Wall clock time and date at job start Mon Mar 30 2020 01:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00470 * 2 1 3 5 5 C 1.53000 * 109.47060 * 175.00005 * 4 2 1 6 6 O 1.45198 * 109.46884 * 180.02562 * 5 4 2 7 7 C 1.34637 * 117.00201 * 179.97438 * 6 5 4 8 8 O 1.21513 * 119.99934 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00489 * 179.97438 * 7 6 5 10 10 C 1.46924 * 120.62681 * 0.02562 * 9 7 6 11 11 C 1.53197 * 108.77389 * 126.36796 * 10 9 7 12 12 C 1.53040 * 109.30971 * 54.63465 * 11 10 9 13 13 C 1.53035 * 109.53943 * 298.63299 * 12 11 10 14 14 H 1.08998 * 109.50027 * 301.38361 * 13 12 11 15 15 C 1.50704 * 109.50009 * 181.31566 * 13 12 11 16 16 H 1.08000 * 119.99478 * 0.02562 * 15 13 12 17 17 C 1.37875 * 120.00197 * 180.02562 * 15 13 12 18 18 N 1.31512 * 119.99896 * 180.02562 * 17 15 13 19 19 Si 1.86794 * 119.99896 * 0.02562 * 17 15 13 20 20 H 1.48499 * 109.47168 * 90.00226 * 19 17 15 21 21 H 1.48509 * 109.47003 * 210.00064 * 19 17 15 22 22 H 1.48497 * 109.47374 * 330.00037 * 19 17 15 23 23 C 1.46927 * 120.63251 * 179.72480 * 9 7 6 24 24 H 1.09008 * 109.46970 * 299.99579 * 1 2 3 25 25 H 1.08996 * 109.47654 * 59.99341 * 1 2 3 26 26 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46970 * 240.00421 * 2 1 3 28 28 H 1.09008 * 109.46731 * 60.00275 * 3 2 1 29 29 H 1.08998 * 109.47430 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47271 * 300.00893 * 3 2 1 31 31 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 32 32 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 33 33 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 34 34 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 35 35 H 1.09005 * 109.58813 * 246.15410 * 10 9 7 36 36 H 1.08997 * 109.58886 * 6.44084 * 10 9 7 37 37 H 1.09000 * 109.49836 * 174.58628 * 11 10 9 38 38 H 1.08997 * 109.49796 * 294.68059 * 11 10 9 39 39 H 1.09007 * 109.46001 * 58.65771 * 12 11 10 40 40 H 1.08998 * 109.45978 * 178.62628 * 12 11 10 41 41 H 0.97000 * 120.00235 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58561 * 353.41673 * 23 9 7 43 43 H 1.08995 * 109.58958 * 113.84169 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1878 6 8 4.0488 -1.5162 2.3730 7 6 5.3792 -1.6962 2.4745 8 8 6.1157 -1.2923 1.5964 9 7 5.8942 -2.3245 3.5500 10 6 5.0165 -2.8189 4.6195 11 6 5.3120 -4.3039 4.8528 12 6 6.8058 -4.4849 5.1316 13 6 7.6132 -4.0165 3.9189 14 1 7.3158 -4.5893 3.0405 15 6 9.0824 -4.2251 4.1817 16 1 9.4082 -4.6498 5.1197 17 6 10.0107 -3.8739 3.2246 18 7 11.2927 -4.0564 3.4538 19 14 9.4472 -3.1387 1.6025 20 1 9.3819 -1.6602 1.7252 21 1 10.4097 -3.5046 0.5323 22 1 8.1022 -3.6668 1.2602 23 6 7.3433 -2.5337 3.6720 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.6767 1.9563 0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6054 -1.7199 1.2950 32 1 1.7517 -0.1584 2.1369 33 1 3.8532 -1.3940 0.3000 34 1 3.9994 0.1674 1.1419 35 1 5.2066 -2.2601 5.5359 36 1 3.9747 -2.6935 4.3245 37 1 4.7366 -4.6594 5.7076 38 1 5.0357 -4.8736 3.9656 39 1 7.0864 -3.8953 6.0044 40 1 7.0147 -5.5375 5.3221 41 1 11.9458 -3.8096 2.7803 42 1 7.8363 -2.2225 2.7510 43 1 7.7274 -1.9511 4.5093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859216865.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:51 Heat of formation + Delta-G solvation = -123.652005 kcal Electronic energy + Delta-G solvation = -21483.337660 eV Core-core repulsion = 18333.960549 eV Total energy + Delta-G solvation = -3149.377111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.77264 -39.48292 -37.98715 -36.88484 -35.35602 -33.71923 -32.29262 -30.81520 -28.05662 -27.12656 -26.65309 -24.30957 -23.60018 -22.20477 -21.04919 -20.55724 -19.20097 -18.80605 -18.17382 -17.77641 -16.59412 -16.21455 -15.83985 -15.58201 -15.33839 -15.04954 -14.90359 -14.82654 -14.49387 -14.24322 -13.76679 -13.61504 -13.19500 -13.06625 -12.96893 -12.84690 -12.62949 -12.36666 -12.18830 -12.03212 -11.88341 -11.81768 -11.64955 -11.57990 -11.57486 -11.38335 -11.11849 -11.04620 -10.82956 -9.75177 -8.40564 -6.42447 1.03668 1.21484 1.28723 1.39675 1.64646 2.19124 2.81607 2.96947 3.79559 3.81458 3.90758 4.03359 4.07122 4.12265 4.15699 4.29377 4.38284 4.39996 4.48670 4.57377 4.69980 4.71619 4.78479 4.84554 4.88251 4.90669 4.94668 5.00098 5.07226 5.10541 5.18663 5.24780 5.30624 5.37331 5.41430 5.45614 5.51140 5.60617 5.66286 6.24888 6.30315 6.66845 7.14998 7.23176 8.75409 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025935 B = 0.004719 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.380943 B = 5931.959709 C = 6765.144482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 C -0.155 4.155 4 C -0.103 4.103 5 C 0.076 3.924 6 O -0.360 6.360 7 C 0.639 3.361 8 O -0.620 6.620 9 N -0.591 5.591 10 C 0.109 3.891 11 C -0.127 4.127 12 C -0.098 4.098 13 C 0.002 3.998 14 H 0.014 0.986 15 C -0.509 4.509 16 H 0.056 0.944 17 C 0.031 3.969 18 N -0.935 5.935 19 Si 0.932 3.068 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.270 1.270 23 C 0.123 3.877 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.268 0.732 42 H 0.050 0.950 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.309 7.191 -1.984 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.212 4.212 4 C -0.141 4.141 5 C 0.002 3.998 6 O -0.274 6.274 7 C 0.394 3.606 8 O -0.513 6.513 9 N -0.330 5.330 10 C -0.011 4.011 11 C -0.165 4.165 12 C -0.136 4.136 13 C -0.017 4.017 14 H 0.032 0.968 15 C -0.548 4.548 16 H 0.074 0.926 17 C -0.168 4.168 18 N -0.575 5.575 19 Si 0.762 3.238 20 H -0.207 1.207 21 H -0.219 1.219 22 H -0.195 1.195 23 C 0.002 3.998 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.992 7.362 -2.344 25.206 hybrid contribution 0.912 0.393 -1.171 1.535 sum -23.080 7.755 -3.514 24.600 Atomic orbital electron populations 1.21787 0.93100 1.02437 1.02592 1.21055 0.97214 0.96113 0.96757 1.21965 1.00547 0.95988 1.02744 1.21649 0.89613 1.02706 1.00086 1.23335 0.96434 0.96047 0.83995 1.86193 1.20639 1.73839 1.46723 1.18292 0.81624 0.78251 0.82414 1.90940 1.61015 1.57018 1.42326 1.47383 1.08366 1.57456 1.19837 1.22040 0.94173 0.95277 0.89643 1.21953 0.96282 0.95232 1.02997 1.21396 0.94074 1.01115 0.96998 1.19386 0.94777 0.90889 0.96677 0.96779 1.21281 0.90178 1.40668 1.02661 0.92602 1.25591 0.94928 0.95737 1.00523 1.69970 1.01558 1.49677 1.36269 0.86148 0.77535 0.78896 0.81219 1.20682 1.21854 1.19548 1.22190 0.76782 0.99879 1.00941 0.91969 0.91740 0.92098 0.91122 0.91867 0.93760 0.91567 0.90019 0.89874 0.92435 0.91605 0.89330 0.87474 0.87106 0.92617 0.91698 0.92157 0.92262 0.93150 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.19 71.98 0.66 -0.84 16 2 C -0.09 -1.31 2.92 -10.80 -0.03 -1.34 16 3 C -0.16 -2.23 8.95 71.98 0.64 -1.59 16 4 C -0.10 -1.74 5.06 30.59 0.15 -1.58 16 5 C 0.08 1.94 5.23 71.98 0.38 2.31 16 6 O -0.36 -11.14 8.86 -55.47 -0.49 -11.63 16 7 C 0.64 25.37 8.43 129.79 1.09 26.47 16 8 O -0.62 -29.62 15.55 19.80 0.31 -29.32 16 9 N -0.59 -22.39 2.98 -950.15 -2.83 -25.22 16 10 C 0.11 2.93 6.45 86.36 0.56 3.49 16 11 C -0.13 -3.37 6.08 30.67 0.19 -3.19 16 12 C -0.10 -3.50 5.11 30.62 0.16 -3.34 16 13 C 0.00 0.11 1.83 -11.62 -0.02 0.09 16 14 H 0.01 0.70 7.20 -2.39 -0.02 0.69 16 15 C -0.51 -28.62 9.15 25.60 0.23 -28.39 16 16 H 0.06 3.35 7.99 -2.91 -0.02 3.32 16 17 C 0.03 1.85 5.45 84.65 0.46 2.31 16 18 N -0.93 -58.51 13.96 21.45 0.30 -58.21 16 19 Si 0.93 49.95 24.32 68.60 1.67 51.62 16 20 H -0.28 -15.20 6.93 99.48 0.69 -14.51 16 21 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 22 H -0.27 -14.57 6.53 99.48 0.65 -13.92 16 23 C 0.12 5.58 5.09 86.21 0.44 6.01 16 24 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.04 0.77 6.57 -2.39 -0.02 0.75 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.73 6.56 -2.39 -0.02 1.72 16 35 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.11 2.40 6.92 -2.39 -0.02 2.38 16 37 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 39 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 42 H 0.05 2.61 2.31 -2.39 -0.01 2.60 16 43 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -71.78 333.13 4.75 -67.03 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 0.89 Total: 5.30 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 4.91 Total: 0.42 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -2.53 Total: -83.43 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.18 Total: -40.94 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 1.67 Total: 51.62 kcal Total: -71.78 4.75 -67.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859216865.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.624 kcal (2) G-P(sol) polarization free energy of solvation -71.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds