Wall clock time and date at job start Mon Mar 30 2020 01:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53006 * 109.47230 * 2 1 4 4 C 1.53002 * 109.47005 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47316 * 304.99898 * 4 3 2 6 6 O 1.42898 * 109.47104 * 65.00139 * 4 3 2 7 7 C 1.52998 * 109.46590 * 185.00247 * 4 3 2 8 8 C 1.50707 * 109.46816 * 175.00140 * 7 4 3 9 9 O 1.21287 * 120.00032 * 6.39015 * 8 7 4 10 10 N 1.34780 * 119.99681 * 186.39777 * 8 7 4 11 11 C 1.37091 * 120.00363 * 3.58334 * 10 8 7 12 12 H 1.08003 * 120.00299 * 127.08484 * 11 10 8 13 13 C 1.38955 * 119.99860 * 307.08431 * 11 10 8 14 14 N 1.31410 * 120.00048 * 335.34118 * 13 11 10 15 15 Si 1.86804 * 119.99830 * 155.34005 * 13 11 10 16 16 H 1.48499 * 109.46993 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46816 * 119.99820 * 15 13 11 18 18 H 1.48496 * 109.47358 * 240.00189 * 15 13 11 19 19 C 1.46505 * 119.99561 * 183.58852 * 10 8 7 20 20 C 1.54965 * 110.92196 * 126.53618 * 19 10 8 21 21 C 1.54265 * 104.15678 * 156.29487 * 20 19 10 22 22 C 1.53875 * 106.64070 * 336.44399 * 21 20 19 23 23 C 1.54259 * 106.60116 * 359.97438 * 22 21 20 24 24 H 1.09004 * 109.47653 * 59.99514 * 1 2 3 25 25 H 1.09004 * 109.47583 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47375 * 299.99515 * 1 2 3 27 27 H 1.09007 * 109.46971 * 240.00596 * 2 1 3 28 28 H 1.08996 * 109.47497 * 120.00831 * 2 1 3 29 29 H 1.09001 * 109.46545 * 59.99977 * 3 2 1 30 30 H 1.08998 * 109.46899 * 300.00440 * 3 2 1 31 31 H 0.96705 * 114.00118 * 60.00116 * 6 4 3 32 32 H 1.09002 * 109.47402 * 55.00441 * 7 4 3 33 33 H 1.08997 * 109.47189 * 294.99804 * 7 4 3 34 34 H 0.96998 * 119.99308 * 175.12083 * 14 13 11 35 35 H 1.08996 * 110.67243 * 3.22806 * 19 10 8 36 36 H 1.08997 * 110.47501 * 37.64198 * 20 19 10 37 37 H 1.08995 * 110.52856 * 274.97559 * 20 19 10 38 38 H 1.09003 * 110.03490 * 217.13681 * 21 20 19 39 39 H 1.08994 * 110.03475 * 95.75321 * 21 20 19 40 40 H 1.09007 * 110.03246 * 119.26585 * 22 21 20 41 41 H 1.09002 * 110.03393 * 240.64364 * 22 21 20 42 42 H 1.08997 * 110.49174 * 142.28452 * 23 22 21 43 43 H 1.09003 * 110.49151 * 264.79937 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8409 6 8 4.0458 0.8733 -1.2220 7 6 4.0799 2.8795 0.1251 8 6 5.5820 2.8705 0.2480 9 8 6.1947 1.8316 0.1202 10 7 6.2443 4.0169 0.5001 11 6 5.5478 5.1775 0.7176 12 1 5.7387 5.7639 1.6042 13 6 4.5960 5.5994 -0.2028 14 7 4.6776 5.2132 -1.4562 15 14 3.2005 6.7154 0.3418 16 1 3.3339 7.0027 1.7927 17 1 3.2571 7.9874 -0.4224 18 1 1.9011 6.0429 0.0884 19 6 7.7088 4.0227 0.5415 20 6 8.2850 5.1017 -0.4099 21 6 9.6820 5.4076 0.1685 22 6 9.6389 5.0147 1.6556 23 6 8.2167 4.4841 1.9302 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6765 1.9564 -0.8899 31 1 3.7601 1.3479 -2.0147 32 1 3.6457 3.3429 1.0110 33 1 3.7912 3.4463 -0.7600 34 1 3.9757 5.4489 -2.0829 35 1 8.1047 3.0381 0.2929 36 1 7.6616 5.9957 -0.3947 37 1 8.3691 4.7114 -1.4241 38 1 9.9027 6.4704 0.0693 39 1 10.4383 4.8195 -0.3512 40 1 10.3738 4.2353 1.8574 41 1 9.8394 5.8867 2.2781 42 1 8.2504 3.6430 2.6227 43 1 7.5831 5.2778 2.3261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611007441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:25 Heat of formation + Delta-G solvation = -114.163627 kcal Electronic energy + Delta-G solvation = -22069.959514 eV Core-core repulsion = 18920.993850 eV Total energy + Delta-G solvation = -3148.965665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.99029 -37.46031 -36.17958 -34.15298 -33.69888 -31.50753 -30.24021 -27.94049 -27.44541 -26.16207 -24.71458 -22.02028 -20.76573 -19.68948 -19.53565 -19.34795 -16.56930 -15.83196 -15.69828 -15.40306 -15.02974 -14.71681 -14.30602 -14.14663 -13.43961 -13.29223 -13.09389 -12.92884 -12.56006 -12.30591 -11.76934 -11.70691 -11.52409 -11.30259 -11.21883 -11.12321 -10.85486 -10.64632 -10.62383 -10.45938 -10.41294 -10.37169 -10.25312 -10.06775 -9.80476 -9.61457 -9.25248 -8.64121 -8.17897 -7.24822 -6.40667 -4.21192 3.06543 3.19110 3.22189 4.05828 4.22151 4.70823 4.81856 5.10569 5.16315 5.30461 5.31757 5.36050 5.42133 5.56225 5.69136 5.82884 5.90629 6.02544 6.13110 6.16521 6.19393 6.21333 6.23174 6.25100 6.32183 6.42185 6.48076 6.53630 6.55069 6.56391 6.70634 6.71464 6.82138 7.00815 7.09101 7.16621 7.33097 7.43771 8.02802 8.41100 8.67336 8.93413 9.67690 10.11476 10.59853 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018181 B = 0.006509 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.724021 B = 4300.775810 C = 5311.422341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.152 4.152 4 C 0.122 3.878 5 H 0.090 0.910 6 O -0.547 6.547 7 C -0.163 4.163 8 C 0.515 3.485 9 O -0.597 6.597 10 N -0.452 5.452 11 C -0.331 4.331 12 H 0.080 0.920 13 C 0.053 3.947 14 N -0.847 5.847 15 Si 0.892 3.108 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.277 1.277 19 C 0.134 3.866 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.129 4.129 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.363 0.637 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.267 0.733 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.728 -1.348 2.620 4.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.190 4.190 4 C 0.063 3.937 5 H 0.108 0.892 6 O -0.351 6.351 7 C -0.202 4.202 8 C 0.305 3.695 9 O -0.481 6.481 10 N -0.172 5.172 11 C -0.459 4.459 12 H 0.098 0.902 13 C -0.154 4.154 14 N -0.483 5.483 15 Si 0.718 3.282 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.202 1.202 19 C 0.030 3.970 20 C -0.155 4.155 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.168 4.168 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.208 0.792 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.182 -2.206 2.786 4.170 hybrid contribution -1.096 1.340 -0.240 1.748 sum -3.279 -0.866 2.545 4.240 Atomic orbital electron populations 1.21793 0.96531 1.01048 1.01512 1.21451 0.94847 0.97023 1.02406 1.22363 0.97317 0.96883 1.02401 1.21696 0.90243 0.93876 0.87925 0.89227 1.86618 1.77329 1.56084 1.15021 1.22458 0.95193 0.96970 1.05621 1.20187 0.89318 0.82680 0.77301 1.90538 1.70005 1.32065 1.55490 1.43316 1.02569 1.07122 1.64164 1.19169 1.19232 1.02544 1.04962 0.90197 1.25494 0.99939 0.96276 0.93687 1.70154 1.31476 1.45209 1.01471 0.86435 0.81859 0.80322 0.79583 1.19020 1.20755 1.20216 1.21882 0.83780 0.98128 0.93205 1.22484 0.94323 1.00679 0.98062 1.22090 0.98172 1.00143 0.95656 1.22037 0.97367 0.99805 0.96472 1.22600 0.95394 1.00436 0.98351 0.92998 0.93160 0.93030 0.91479 0.92280 0.91464 0.91964 0.79190 0.90055 0.87028 0.92281 0.90168 0.89904 0.92806 0.92635 0.92813 0.92687 0.92621 0.92834 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.15 0.37 -1.36 16 2 C -0.12 -1.63 5.83 -26.73 -0.16 -1.79 16 3 C -0.15 -2.33 4.89 -26.73 -0.13 -2.47 16 4 C 0.12 2.35 2.52 -26.73 -0.07 2.28 16 5 H 0.09 1.83 8.05 -51.93 -0.42 1.41 16 6 O -0.55 -11.17 11.96 -51.92 -0.62 -11.79 16 7 C -0.16 -3.56 3.55 -27.88 -0.10 -3.66 16 8 C 0.51 13.07 7.16 -10.98 -0.08 12.99 16 9 O -0.60 -16.57 14.74 -11.14 -0.16 -16.73 16 10 N -0.45 -11.10 2.48 -105.57 -0.26 -11.36 16 11 C -0.33 -8.04 6.90 -14.93 -0.10 -8.14 16 12 H 0.08 1.93 6.95 -52.48 -0.36 1.56 16 13 C 0.05 1.26 3.47 -17.47 -0.06 1.20 16 14 N -0.85 -21.16 11.47 55.50 0.64 -20.52 16 15 Si 0.89 18.44 29.62 -169.99 -5.04 13.41 16 16 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 19 C 0.13 3.01 3.28 -65.89 -0.22 2.79 16 20 C -0.12 -2.43 6.36 -25.03 -0.16 -2.59 16 21 C -0.12 -2.03 6.80 -25.61 -0.17 -2.21 16 22 C -0.12 -1.89 6.80 -25.62 -0.17 -2.07 16 23 C -0.13 -2.46 6.39 -25.07 -0.16 -2.62 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.95 7.82 -51.92 -0.41 0.55 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.36 6.40 9.05 45.56 0.41 6.81 16 32 H 0.08 1.72 7.78 -51.93 -0.40 1.32 16 33 H 0.11 2.56 5.43 -51.93 -0.28 2.28 16 34 H 0.27 6.29 8.31 -40.82 -0.34 5.96 16 35 H 0.08 1.93 7.01 -51.93 -0.36 1.57 16 36 H 0.08 1.88 7.10 -51.93 -0.37 1.51 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.42 6.71 -51.93 -0.35 1.08 16 LS Contribution 337.37 15.07 5.08 5.08 Total: -1.00 -28.28 337.37 -8.32 -36.61 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -6.75 Total: 12.95 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.21 Total: -7.64 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.37 Total: -31.88 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.79 Total: -28.53 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.04 Total: 13.41 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.28 -8.32 -36.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611007441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.558 kcal (2) G-P(sol) polarization free energy of solvation -28.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds