Wall clock time and date at job start Mon Mar 30 2020 01:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47452 * 2 1 4 4 C 1.52998 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47199 * 54.85092 * 4 3 2 6 6 O 1.42901 * 109.46866 * 294.85033 * 4 3 2 7 7 C 1.42903 * 113.99739 * 150.00154 * 6 4 3 8 8 C 1.50706 * 109.46830 * 174.85316 * 4 3 2 9 9 O 1.21280 * 119.99796 * 112.43912 * 8 4 3 10 10 N 1.34768 * 119.99793 * 292.42894 * 8 4 3 11 11 C 1.46926 * 120.63546 * 355.43417 * 10 8 4 12 12 C 1.53617 * 108.54636 * 126.36539 * 11 10 8 13 13 C 1.53036 * 109.24224 * 54.85680 * 12 11 10 14 14 C 1.50708 * 109.45038 * 178.49682 * 13 12 11 15 15 H 1.08005 * 119.99640 * 120.06129 * 14 13 12 16 16 C 1.37872 * 119.99967 * 300.05904 * 14 13 12 17 17 N 1.31514 * 119.99959 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99985 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47168 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46958 * 120.00386 * 18 16 14 21 21 H 1.48495 * 109.47195 * 240.00505 * 18 16 14 22 22 C 1.53043 * 109.54016 * 298.51153 * 13 12 11 23 23 C 1.46932 * 120.62638 * 175.71116 * 10 8 4 24 24 H 1.08990 * 109.47592 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47017 * 300.00538 * 1 2 3 26 26 H 1.09005 * 109.46750 * 59.99562 * 1 2 3 27 27 H 1.09000 * 109.46503 * 239.99952 * 2 1 3 28 28 H 1.08995 * 109.46804 * 120.00344 * 2 1 3 29 29 H 1.09002 * 109.46754 * 59.99921 * 3 2 1 30 30 H 1.09007 * 109.46938 * 300.00480 * 3 2 1 31 31 H 1.09000 * 109.46832 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47171 * 300.00065 * 7 6 4 33 33 H 1.08996 * 109.46841 * 59.99852 * 7 6 4 34 34 H 1.09005 * 109.58210 * 246.20401 * 11 10 8 35 35 H 1.09002 * 109.58496 * 6.62204 * 11 10 8 36 36 H 1.08996 * 109.63478 * 294.86714 * 12 11 10 37 37 H 1.08997 * 109.43230 * 174.72177 * 12 11 10 38 38 H 1.09003 * 109.46414 * 58.53197 * 13 12 11 39 39 H 0.96997 * 120.00009 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.49860 * 301.41463 * 22 13 12 41 41 H 1.08994 * 109.52544 * 181.33233 * 22 13 12 42 42 H 1.08992 * 109.58764 * 353.37358 * 23 10 8 43 43 H 1.09002 * 109.58852 * 113.66202 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8509 -0.8412 6 8 4.0468 0.8760 1.2216 7 6 5.3064 0.2117 1.1020 8 6 4.0724 2.8575 -0.1281 9 8 4.6529 3.3808 0.7993 10 7 3.8766 3.5415 -1.2727 11 6 3.2649 2.8899 -2.4390 12 6 2.0663 3.7342 -2.8975 13 6 2.5288 5.1707 -3.1514 14 6 1.3641 5.9946 -3.6370 15 1 1.0430 6.8594 -3.0754 16 6 0.7084 5.6442 -4.7981 17 7 1.0992 4.5908 -5.4817 18 14 -0.7357 6.6650 -5.3997 19 1 -0.9742 7.7883 -4.4581 20 1 -0.4315 7.2063 -6.7486 21 1 -1.9492 5.8121 -5.4707 22 6 3.0714 5.7709 -1.8523 23 6 4.2765 4.9513 -1.3801 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.5985 -0.1908 2.0719 32 1 5.2210 -0.6022 0.3820 33 1 6.0602 0.9211 0.7606 34 1 3.9963 2.8209 -3.2443 35 1 2.9262 1.8911 -2.1636 36 1 1.2985 3.7306 -2.1239 37 1 1.6585 3.3154 -3.8175 38 1 3.3141 5.1712 -3.9074 39 1 0.6377 4.3441 -6.2984 40 1 2.2942 5.7481 -1.0885 41 1 3.3789 6.8017 -2.0278 42 1 4.6053 5.3130 -0.4059 43 1 5.0902 5.0466 -2.0990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567014596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:21 Heat of formation + Delta-G solvation = -101.048768 kcal Electronic energy + Delta-G solvation = -22085.521443 eV Core-core repulsion = 18937.124481 eV Total energy + Delta-G solvation = -3148.396962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13889 -37.78599 -36.52727 -34.79532 -33.48384 -31.50967 -30.29683 -29.43000 -26.46880 -26.25389 -24.47251 -22.76455 -22.21078 -21.12629 -20.00063 -18.34895 -17.38421 -16.60489 -16.23154 -15.63113 -15.20452 -14.78711 -14.56749 -14.27878 -14.18174 -13.35290 -13.29131 -13.20741 -12.84211 -12.75513 -12.38309 -12.05375 -11.96628 -11.63418 -11.42522 -11.29629 -11.07123 -10.98946 -10.89028 -10.65326 -10.51452 -10.43596 -10.38058 -10.11182 -9.67501 -9.20731 -9.08769 -8.83604 -8.41777 -8.02501 -6.06901 -4.12847 2.89848 3.24897 3.31901 3.33786 3.38025 3.86101 4.38241 4.66922 4.89210 4.92411 5.13698 5.19747 5.22716 5.33193 5.40379 5.51810 5.62360 5.65149 5.71625 5.77194 5.86835 5.89712 5.95572 6.02898 6.12850 6.15971 6.20643 6.24735 6.38305 6.42956 6.63161 6.84729 6.98000 7.05980 7.12301 7.24291 7.62780 7.87639 7.89219 7.99964 8.36435 8.54452 8.90859 9.52683 10.98649 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.005487 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.411647 B = 5101.593205 C = 5967.807987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.121 4.121 4 C 0.078 3.922 5 H 0.082 0.918 6 O -0.358 6.358 7 C 0.030 3.970 8 C 0.487 3.513 9 O -0.545 6.545 10 N -0.598 5.598 11 C 0.095 3.905 12 C -0.123 4.123 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.055 0.945 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.123 4.123 23 C 0.111 3.889 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.105 0.895 38 H 0.027 0.973 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 -10.007 7.117 12.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.159 4.159 4 C 0.016 3.984 5 H 0.100 0.900 6 O -0.275 6.275 7 C -0.066 4.066 8 C 0.274 3.726 9 O -0.423 6.423 10 N -0.332 5.332 11 C -0.027 4.027 12 C -0.161 4.161 13 C 0.030 3.970 14 C -0.549 4.549 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.161 4.161 23 C -0.011 4.011 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.123 0.877 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.746 -9.817 7.625 12.982 hybrid contribution -0.596 0.516 -0.771 1.103 sum 3.150 -9.301 6.854 11.975 Atomic orbital electron populations 1.21768 0.95543 1.01457 1.02262 1.21458 0.96071 0.95881 1.02174 1.21868 0.90708 0.98658 1.04620 1.22089 0.96349 0.91488 0.88457 0.90031 1.87964 1.36398 1.72358 1.30817 1.22811 0.85854 0.95607 1.02351 1.21258 0.79884 0.88988 0.82439 1.90640 1.42457 1.70302 1.38925 1.48291 1.60070 1.12235 1.12629 1.22287 0.97343 0.96332 0.86711 1.22109 0.94057 0.98105 1.01879 1.18639 0.95917 0.91600 0.90870 1.21245 1.14562 1.11520 1.07557 0.92634 1.24946 0.97275 0.95174 0.96504 1.69838 1.41180 1.25640 1.16474 0.86570 0.82547 0.80422 0.78685 1.19828 1.21058 1.21037 1.22007 0.95771 0.98227 1.00105 1.21694 0.97803 0.80201 1.01361 0.92860 0.92720 0.92265 0.92126 0.91419 0.90542 0.88630 0.89524 0.94149 0.93893 0.91832 0.91188 0.94020 0.87699 0.95451 0.93026 0.92924 0.92127 0.90472 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.27 16 2 C -0.12 -1.34 5.83 -26.73 -0.16 -1.49 16 3 C -0.12 -1.66 4.47 -26.73 -0.12 -1.78 16 4 C 0.08 1.14 1.67 -27.88 -0.05 1.09 16 5 H 0.08 1.03 6.98 -51.93 -0.36 0.67 16 6 O -0.36 -5.38 9.44 -55.03 -0.52 -5.90 16 7 C 0.03 0.35 10.81 101.05 1.09 1.45 16 8 C 0.49 8.81 7.02 -10.99 -0.08 8.73 16 9 O -0.55 -11.59 15.95 -14.24 -0.23 -11.82 16 10 N -0.60 -10.71 2.97 -172.50 -0.51 -11.23 16 11 C 0.10 1.63 5.50 -3.49 -0.02 1.62 16 12 C -0.12 -2.59 4.98 -26.39 -0.13 -2.72 16 13 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 14 C -0.51 -13.33 8.56 -34.44 -0.29 -13.62 16 15 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 17 N -0.89 -23.87 11.30 55.43 0.63 -23.24 16 18 Si 0.89 20.52 29.54 -169.99 -5.02 15.49 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.12 -2.49 5.30 -26.61 -0.14 -2.64 16 23 C 0.11 2.05 6.42 -3.70 -0.02 2.03 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.76 7.83 -51.93 -0.41 0.36 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.10 1.38 5.13 -51.93 -0.27 1.12 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.02 4.55 -51.93 -0.24 0.78 16 36 H 0.04 0.89 7.55 -51.93 -0.39 0.49 16 37 H 0.10 2.46 6.03 -51.93 -0.31 2.15 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.44 7.03 -51.93 -0.37 1.07 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 335.28 15.07 5.05 5.05 Total: -1.00 -29.27 335.28 -7.81 -37.08 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.38 Total: 0.70 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 0.17 Total: -6.14 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.11 Total: -34.47 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.75 Total: -17.72 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.27 -7.81 -37.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567014596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.966 kcal (2) G-P(sol) polarization free energy of solvation -29.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds