 1 1.5231 2.1776 8.2877 41 1 1.5662 -0.0485 9.3966 42 1 1.5222 -1.5286 6.1496 43 1 2.9760 -0.5011 6.1495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457989329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:53 Heat of formation + Delta-G solvation = -121.458220 kcal Electronic energy + Delta-G solvation = -21471.869355 eV Core-core repulsion = 18322.587373 eV Total energy + Delta-G solvation = -3149.281982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.05130 -38.30537 -36.38456 -35.54450 -33.27447 -31.32231 -30.69474 -29.54385 -25.76291 -25.73610 -25.09245 -23.25505 -22.44632 -20.47556 -19.65875 -18.79017 -17.62102 -16.70973 -15.84727 -15.46588 -15.04557 -14.90808 -14.67579 -14.46506 -14.04982 -13.75263 -13.04342 -12.94440 -12.79687 -12.65166 -12.27858 -12.17442 -11.76248 -11.39093 -11.27872 -11.19198 -11.01511 -10.84414 -10.79788 -10.73040 -10.55126 -10.38866 -10.20537 -9.96930 -9.64013 -9.48926 -9.16736 -8.79626 -8.44499 -8.29739 -6.02480 -4.12569 3.06364 3.30046 3.34171 3.37720 3.61396 4.09857 4.39759 4.51671 4.56934 4.81214 4.96209 4.99143 5.11347 5.21825 5.24216 5.29545 5.39453 5.48701 5.74623 5.84826 5.85866 5.97286 6.00771 6.19751 6.24264 6.30647 6.33607 6.50590 6.78685 6.81218 6.93187 7.01188 7.04829 7.34928 7.46264 7.54808 7.68866 8.00281 8.06620 8.15892 8.38296 8.72920 8.88158 9.53247 10.98861 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.042412 B = 0.003772 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.036956 B = 7422.087200 C = 7773.959536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.715 5.715 14 C 0.508 3.492 15 O -0.551 6.551 16 C -0.104 4.104 17 H 0.095 0.905 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.153 4.153 21 C 0.105 3.895 22 H 0.054 0.946 23 O -0.567 6.567 24 C -0.091 4.091 25 H 0.006 0.994 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.397 0.603 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.375 0.625 42 H 0.076 0.924 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 5.269 17.233 18.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.366 5.366 14 C 0.293 3.707 15 O -0.429 6.429 16 C -0.126 4.126 17 H 0.113 0.887 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.190 4.190 21 C 0.046 3.954 22 H 0.072 0.928 23 O -0.372 6.372 24 C -0.129 4.129 25 H 0.025 0.975 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.232 0.768 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.221 0.779 42 H 0.094 0.906 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.670 4.284 16.668 17.291 hybrid contribution -0.243 0.335 -0.548 0.687 sum -1.913 4.619 16.120 16.878 Atomic orbital electron populations 1.21826 0.97777 0.99162 1.00035 1.18350 0.92778 0.92758 0.90590 1.21821 0.98565 0.98342 1.00026 1.20958 1.31534 1.12119 0.89931 0.92506 1.24875 0.94847 0.94915 0.98829 1.69789 1.36656 1.22728 1.23322 0.86633 0.79249 0.79808 0.82168 1.20273 1.21330 1.20280 1.21710 0.98124 0.95796 0.83513 1.46315 1.52565 1.31713 1.06005 1.20410 0.80789 0.84677 0.84783 1.90672 1.38512 1.26762 1.86970 1.21252 1.01885 0.95909 0.93508 0.88699 1.21578 1.01770 0.93294 0.98578 1.21469 1.00932 0.99102 0.93719 1.22299 1.02246 0.96095 0.98406 1.21830 0.96840 0.90766 0.85939 0.92757 1.86547 1.77835 1.56920 1.15876 1.21207 1.02431 0.99302 0.89955 0.97532 0.89613 0.95464 0.95474 0.89617 0.97537 0.92959 0.92781 0.92789 0.76756 0.91083 0.90828 0.91233 0.91573 0.90985 0.91848 0.77863 0.90563 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 4 C -0.51 -13.29 8.01 -34.44 -0.28 -13.57 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.51 9.35 55.43 0.52 -22.99 16 8 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.13 2.80 4.50 -4.05 -0.02 2.78 16 13 N -0.72 -12.58 4.85 -60.30 -0.29 -12.88 16 14 C 0.51 8.74 7.15 -10.98 -0.08 8.66 16 15 O -0.55 -11.68 15.98 5.56 0.09 -11.59 16 16 C -0.10 -1.30 2.52 -91.77 -0.23 -1.53 16 17 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 18 C -0.11 -1.21 5.10 -26.73 -0.14 -1.35 16 19 C -0.11 -0.94 5.92 -26.73 -0.16 -1.10 16 20 C -0.15 -1.27 5.54 -26.73 -0.15 -1.42 16 21 C 0.10 1.04 3.47 -26.73 -0.09 0.95 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 O -0.57 -5.88 13.32 -35.23 -0.47 -6.35 16 24 C -0.09 -1.17 4.15 -26.73 -0.11 -1.28 16 25 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 26 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 31 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.40 6.25 5.58 -40.82 -0.23 6.02 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.76 7.56 -51.93 -0.39 0.36 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.37 2.09 9.08 45.56 0.41 2.51 16 42 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 43 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -29.78 332.45 -7.57 -37.35 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.58 Total: 5.93 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -0.82 Total: -10.20 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.23 Total: -35.87 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.38 Total: -17.94 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.78 -7.57 -37.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457989329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.108 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds