Wall clock time and date at job start Mon Mar 30 2020 01:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47318 * 2 1 4 4 C 1.53004 * 109.47190 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46781 * 304.99713 * 4 3 2 6 6 O 1.42894 * 109.47426 * 64.99650 * 4 3 2 7 7 C 1.53002 * 109.47001 * 185.00129 * 4 3 2 8 8 C 1.50699 * 109.47118 * 174.99543 * 7 4 3 9 9 O 1.21281 * 120.00127 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99892 * 179.97438 * 8 7 4 11 11 C 1.46919 * 120.63255 * 0.02562 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 15 15 H 1.08994 * 109.50232 * 301.42239 * 14 13 12 16 16 C 1.50707 * 109.50154 * 181.32368 * 14 13 12 17 17 H 1.07992 * 119.99905 * 240.16604 * 16 14 13 18 18 C 1.37877 * 119.99375 * 60.16045 * 16 14 13 19 19 N 1.31506 * 120.00613 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99411 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47438 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47059 * 120.00385 * 20 18 16 23 23 H 1.48499 * 109.46892 * 240.00011 * 20 18 16 24 24 C 1.46933 * 120.62741 * 180.02562 * 10 8 7 25 25 H 1.09004 * 109.47174 * 300.00077 * 1 2 3 26 26 H 1.09000 * 109.47420 * 59.99537 * 1 2 3 27 27 H 1.09002 * 109.47268 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47174 * 239.99923 * 2 1 3 29 29 H 1.09000 * 109.47420 * 120.00463 * 2 1 3 30 30 H 1.09003 * 109.47245 * 60.00372 * 3 2 1 31 31 H 1.08994 * 109.47105 * 299.99864 * 3 2 1 32 32 H 0.96702 * 113.99382 * 60.00737 * 6 4 3 33 33 H 1.09004 * 109.47080 * 54.99934 * 7 4 3 34 34 H 1.08995 * 109.47084 * 295.00132 * 7 4 3 35 35 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 36 36 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 37 37 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 38 38 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 39 39 H 1.08999 * 109.41979 * 178.67448 * 13 12 11 40 40 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 41 41 H 0.97000 * 120.00565 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.58580 * 353.38021 * 24 10 8 43 43 H 1.09006 * 109.57831 * 113.65514 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9336 0.8529 0.8410 6 8 4.0459 0.8732 -1.2219 7 6 4.0801 2.8794 0.1251 8 6 5.5820 2.8704 0.2481 9 8 6.1851 1.8183 0.2359 10 7 6.2551 4.0316 0.3707 11 6 5.5385 5.3141 0.3865 12 6 5.9481 6.0957 1.6388 13 6 7.4757 6.2253 1.6737 14 6 8.1078 4.8333 1.7415 15 1 7.7478 4.3130 2.6290 16 6 9.6077 4.9645 1.8084 17 1 10.2230 4.5260 1.0369 18 6 10.1940 5.6445 2.8547 19 7 9.4447 6.1782 3.7945 20 14 12.0531 5.8078 2.9373 21 1 12.6625 5.1240 1.7686 22 1 12.4250 7.2454 2.9197 23 1 12.5496 5.1835 4.1898 24 6 7.7194 4.0389 0.4910 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.7603 1.3478 -2.0145 33 1 3.6458 3.3429 1.0110 34 1 3.7913 3.4462 -0.7600 35 1 5.7970 5.8882 -0.5033 36 1 4.4640 5.1322 0.4045 37 1 5.4960 7.0872 1.6130 38 1 5.6082 5.5634 2.5272 39 1 7.7706 6.8012 2.5509 40 1 7.8168 6.7355 0.7729 41 1 9.8573 6.6563 4.5308 42 1 8.0838 3.0156 0.5803 43 1 8.1561 4.5065 -0.3916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597909083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:19 Heat of formation + Delta-G solvation = -116.706960 kcal Electronic energy + Delta-G solvation = -21287.665221 eV Core-core repulsion = 18138.589270 eV Total energy + Delta-G solvation = -3149.075952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.77928 -37.88515 -36.48175 -34.21842 -33.50587 -31.56950 -31.12392 -30.02976 -27.45488 -25.07412 -24.42691 -22.35899 -21.65930 -21.31175 -19.78548 -18.23664 -16.86228 -16.45794 -16.19848 -16.08603 -15.12598 -14.81758 -14.58051 -14.04899 -14.01085 -13.57261 -13.48193 -13.15751 -12.82731 -12.59184 -12.31677 -12.05232 -11.99920 -11.87324 -11.58508 -11.39563 -11.00485 -10.89529 -10.83439 -10.75233 -10.70072 -10.32085 -9.98698 -9.90235 -9.79015 -9.45171 -9.18359 -8.80933 -8.39046 -7.85419 -6.02320 -4.09160 3.13199 3.28703 3.36871 3.41143 3.54975 4.35655 4.42967 4.56410 4.71839 4.84095 4.98249 5.09243 5.18695 5.27064 5.34237 5.34399 5.44859 5.55849 5.60298 5.63117 5.69870 5.77758 5.86449 5.90672 6.11680 6.15134 6.18551 6.32870 6.41103 6.48143 6.67403 6.81654 7.00168 7.17153 7.33598 7.69177 7.72362 7.92296 8.05685 8.07820 8.38039 8.73793 8.95094 9.55832 11.03307 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036941 B = 0.003701 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.790547 B = 7564.245237 C = 7859.599598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.151 4.151 4 C 0.123 3.877 5 H 0.104 0.896 6 O -0.544 6.544 7 C -0.174 4.174 8 C 0.507 3.493 9 O -0.536 6.536 10 N -0.607 5.607 11 C 0.110 3.890 12 C -0.136 4.136 13 C -0.112 4.112 14 C 0.040 3.960 15 H 0.029 0.971 16 C -0.513 4.513 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.118 3.882 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.364 0.636 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.035 0.965 41 H 0.260 0.740 42 H 0.078 0.922 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.979 -3.448 -7.512 18.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.189 4.189 4 C 0.063 3.937 5 H 0.122 0.878 6 O -0.348 6.348 7 C -0.215 4.215 8 C 0.295 3.705 9 O -0.413 6.413 10 N -0.340 5.340 11 C -0.013 4.013 12 C -0.174 4.174 13 C -0.150 4.150 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.551 4.551 17 H 0.076 0.924 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.003 4.003 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.210 0.790 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.352 -4.339 -6.942 18.287 hybrid contribution 0.644 0.901 -0.139 1.116 sum -15.709 -3.438 -7.082 17.571 Atomic orbital electron populations 1.21789 0.96121 1.01502 1.01565 1.21454 0.95252 0.96422 1.02808 1.22361 0.96085 0.97833 1.02654 1.21700 0.91238 0.91966 0.88777 0.87816 1.86733 1.76956 1.56194 1.14875 1.22491 0.94646 0.99986 1.04341 1.20348 0.89347 0.83762 0.77092 1.90703 1.69957 1.30497 1.50169 1.48322 1.08871 1.05408 1.71418 1.21705 0.95368 0.84991 0.99256 1.22061 1.00480 0.98373 0.96469 1.21679 0.89810 1.01054 1.02460 1.18961 0.95433 0.91629 0.91894 0.95320 1.21128 0.91071 1.34426 1.08512 0.92422 1.24940 0.98102 0.95390 0.95435 1.69878 1.34671 1.36364 1.11932 0.86523 0.85693 0.77680 0.78048 1.19710 1.21050 1.21023 1.21952 0.76287 1.02113 0.99965 0.92880 0.92941 0.92849 0.91292 0.91935 0.91023 0.91713 0.79024 0.88419 0.89184 0.92115 0.91340 0.92497 0.92428 0.88689 0.94613 0.93048 0.90378 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.15 0.37 -0.75 16 2 C -0.12 -1.07 5.83 -26.74 -0.16 -1.23 16 3 C -0.15 -1.31 4.89 -26.73 -0.13 -1.44 16 4 C 0.12 1.46 2.51 -26.73 -0.07 1.40 16 5 H 0.10 1.48 7.96 -51.93 -0.41 1.06 16 6 O -0.54 -7.23 12.11 -49.66 -0.60 -7.83 16 7 C -0.17 -2.11 3.73 -27.88 -0.10 -2.21 16 8 C 0.51 9.10 7.58 -10.99 -0.08 9.02 16 9 O -0.54 -11.87 14.83 -8.87 -0.13 -12.00 16 10 N -0.61 -11.22 2.97 -172.79 -0.51 -11.74 16 11 C 0.11 1.66 6.33 -3.71 -0.02 1.64 16 12 C -0.14 -2.37 6.11 -26.45 -0.16 -2.53 16 13 C -0.11 -2.50 4.97 -26.53 -0.13 -2.64 16 14 C 0.04 0.99 2.25 -91.67 -0.21 0.78 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.51 -14.01 8.56 -34.44 -0.29 -14.30 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 20 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 C 0.12 2.60 5.65 -3.73 -0.02 2.58 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.66 7.82 -51.93 -0.41 0.25 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.36 3.34 9.05 45.56 0.41 3.75 16 33 H 0.10 1.04 7.69 -51.93 -0.40 0.64 16 34 H 0.09 0.87 7.94 -51.93 -0.41 0.46 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.08 1.87 7.00 -51.93 -0.36 1.51 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -31.75 338.93 -8.46 -40.21 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.82 Total: 2.51 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -1.11 Total: -8.06 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.11 Total: -36.15 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.73 Total: -19.83 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.75 -8.46 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.498 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds