Wall clock time and date at job start Mon Mar 30 2020 01:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 6 6 O 1.45209 * 109.46991 * 59.99957 * 5 2 1 7 7 C 1.34637 * 116.99798 * 180.02562 * 6 5 2 8 8 O 1.21513 * 120.00427 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99887 * 180.02562 * 7 6 5 10 10 C 1.46929 * 120.62797 * 359.97438 * 9 7 6 11 11 C 1.53194 * 108.77560 * 126.37233 * 10 9 7 12 12 C 1.53041 * 109.30851 * 54.63101 * 11 10 9 13 13 C 1.53035 * 109.54160 * 298.63498 * 12 11 10 14 14 H 1.08993 * 109.49837 * 301.38229 * 13 12 11 15 15 C 1.50705 * 109.49587 * 181.31728 * 13 12 11 16 16 H 1.07994 * 119.99920 * 0.02562 * 15 13 12 17 17 C 1.37884 * 119.99931 * 180.02562 * 15 13 12 18 18 N 1.31513 * 119.99781 * 359.97438 * 17 15 13 19 19 Si 1.86790 * 119.99996 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47228 * 60.00208 * 19 17 15 21 21 H 1.48502 * 109.47109 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47372 * 299.99895 * 19 17 15 23 23 C 1.46924 * 120.63077 * 179.71737 * 9 7 6 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 5 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 5 2 1 35 35 H 1.08998 * 109.58657 * 246.15661 * 10 9 7 36 36 H 1.09001 * 109.58479 * 6.44585 * 10 9 7 37 37 H 1.08994 * 109.49806 * 174.58862 * 11 10 9 38 38 H 1.09002 * 109.49298 * 294.68424 * 11 10 9 39 39 H 1.09000 * 109.45650 * 58.66137 * 12 11 10 40 40 H 1.09007 * 109.45872 * 178.62677 * 12 11 10 41 41 H 0.97005 * 120.00011 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.58649 * 353.41639 * 23 9 7 43 43 H 1.09005 * 109.58225 * 113.84029 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0400 -0.7213 -1.2491 6 8 1.5560 -0.0368 -2.4348 7 6 1.9174 -0.5488 -3.6264 8 8 2.6185 -1.5401 -3.6744 9 7 1.5025 0.0389 -4.7661 10 6 0.6549 1.2383 -4.7243 11 6 1.3103 2.3349 -5.5698 12 6 1.5718 1.7988 -6.9792 13 6 2.5309 0.6086 -6.9043 14 1 3.4634 0.9217 -6.4350 15 6 2.8132 0.1018 -8.2953 16 1 2.3549 0.5808 -9.1478 17 6 3.6565 -0.9733 -8.4794 18 7 4.2150 -1.5563 -7.4411 19 14 4.0070 -1.6010 -10.2034 20 1 4.6261 -0.5175 -11.0083 21 1 4.9365 -2.7568 -10.1300 22 1 2.7364 -2.0282 -10.8425 23 6 1.8937 -0.5045 -6.0740 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 -1.7488 1.2493 31 1 3.1300 -0.7207 1.2495 32 1 1.6766 -0.2073 2.1393 33 1 3.1300 -0.7209 -1.2494 34 1 1.6767 -1.7489 -1.2491 35 1 -0.3297 1.0043 -5.1290 36 1 0.5549 1.5793 -3.6938 37 1 0.6458 3.1970 -5.6259 38 1 2.2542 2.6316 -5.1124 39 1 0.6306 1.4793 -7.4266 40 1 2.0159 2.5848 -7.5901 41 1 4.8080 -2.3130 -7.5706 42 1 2.6127 -1.3117 -5.9340 43 1 1.0118 -0.8834 -6.5908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194371471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:09 Heat of formation + Delta-G solvation = -107.872965 kcal Electronic energy + Delta-G solvation = -21839.571378 eV Core-core repulsion = 18690.878497 eV Total energy + Delta-G solvation = -3148.692881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.01066 -38.03992 -36.75468 -35.05750 -33.32524 -31.76884 -29.77323 -27.40171 -27.31234 -26.81868 -25.05722 -24.30521 -21.80180 -20.56284 -19.11088 -18.82137 -17.39381 -16.33421 -16.16705 -15.96473 -14.74927 -14.49911 -14.41158 -14.19040 -13.66792 -13.59956 -13.32936 -12.93889 -12.58586 -12.48366 -12.31608 -12.17445 -11.93660 -11.79658 -11.73750 -10.99157 -10.95760 -10.95260 -10.89708 -10.67230 -10.51184 -10.39537 -10.23514 -10.11864 -9.89130 -9.70995 -9.11176 -8.99958 -8.43800 -7.79629 -6.00004 -4.09271 2.77988 3.32687 3.38372 3.39685 3.56083 4.36909 4.44589 4.68082 4.68616 4.92021 5.29775 5.31606 5.41521 5.46797 5.50868 5.56767 5.61327 5.67010 5.69466 5.73959 5.78699 5.90006 5.93826 6.03265 6.08070 6.24324 6.26570 6.29094 6.34923 6.56948 6.66044 6.76995 6.90306 6.98169 7.17289 7.27702 7.65008 7.86592 8.00523 8.24547 8.38048 8.93790 9.06027 9.56452 11.05244 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029580 B = 0.004640 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.358202 B = 6033.380115 C = 6657.195766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 C -0.140 4.140 4 C -0.140 4.140 5 C 0.097 3.903 6 O -0.373 6.373 7 C 0.639 3.361 8 O -0.570 6.570 9 N -0.587 5.587 10 C 0.115 3.885 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.039 3.961 14 H 0.029 0.971 15 C -0.522 4.522 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.126 3.874 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.265 0.735 42 H 0.125 0.875 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.361 5.270 14.154 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 C -0.197 4.197 4 C -0.198 4.198 5 C 0.022 3.978 6 O -0.288 6.288 7 C 0.393 3.607 8 O -0.459 6.459 9 N -0.327 5.327 10 C -0.008 4.008 11 C -0.172 4.172 12 C -0.149 4.149 13 C 0.020 3.980 14 H 0.048 0.952 15 C -0.560 4.560 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.518 5.518 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.007 3.993 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.142 0.858 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.005 4.780 14.253 16.585 hybrid contribution 0.296 -0.469 -0.928 1.081 sum -6.709 4.311 13.325 15.529 Atomic orbital electron populations 1.21830 0.93839 1.01876 1.02092 1.20646 0.96693 0.96410 0.93127 1.21833 1.00940 0.94832 1.02090 1.21820 1.01364 1.00331 0.96245 1.22891 0.98951 0.95229 0.80760 1.86160 1.72102 1.56530 1.14042 1.18181 0.79513 0.82114 0.80940 1.90989 1.41226 1.27154 1.86524 1.47531 1.51734 1.28843 1.04560 1.21582 0.93316 0.85547 1.00396 1.21955 1.00417 0.96895 0.97944 1.21631 1.00193 0.99343 0.93692 1.18929 0.93604 0.90219 0.95281 0.95240 1.21038 1.28112 1.15190 0.91675 0.92267 1.25069 0.95474 0.96594 0.96909 1.69877 1.30389 1.22387 1.29138 0.86628 0.78198 0.78355 0.84653 1.20256 1.21255 1.20212 1.22326 0.99497 1.00726 0.76761 0.92789 0.91700 0.92733 0.92744 0.92693 0.91663 0.92321 0.92258 0.91859 0.91537 0.91662 0.92190 0.90455 0.92158 0.92175 0.93108 0.92954 0.92530 0.85761 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.33 37.16 0.31 -1.10 16 2 C -0.07 -0.75 0.86 -154.51 -0.13 -0.88 16 3 C -0.14 -1.47 8.33 37.16 0.31 -1.16 16 4 C -0.14 -1.24 8.47 37.16 0.31 -0.92 16 5 C 0.10 1.42 4.33 37.15 0.16 1.58 16 6 O -0.37 -6.48 7.52 -40.31 -0.30 -6.79 16 7 C 0.64 13.84 8.43 54.06 0.46 14.30 16 8 O -0.57 -14.48 15.55 -19.28 -0.30 -14.77 16 9 N -0.59 -12.44 2.98 -178.80 -0.53 -12.97 16 10 C 0.11 1.93 6.45 -3.71 -0.02 1.91 16 11 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 12 C -0.11 -2.22 5.11 -26.69 -0.14 -2.36 16 13 C 0.04 0.97 2.24 -91.86 -0.21 0.76 16 14 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 15 C -0.52 -14.12 8.56 -34.44 -0.29 -14.42 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 18 N -0.88 -25.77 11.39 55.43 0.63 -25.14 16 19 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.13 3.10 5.38 -3.92 -0.02 3.08 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.16 6.92 -51.93 -0.36 0.80 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 42 H 0.12 3.56 5.11 -51.93 -0.27 3.30 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -30.66 339.87 -7.65 -38.31 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.73 Total: 0.01 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 0.48 Total: 0.02 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.10 Total: -38.11 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.60 Total: -21.56 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.66 -7.65 -38.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194371471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.566 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds