Wall clock time and date at job start Mon Mar 30 2020 01:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47318 * 2 1 4 4 C 1.53004 * 109.47190 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46781 * 304.99713 * 4 3 2 6 6 O 1.42894 * 109.47426 * 64.99650 * 4 3 2 7 7 C 1.53002 * 109.47001 * 185.00129 * 4 3 2 8 8 C 1.50699 * 109.47118 * 174.99543 * 7 4 3 9 9 O 1.21281 * 120.00127 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99892 * 179.97438 * 8 7 4 11 11 C 1.46919 * 120.63255 * 0.02562 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 15 15 H 1.08994 * 109.50232 * 301.42239 * 14 13 12 16 16 C 1.50707 * 109.50154 * 181.32368 * 14 13 12 17 17 H 1.07992 * 119.99905 * 240.16604 * 16 14 13 18 18 C 1.37877 * 119.99375 * 60.16045 * 16 14 13 19 19 N 1.31506 * 120.00613 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99411 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47438 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47059 * 120.00385 * 20 18 16 23 23 H 1.48499 * 109.46892 * 240.00011 * 20 18 16 24 24 C 1.46933 * 120.62741 * 180.02562 * 10 8 7 25 25 H 1.09004 * 109.47174 * 300.00077 * 1 2 3 26 26 H 1.09000 * 109.47420 * 59.99537 * 1 2 3 27 27 H 1.09002 * 109.47268 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47174 * 239.99923 * 2 1 3 29 29 H 1.09000 * 109.47420 * 120.00463 * 2 1 3 30 30 H 1.09003 * 109.47245 * 60.00372 * 3 2 1 31 31 H 1.08994 * 109.47105 * 299.99864 * 3 2 1 32 32 H 0.96702 * 113.99382 * 60.00737 * 6 4 3 33 33 H 1.09004 * 109.47080 * 54.99934 * 7 4 3 34 34 H 1.08995 * 109.47084 * 295.00132 * 7 4 3 35 35 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 36 36 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 37 37 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 38 38 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 39 39 H 1.08999 * 109.41979 * 178.67448 * 13 12 11 40 40 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 41 41 H 0.97000 * 120.00565 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.58580 * 353.38021 * 24 10 8 43 43 H 1.09006 * 109.57831 * 113.65514 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9336 0.8529 0.8410 6 8 4.0459 0.8732 -1.2219 7 6 4.0801 2.8794 0.1251 8 6 5.5820 2.8704 0.2481 9 8 6.1851 1.8183 0.2359 10 7 6.2551 4.0316 0.3707 11 6 5.5385 5.3141 0.3865 12 6 5.9481 6.0957 1.6388 13 6 7.4757 6.2253 1.6737 14 6 8.1078 4.8333 1.7415 15 1 7.7478 4.3130 2.6290 16 6 9.6077 4.9645 1.8084 17 1 10.2230 4.5260 1.0369 18 6 10.1940 5.6445 2.8547 19 7 9.4447 6.1782 3.7945 20 14 12.0531 5.8078 2.9373 21 1 12.6625 5.1240 1.7686 22 1 12.4250 7.2454 2.9197 23 1 12.5496 5.1835 4.1898 24 6 7.7194 4.0389 0.4910 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.7603 1.3478 -2.0145 33 1 3.6458 3.3429 1.0110 34 1 3.7913 3.4462 -0.7600 35 1 5.7970 5.8882 -0.5033 36 1 4.4640 5.1322 0.4045 37 1 5.4960 7.0872 1.6130 38 1 5.6082 5.5634 2.5272 39 1 7.7706 6.8012 2.5509 40 1 7.8168 6.7355 0.7729 41 1 9.8573 6.6563 4.5308 42 1 8.0838 3.0156 0.5803 43 1 8.1561 4.5065 -0.3916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597909083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:19 Heat of formation + Delta-G solvation = -137.620668 kcal Electronic energy + Delta-G solvation = -21288.572108 eV Core-core repulsion = 18138.589270 eV Total energy + Delta-G solvation = -3149.982838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.16492 -39.02207 -37.94666 -35.37354 -34.95846 -33.16404 -32.45353 -31.53787 -28.39938 -26.95017 -25.87207 -23.51066 -23.12353 -22.06124 -21.38926 -19.71723 -18.54514 -17.84751 -17.43400 -17.20277 -16.65242 -16.18131 -16.01512 -15.17090 -15.06933 -15.02530 -14.74432 -14.51421 -14.25612 -13.96256 -13.78795 -13.58005 -12.92401 -12.87702 -12.72471 -12.64516 -12.56843 -12.50262 -12.13605 -11.94556 -11.85731 -11.64415 -11.54763 -11.47607 -11.25538 -10.91378 -10.79449 -10.55903 -10.43010 -9.44036 -8.12623 -6.27806 1.37925 1.40204 1.51680 1.76536 2.16722 2.42727 3.13653 3.46608 3.69143 3.74571 4.08039 4.12676 4.21883 4.27128 4.32926 4.35795 4.44367 4.55445 4.61896 4.68382 4.71408 4.77980 4.83684 4.88638 4.97878 4.98811 5.06354 5.12182 5.14951 5.29649 5.31146 5.43780 5.49189 5.51883 5.59291 5.60523 5.92464 6.13298 6.33782 6.64564 6.82069 6.99958 7.33900 7.40451 8.91170 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036941 B = 0.003701 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.790547 B = 7564.245237 C = 7859.599598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.139 4.139 4 C 0.123 3.877 5 H 0.068 0.932 6 O -0.571 6.571 7 C -0.161 4.161 8 C 0.498 3.502 9 O -0.590 6.590 10 N -0.612 5.612 11 C 0.110 3.890 12 C -0.129 4.129 13 C -0.106 4.106 14 C 0.042 3.958 15 H -0.016 1.016 16 C -0.539 4.539 17 H 0.050 0.950 18 C 0.017 3.983 19 N -0.913 5.913 20 Si 0.955 3.045 21 H -0.270 1.270 22 H -0.274 1.274 23 H -0.282 1.282 24 C 0.131 3.869 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.382 0.618 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.262 0.738 42 H 0.046 0.954 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.362 -1.973 -8.780 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.176 4.176 4 C 0.063 3.937 5 H 0.086 0.914 6 O -0.378 6.378 7 C -0.200 4.200 8 C 0.288 3.712 9 O -0.470 6.470 10 N -0.344 5.344 11 C -0.012 4.012 12 C -0.167 4.167 13 C -0.145 4.145 14 C 0.023 3.977 15 H 0.003 0.997 16 C -0.577 4.577 17 H 0.068 0.932 18 C -0.182 4.182 19 N -0.552 5.552 20 Si 0.781 3.219 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.208 1.208 24 C 0.008 3.992 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.230 0.770 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.098 0.902 36 H 0.137 0.863 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.771 -2.837 -8.223 20.689 hybrid contribution 1.417 0.397 0.273 1.496 sum -17.354 -2.440 -7.950 19.244 Atomic orbital electron populations 1.21754 0.94641 1.01863 1.02325 1.21457 0.96500 0.96658 1.01612 1.22255 0.93042 0.97842 1.04473 1.21652 0.93423 0.91207 0.87377 0.91387 1.86695 1.77724 1.57269 1.16092 1.22542 0.89353 1.00883 1.07271 1.21495 0.91847 0.82523 0.75376 1.90681 1.71610 1.32407 1.52309 1.48426 1.07297 1.07385 1.71340 1.21983 0.97730 0.82968 0.98470 1.21977 0.96464 1.00727 0.97495 1.21476 0.93723 0.98452 1.00813 1.18855 0.94412 0.93208 0.91261 0.99742 1.21481 0.92779 1.34725 1.08759 0.93215 1.25689 1.02446 0.95030 0.95080 1.70007 1.36300 1.36620 1.12252 0.85551 0.80459 0.78015 0.77907 1.19449 1.19952 1.20828 1.21462 0.79514 0.99591 0.98672 0.92288 0.91919 0.92824 0.92431 0.93388 0.89610 0.89263 0.77002 0.85853 0.85141 0.90218 0.86314 0.89050 0.93679 0.92055 0.94498 0.92896 0.93567 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.10 16 2 C -0.12 -2.00 5.83 30.59 0.18 -1.83 16 3 C -0.14 -1.94 4.89 30.59 0.15 -1.79 16 4 C 0.12 2.72 2.51 30.60 0.08 2.80 16 5 H 0.07 1.97 7.96 -2.39 -0.02 1.96 16 6 O -0.57 -14.58 12.11 -135.19 -1.64 -16.22 16 7 C -0.16 -3.32 3.73 29.85 0.11 -3.21 16 8 C 0.50 17.38 7.58 87.66 0.66 18.04 16 9 O -0.59 -26.91 14.83 10.76 0.16 -26.75 16 10 N -0.61 -21.94 2.97 -818.97 -2.44 -24.38 16 11 C 0.11 2.90 6.33 86.36 0.55 3.44 16 12 C -0.13 -4.20 6.11 30.78 0.19 -4.01 16 13 C -0.11 -4.79 4.97 30.72 0.15 -4.63 16 14 C 0.04 2.15 2.25 -11.47 -0.03 2.13 16 15 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 16 C -0.54 -30.56 8.56 25.60 0.22 -30.34 16 17 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 18 C 0.02 0.93 5.30 84.66 0.45 1.38 16 19 N -0.91 -52.71 11.32 21.45 0.24 -52.46 16 20 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 24 C 0.13 5.93 5.65 86.35 0.49 6.41 16 25 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 1.05 7.82 -2.38 -0.02 1.03 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.38 6.13 9.05 -74.06 -0.67 5.46 16 33 H 0.12 1.99 7.69 -2.38 -0.02 1.98 16 34 H 0.13 1.72 7.94 -2.39 -0.02 1.70 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.12 2.01 5.93 -2.39 -0.01 1.99 16 37 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 3.18 6.05 -2.39 -0.01 3.16 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.59 16 41 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.05 2.35 7.00 -2.39 -0.02 2.33 16 43 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 Total: -1.00 -74.67 338.93 2.57 -72.10 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.30 Total: 14.11 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 3.91 Total: -12.70 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -2.19 Total: -76.84 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -1.48 Total: -42.97 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -74.67 2.57 -72.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.525 kcal (2) G-P(sol) polarization free energy of solvation -74.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds