Wall clock time and date at job start Mon Mar 30 2020 01:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 O 1.45210 * 109.46841 * 179.97438 * 5 4 3 7 7 C 1.34631 * 116.99743 * 180.02562 * 6 5 4 8 8 O 1.21507 * 120.00356 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99869 * 180.02562 * 7 6 5 10 10 C 1.46507 * 119.99864 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.40991 * 34.99944 * 10 9 7 12 12 C 1.52962 * 109.40852 * 154.85453 * 10 9 7 13 13 C 1.53231 * 109.39775 * 183.70597 * 12 10 9 14 14 C 1.51264 * 108.53880 * 305.36778 * 13 12 10 15 15 C 1.37873 * 120.85568 * 231.37261 * 14 13 12 16 16 N 1.31518 * 119.99849 * 0.02562 * 15 14 13 17 17 Si 1.86802 * 120.00381 * 179.97438 * 15 14 13 18 18 H 1.48500 * 109.46853 * 90.00171 * 17 15 14 19 19 H 1.48495 * 109.47343 * 209.99960 * 17 15 14 20 20 H 1.48497 * 109.47090 * 330.00725 * 17 15 14 21 21 C 1.51271 * 118.29699 * 51.35500 * 14 13 12 22 22 C 1.52953 * 109.41162 * 275.13685 * 10 9 7 23 23 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 24 24 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 27 27 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 29 29 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 30 30 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 31 31 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 32 32 H 1.08992 * 109.47098 * 299.99158 * 5 4 3 33 33 H 1.09001 * 109.47583 * 60.00267 * 5 4 3 34 34 H 0.96994 * 119.99652 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.48086 * 303.68093 * 12 10 9 36 36 H 1.09003 * 109.48158 * 63.71226 * 12 10 9 37 37 H 1.08992 * 109.63111 * 65.08851 * 13 12 10 38 38 H 1.09004 * 109.62288 * 185.66148 * 13 12 10 39 39 H 0.96996 * 119.99646 * 180.02562 * 16 15 14 40 40 H 1.08999 * 109.62849 * 68.36641 * 21 14 13 41 41 H 1.09003 * 109.62839 * 188.93821 * 21 14 13 42 42 H 1.08992 * 109.48626 * 296.27792 * 22 10 9 43 43 H 1.08998 * 109.48057 * 56.32210 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 8 5.5321 2.8849 0.0000 7 6 6.1433 4.0845 0.0011 8 8 5.4815 5.1036 0.0015 9 7 7.4892 4.1550 0.0006 10 6 8.1544 5.4604 0.0012 11 1 7.5687 6.1651 0.5915 12 6 9.5490 5.3200 0.6136 13 6 10.2086 6.7004 0.6991 14 6 10.1926 7.3272 -0.6774 15 6 11.3453 7.8381 -1.2352 16 7 12.4781 7.7838 -0.5693 17 14 11.2984 8.6063 -2.9373 18 1 11.0091 10.0579 -2.8174 19 1 12.6126 8.4169 -3.6023 20 1 10.2362 7.9551 -3.7452 21 6 8.8794 7.3788 -1.4267 22 6 8.2695 5.9729 -1.4353 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3635 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.9337 0.9286 0.8892 31 1 3.9330 0.9287 -0.8908 32 1 3.7164 3.3992 -0.8895 33 1 3.7171 3.3983 0.8905 34 1 8.0174 3.3415 -0.0001 35 1 9.4657 4.8943 1.6136 36 1 10.1561 4.6648 -0.0111 37 1 9.6527 7.3294 1.3943 38 1 11.2382 6.5936 1.0407 39 1 13.2889 8.1436 -0.9616 40 1 8.2004 8.0706 -0.9283 41 1 9.0550 7.7078 -2.4509 42 1 8.9076 5.3022 -2.0106 43 1 7.2789 6.0103 -1.8884 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193782946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:21 Heat of formation + Delta-G solvation = -125.621425 kcal Electronic energy + Delta-G solvation = -20516.051667 eV Core-core repulsion = 17366.589155 eV Total energy + Delta-G solvation = -3149.462512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.18928 -37.71520 -36.46918 -35.53764 -33.79191 -31.92759 -31.34398 -29.68919 -27.47491 -26.30980 -22.88735 -21.99989 -21.53956 -21.37939 -20.64054 -19.63501 -18.20203 -16.71681 -16.48991 -16.05376 -15.67433 -14.84389 -14.46650 -14.17292 -14.06764 -13.85410 -13.27741 -12.97515 -12.85905 -12.65583 -12.32605 -12.12423 -11.76755 -11.71123 -11.51158 -11.44927 -11.14385 -11.03097 -10.92589 -10.83979 -10.73372 -10.41783 -10.34883 -10.09733 -9.98136 -9.56071 -9.05214 -8.90744 -8.50982 -8.34929 -6.11599 -4.02580 2.43998 3.17168 3.27872 3.36027 3.37296 4.26914 4.37869 4.55305 4.65250 4.78875 4.86839 5.00720 5.16347 5.22735 5.25974 5.40492 5.45280 5.50761 5.66111 5.66880 5.70802 5.81785 5.85398 5.95933 6.00499 6.16005 6.38479 6.46331 6.53449 6.69489 6.78417 6.87866 6.94109 7.09262 7.21051 7.42634 7.63431 7.69331 7.74368 7.88994 8.36223 8.69952 8.94473 9.53156 10.97755 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.048188 B = 0.002949 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.915102 B = 9491.652913 C = 9797.383318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.120 4.120 5 C 0.087 3.913 6 O -0.379 6.379 7 C 0.642 3.358 8 O -0.576 6.576 9 N -0.702 5.702 10 C 0.169 3.831 11 H 0.081 0.919 12 C -0.114 4.114 13 C 0.013 3.987 14 C -0.489 4.489 15 C 0.076 3.924 16 N -0.890 5.890 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.264 1.264 21 C -0.019 4.019 22 C -0.115 4.115 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.400 0.600 35 H 0.038 0.962 36 H 0.057 0.943 37 H 0.007 0.993 38 H 0.063 0.937 39 H 0.264 0.736 40 H 0.020 0.980 41 H 0.037 0.963 42 H 0.053 0.947 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.492 -14.120 0.914 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.158 4.158 5 C 0.012 3.988 6 O -0.293 6.293 7 C 0.394 3.606 8 O -0.465 6.465 9 N -0.359 5.359 10 C 0.068 3.932 11 H 0.099 0.901 12 C -0.153 4.153 13 C -0.025 4.025 14 C -0.508 4.508 15 C -0.127 4.127 16 N -0.528 5.528 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.189 1.189 21 C -0.057 4.057 22 C -0.154 4.154 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.234 0.766 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.026 0.974 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.684 -13.588 0.916 21.537 hybrid contribution 0.233 0.075 -0.964 0.995 sum -16.451 -13.513 -0.048 21.290 Atomic orbital electron populations 1.21780 0.95773 1.01628 1.01926 1.21507 0.95895 0.96442 1.02266 1.21527 0.93901 0.97413 1.02706 1.21601 0.95454 0.95010 1.03693 1.22905 0.75401 0.97849 1.02641 1.86204 1.23528 1.32102 1.87492 1.18255 0.83935 0.81734 0.76682 1.90975 1.64689 1.34772 1.56103 1.45341 1.02246 1.11540 1.76797 1.21149 0.93306 0.80504 0.98236 0.90100 1.21973 0.93487 1.02219 0.97589 1.19352 0.97764 0.89519 0.95849 1.20051 0.91770 1.37785 1.01148 1.24847 0.94966 0.95326 0.97537 1.69833 0.99404 1.45524 1.38003 0.86669 0.76962 0.79895 0.84893 1.20376 1.21667 1.18935 1.19805 0.96430 0.92005 0.97461 1.21945 0.98606 1.00133 0.94730 0.92691 0.92683 0.92751 0.91849 0.91853 0.91522 0.91522 0.90829 0.90813 0.91391 0.91405 0.76607 0.94350 0.92454 0.97415 0.91891 0.92576 0.96146 0.94506 0.92849 0.94431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.78 5.93 -26.73 -0.16 -0.94 16 3 C -0.12 -0.85 5.21 -26.73 -0.14 -0.99 16 4 C -0.12 -1.05 5.59 -26.73 -0.15 -1.20 16 5 C 0.09 1.04 5.47 37.16 0.20 1.25 16 6 O -0.38 -5.65 10.27 -40.30 -0.41 -6.06 16 7 C 0.64 11.47 8.71 54.06 0.47 11.94 16 8 O -0.58 -12.09 15.79 -19.28 -0.30 -12.39 16 9 N -0.70 -11.98 5.08 -58.77 -0.30 -12.28 16 10 C 0.17 3.37 2.35 -67.97 -0.16 3.21 16 11 H 0.08 1.76 7.57 -51.93 -0.39 1.37 16 12 C -0.11 -2.32 5.40 -26.63 -0.14 -2.46 16 13 C 0.01 0.32 5.97 -27.49 -0.16 0.15 16 14 C -0.49 -12.73 5.51 -98.93 -0.55 -13.28 16 15 C 0.08 2.05 5.46 -17.82 -0.10 1.96 16 16 N -0.89 -25.23 12.73 55.43 0.71 -24.52 16 17 Si 0.89 21.01 27.53 -169.99 -4.68 16.33 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.26 -6.08 6.10 56.52 0.35 -5.73 16 21 C -0.02 -0.45 5.60 -27.48 -0.15 -0.60 16 22 C -0.12 -2.45 5.50 -26.63 -0.15 -2.60 16 23 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.40 5.75 8.71 -40.82 -0.36 5.40 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.06 1.66 7.07 -51.93 -0.37 1.29 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.04 0.87 4.59 -51.93 -0.24 0.63 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 343.01 15.07 5.17 5.17 Total: -1.00 -29.56 343.01 -8.37 -37.93 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.73 Total: -0.10 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.82 Total: -4.07 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.41 Total: -36.80 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.72 Total: -18.45 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.68 Total: 16.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.56 -8.37 -37.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193782946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.692 kcal (2) G-P(sol) polarization free energy of solvation -29.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds