Wall clock time and date at job start Mon Mar 30 2020 01:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47452 * 2 1 4 4 C 1.52998 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47199 * 54.85092 * 4 3 2 6 6 O 1.42901 * 109.46866 * 294.85033 * 4 3 2 7 7 C 1.42903 * 113.99739 * 150.00154 * 6 4 3 8 8 C 1.50706 * 109.46830 * 174.85316 * 4 3 2 9 9 O 1.21280 * 119.99796 * 112.43912 * 8 4 3 10 10 N 1.34768 * 119.99793 * 292.42894 * 8 4 3 11 11 C 1.46926 * 120.63546 * 355.43417 * 10 8 4 12 12 C 1.53617 * 108.54636 * 126.36539 * 11 10 8 13 13 C 1.53036 * 109.24224 * 54.85680 * 12 11 10 14 14 C 1.50708 * 109.45038 * 178.49682 * 13 12 11 15 15 H 1.08005 * 119.99640 * 120.06129 * 14 13 12 16 16 C 1.37872 * 119.99967 * 300.05904 * 14 13 12 17 17 N 1.31514 * 119.99959 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99985 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47168 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46958 * 120.00386 * 18 16 14 21 21 H 1.48495 * 109.47195 * 240.00505 * 18 16 14 22 22 C 1.53043 * 109.54016 * 298.51153 * 13 12 11 23 23 C 1.46932 * 120.62638 * 175.71116 * 10 8 4 24 24 H 1.08990 * 109.47592 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47017 * 300.00538 * 1 2 3 26 26 H 1.09005 * 109.46750 * 59.99562 * 1 2 3 27 27 H 1.09000 * 109.46503 * 239.99952 * 2 1 3 28 28 H 1.08995 * 109.46804 * 120.00344 * 2 1 3 29 29 H 1.09002 * 109.46754 * 59.99921 * 3 2 1 30 30 H 1.09007 * 109.46938 * 300.00480 * 3 2 1 31 31 H 1.09000 * 109.46832 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.47171 * 300.00065 * 7 6 4 33 33 H 1.08996 * 109.46841 * 59.99852 * 7 6 4 34 34 H 1.09005 * 109.58210 * 246.20401 * 11 10 8 35 35 H 1.09002 * 109.58496 * 6.62204 * 11 10 8 36 36 H 1.08996 * 109.63478 * 294.86714 * 12 11 10 37 37 H 1.08997 * 109.43230 * 174.72177 * 12 11 10 38 38 H 1.09003 * 109.46414 * 58.53197 * 13 12 11 39 39 H 0.96997 * 120.00009 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.49860 * 301.41463 * 22 13 12 41 41 H 1.08994 * 109.52544 * 181.33233 * 22 13 12 42 42 H 1.08992 * 109.58764 * 353.37358 * 23 10 8 43 43 H 1.09002 * 109.58852 * 113.66202 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8509 -0.8412 6 8 4.0468 0.8760 1.2216 7 6 5.3064 0.2117 1.1020 8 6 4.0724 2.8575 -0.1281 9 8 4.6529 3.3808 0.7993 10 7 3.8766 3.5415 -1.2727 11 6 3.2649 2.8899 -2.4390 12 6 2.0663 3.7342 -2.8975 13 6 2.5288 5.1707 -3.1514 14 6 1.3641 5.9946 -3.6370 15 1 1.0430 6.8594 -3.0754 16 6 0.7084 5.6442 -4.7981 17 7 1.0992 4.5908 -5.4817 18 14 -0.7357 6.6650 -5.3997 19 1 -0.9742 7.7883 -4.4581 20 1 -0.4315 7.2063 -6.7486 21 1 -1.9492 5.8121 -5.4707 22 6 3.0714 5.7709 -1.8523 23 6 4.2765 4.9513 -1.3801 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.5985 -0.1908 2.0719 32 1 5.2210 -0.6022 0.3820 33 1 6.0602 0.9211 0.7606 34 1 3.9963 2.8209 -3.2443 35 1 2.9262 1.8911 -2.1636 36 1 1.2985 3.7306 -2.1239 37 1 1.6585 3.3154 -3.8175 38 1 3.3141 5.1712 -3.9074 39 1 0.6377 4.3441 -6.2984 40 1 2.2942 5.7481 -1.0885 41 1 3.3789 6.8017 -2.0278 42 1 4.6053 5.3130 -0.4059 43 1 5.0902 5.0466 -2.0990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567014596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:20 Heat of formation + Delta-G solvation = -116.795330 kcal Electronic energy + Delta-G solvation = -22086.204265 eV Core-core repulsion = 18937.124481 eV Total energy + Delta-G solvation = -3149.079784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52324 -39.09177 -38.02803 -35.88302 -35.19437 -33.17341 -31.86700 -30.62906 -28.10066 -27.28360 -25.82259 -24.35046 -23.75535 -22.10674 -21.57641 -19.86473 -18.78815 -18.19927 -17.75230 -16.88788 -16.57481 -16.40316 -15.81122 -15.54998 -15.43370 -14.90507 -14.64795 -14.53889 -14.23642 -14.15392 -13.93547 -13.36236 -13.20334 -13.07636 -12.86959 -12.80167 -12.44006 -12.34189 -12.16801 -12.05638 -11.94960 -11.89879 -11.53003 -11.47875 -11.43927 -11.01377 -10.84203 -10.41143 -10.20346 -9.57983 -8.06985 -6.19497 1.40921 1.44955 1.49689 1.54329 1.96792 2.45288 2.77607 3.19999 3.40371 3.80810 3.85492 4.09542 4.20215 4.21035 4.29247 4.36180 4.46976 4.47876 4.52808 4.55618 4.66605 4.69274 4.72868 4.81947 4.84469 4.91719 4.98453 5.05180 5.18350 5.22621 5.28657 5.34609 5.42966 5.50335 5.52372 5.66314 5.99702 6.02963 6.15083 6.40344 6.47040 6.89394 7.11869 7.48294 8.96642 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.005487 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.411647 B = 5101.593205 C = 5967.807987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.118 4.118 4 C 0.083 3.917 5 H 0.110 0.890 6 O -0.376 6.376 7 C 0.023 3.977 8 C 0.484 3.516 9 O -0.581 6.581 10 N -0.599 5.599 11 C 0.106 3.894 12 C -0.113 4.113 13 C 0.045 3.955 14 C -0.534 4.534 15 H 0.045 0.955 16 C 0.022 3.978 17 N -0.910 5.910 18 Si 0.945 3.055 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.279 1.279 22 C -0.113 4.113 23 C 0.116 3.884 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.033 0.967 37 H 0.083 0.917 38 H 0.004 0.996 39 H 0.262 0.738 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 -11.609 7.117 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.155 4.155 4 C 0.022 3.978 5 H 0.127 0.873 6 O -0.294 6.294 7 C -0.072 4.072 8 C 0.272 3.728 9 O -0.461 6.461 10 N -0.333 5.333 11 C -0.015 4.015 12 C -0.151 4.151 13 C 0.027 3.973 14 C -0.572 4.572 15 H 0.063 0.937 16 C -0.177 4.177 17 N -0.549 5.549 18 Si 0.772 3.228 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.205 1.205 22 C -0.151 4.151 23 C -0.007 4.007 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.023 0.977 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.706 -11.428 7.621 14.227 hybrid contribution -0.562 1.043 -0.756 1.405 sum 3.144 -10.385 6.865 12.840 Atomic orbital electron populations 1.21773 0.95247 1.02379 1.01671 1.21429 0.96263 0.94080 1.03132 1.21840 0.90137 1.00224 1.03348 1.22136 0.96669 0.89420 0.89581 0.87257 1.87950 1.37788 1.72529 1.31124 1.23036 0.84150 0.95795 1.04262 1.21990 0.78955 0.90303 0.81522 1.90618 1.44102 1.71463 1.39957 1.48340 1.59901 1.12002 1.13012 1.22197 0.95802 0.96875 0.86663 1.21860 0.95376 0.97285 1.00610 1.18616 0.94438 0.92933 0.91357 1.21545 1.15768 1.11816 1.08035 0.93678 1.25562 0.99355 0.96145 0.96678 1.69933 1.41952 1.26399 1.16647 0.85701 0.79985 0.79082 0.78030 1.19915 1.20759 1.20498 1.21852 0.96189 0.98687 0.98372 1.21587 0.97091 0.80575 1.01424 0.91182 0.93156 0.93071 0.90484 0.91057 0.92206 0.89557 0.87840 0.91387 0.95245 0.91155 0.88000 0.94849 0.89896 0.97738 0.92877 0.94030 0.91890 0.90659 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.91 71.98 0.71 -2.26 16 2 C -0.11 -2.23 5.83 30.59 0.18 -2.05 16 3 C -0.12 -3.03 4.47 30.59 0.14 -2.89 16 4 C 0.08 2.26 1.67 29.85 0.05 2.31 16 5 H 0.11 2.36 6.98 -2.39 -0.02 2.34 16 6 O -0.38 -10.53 9.44 -130.05 -1.23 -11.76 16 7 C 0.02 0.49 10.81 113.37 1.23 1.71 16 8 C 0.48 16.92 7.02 87.66 0.62 17.54 16 9 O -0.58 -24.47 15.95 15.90 0.25 -24.21 16 10 N -0.60 -20.84 2.97 -818.05 -2.43 -23.27 16 11 C 0.11 3.49 5.50 86.51 0.48 3.97 16 12 C -0.11 -4.73 4.98 30.81 0.15 -4.58 16 13 C 0.05 2.12 2.06 -11.51 -0.02 2.09 16 14 C -0.53 -28.24 8.56 25.60 0.22 -28.02 16 15 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 16 C 0.02 1.14 5.30 84.65 0.45 1.59 16 17 N -0.91 -48.76 11.30 21.45 0.24 -48.52 16 18 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 22 C -0.11 -4.62 5.30 30.67 0.16 -4.45 16 23 C 0.12 4.22 6.42 86.36 0.55 4.77 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.40 7.83 -2.39 -0.02 1.38 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 2.37 5.13 -2.38 -0.01 2.36 16 31 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 33 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.10 2.70 4.55 -2.39 -0.01 2.69 16 36 H 0.03 1.42 7.55 -2.39 -0.02 1.40 16 37 H 0.08 3.90 6.03 -2.39 -0.01 3.88 16 38 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 40 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.07 2.79 7.03 -2.39 -0.02 2.78 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -62.74 335.28 4.75 -57.99 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.97 Total: 15.93 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 4.91 Total: -10.28 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -2.18 Total: -71.78 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.97 Total: -35.97 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -62.74 4.75 -57.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567014596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.801 kcal (2) G-P(sol) polarization free energy of solvation -62.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds