Wall clock time and date at job start Mon Mar 30 2020 01:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 6 6 O 1.45209 * 109.46991 * 59.99957 * 5 2 1 7 7 C 1.34637 * 116.99798 * 180.02562 * 6 5 2 8 8 O 1.21513 * 120.00427 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99887 * 180.02562 * 7 6 5 10 10 C 1.46929 * 120.62797 * 359.97438 * 9 7 6 11 11 C 1.53194 * 108.77560 * 126.37233 * 10 9 7 12 12 C 1.53041 * 109.30851 * 54.63101 * 11 10 9 13 13 C 1.53035 * 109.54160 * 298.63498 * 12 11 10 14 14 H 1.08993 * 109.49837 * 301.38229 * 13 12 11 15 15 C 1.50705 * 109.49587 * 181.31728 * 13 12 11 16 16 H 1.07994 * 119.99920 * 0.02562 * 15 13 12 17 17 C 1.37884 * 119.99931 * 180.02562 * 15 13 12 18 18 N 1.31513 * 119.99781 * 359.97438 * 17 15 13 19 19 Si 1.86790 * 119.99996 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47228 * 60.00208 * 19 17 15 21 21 H 1.48502 * 109.47109 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47372 * 299.99895 * 19 17 15 23 23 C 1.46924 * 120.63077 * 179.71737 * 9 7 6 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 5 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 5 2 1 35 35 H 1.08998 * 109.58657 * 246.15661 * 10 9 7 36 36 H 1.09001 * 109.58479 * 6.44585 * 10 9 7 37 37 H 1.08994 * 109.49806 * 174.58862 * 11 10 9 38 38 H 1.09002 * 109.49298 * 294.68424 * 11 10 9 39 39 H 1.09000 * 109.45650 * 58.66137 * 12 11 10 40 40 H 1.09007 * 109.45872 * 178.62677 * 12 11 10 41 41 H 0.97005 * 120.00011 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.58649 * 353.41639 * 23 9 7 43 43 H 1.09005 * 109.58225 * 113.84029 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0400 -0.7213 -1.2491 6 8 1.5560 -0.0368 -2.4348 7 6 1.9174 -0.5488 -3.6264 8 8 2.6185 -1.5401 -3.6744 9 7 1.5025 0.0389 -4.7661 10 6 0.6549 1.2383 -4.7243 11 6 1.3103 2.3349 -5.5698 12 6 1.5718 1.7988 -6.9792 13 6 2.5309 0.6086 -6.9043 14 1 3.4634 0.9217 -6.4350 15 6 2.8132 0.1018 -8.2953 16 1 2.3549 0.5808 -9.1478 17 6 3.6565 -0.9733 -8.4794 18 7 4.2150 -1.5563 -7.4411 19 14 4.0070 -1.6010 -10.2034 20 1 4.6261 -0.5175 -11.0083 21 1 4.9365 -2.7568 -10.1300 22 1 2.7364 -2.0282 -10.8425 23 6 1.8937 -0.5045 -6.0740 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 -1.7488 1.2493 31 1 3.1300 -0.7207 1.2495 32 1 1.6766 -0.2073 2.1393 33 1 3.1300 -0.7209 -1.2494 34 1 1.6767 -1.7489 -1.2491 35 1 -0.3297 1.0043 -5.1290 36 1 0.5549 1.5793 -3.6938 37 1 0.6458 3.1970 -5.6259 38 1 2.2542 2.6316 -5.1124 39 1 0.6306 1.4793 -7.4266 40 1 2.0159 2.5848 -7.5901 41 1 4.8080 -2.3130 -7.5706 42 1 2.6127 -1.3117 -5.9340 43 1 1.0118 -0.8834 -6.5908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194371471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:08 Heat of formation + Delta-G solvation = -125.280084 kcal Electronic energy + Delta-G solvation = -21840.326208 eV Core-core repulsion = 18690.878497 eV Total energy + Delta-G solvation = -3149.447710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61971 -39.45205 -38.15747 -36.51841 -35.27749 -33.50364 -31.58698 -28.17909 -28.12499 -28.11954 -26.99514 -25.90770 -23.49047 -22.22642 -20.57014 -20.03851 -19.06575 -18.19449 -17.82507 -17.50880 -16.56043 -15.78466 -15.61384 -15.54370 -15.21478 -14.82183 -14.68178 -14.44712 -14.30502 -13.88556 -13.71533 -13.50063 -13.01829 -12.85282 -12.84465 -12.72108 -12.53353 -12.30286 -12.25873 -11.93204 -11.91399 -11.82326 -11.67578 -11.63346 -11.46106 -11.44815 -11.01099 -10.89710 -10.52686 -9.54630 -8.11244 -6.28845 1.21854 1.42853 1.44875 1.52579 1.83478 2.42485 2.98522 3.18491 3.70509 3.76055 3.99210 4.11121 4.15741 4.26829 4.35734 4.42339 4.51434 4.58246 4.72774 4.76549 4.81090 4.83971 4.85207 4.92499 5.02413 5.05586 5.08018 5.14412 5.17623 5.23873 5.26367 5.28405 5.42256 5.44963 5.48670 5.54172 5.60362 5.87100 5.98076 6.31030 6.52754 6.83949 7.35390 7.42182 8.92316 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029580 B = 0.004640 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.358202 B = 6033.380115 C = 6657.195766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 C -0.139 4.139 4 C -0.138 4.138 5 C 0.089 3.911 6 O -0.356 6.356 7 C 0.636 3.364 8 O -0.617 6.617 9 N -0.590 5.590 10 C 0.111 3.889 11 C -0.125 4.125 12 C -0.105 4.105 13 C 0.037 3.963 14 H -0.014 1.014 15 C -0.536 4.536 16 H 0.066 0.934 17 C 0.010 3.990 18 N -0.917 5.917 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.290 1.290 22 H -0.266 1.266 23 C 0.139 3.861 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.260 0.740 42 H 0.080 0.920 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.281 6.942 14.887 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 C -0.196 4.196 4 C -0.195 4.195 5 C 0.014 3.986 6 O -0.270 6.270 7 C 0.391 3.609 8 O -0.510 6.510 9 N -0.330 5.330 10 C -0.011 4.011 11 C -0.163 4.163 12 C -0.143 4.143 13 C 0.018 3.982 14 H 0.005 0.995 15 C -0.574 4.574 16 H 0.084 0.916 17 C -0.190 4.190 18 N -0.556 5.556 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.216 1.216 22 H -0.191 1.191 23 C 0.018 3.982 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.962 6.504 15.001 18.645 hybrid contribution 0.895 -0.969 -1.085 1.708 sum -8.066 5.535 13.917 17.011 Atomic orbital electron populations 1.21826 0.92854 1.02090 1.02689 1.20711 0.97437 0.96486 0.91647 1.21838 1.00664 0.94457 1.02663 1.21830 1.01346 1.00524 0.95800 1.23279 0.98463 0.95771 0.81087 1.86181 1.71502 1.56046 1.13255 1.18346 0.78894 0.81577 0.82127 1.90954 1.43297 1.29350 1.87380 1.47495 1.52033 1.30071 1.03365 1.21929 0.93308 0.83638 1.02190 1.21913 1.00980 0.98137 0.95284 1.21525 0.99145 0.97274 0.96315 1.18874 0.93121 0.92267 0.93979 0.99536 1.21483 1.27850 1.15098 0.92987 0.91577 1.25922 0.95400 0.96942 1.00698 1.70081 1.31213 1.22834 1.31431 0.85580 0.78265 0.77701 0.79960 1.19270 1.21573 1.19053 1.21795 0.98259 0.99609 0.78537 0.92823 0.92878 0.90340 0.90253 0.93219 0.92974 0.92104 0.92414 0.89562 0.92890 0.92241 0.89944 0.88100 0.87547 0.93385 0.92003 0.92623 0.93060 0.90184 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.33 71.98 0.60 -1.86 16 2 C -0.06 -1.26 0.86 -52.18 -0.04 -1.30 16 3 C -0.14 -2.64 8.33 71.98 0.60 -2.04 16 4 C -0.14 -2.14 8.47 71.98 0.61 -1.53 16 5 C 0.09 2.61 4.33 71.98 0.31 2.92 16 6 O -0.36 -12.33 7.52 -55.46 -0.42 -12.75 16 7 C 0.64 28.29 8.43 129.79 1.09 29.38 16 8 O -0.62 -33.04 15.55 19.80 0.31 -32.73 16 9 N -0.59 -25.22 2.98 -950.00 -2.83 -28.05 16 10 C 0.11 3.46 6.45 86.36 0.56 4.01 16 11 C -0.13 -3.85 6.08 30.67 0.19 -3.66 16 12 C -0.10 -4.06 5.11 30.62 0.16 -3.90 16 13 C 0.04 1.88 2.24 -11.60 -0.03 1.85 16 14 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 15 C -0.54 -29.43 8.56 25.60 0.22 -29.21 16 16 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 17 C 0.01 0.55 5.30 84.66 0.45 1.00 16 18 N -0.92 -56.08 11.39 21.45 0.24 -55.84 16 19 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 C 0.14 7.06 5.38 86.23 0.46 7.52 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 1.07 7.68 -2.39 -0.02 1.06 16 26 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 1.12 7.68 -2.39 -0.02 1.10 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.10 2.71 6.92 -2.39 -0.02 2.69 16 37 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 42 H 0.08 4.85 5.11 -2.39 -0.01 4.84 16 43 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -70.28 339.87 5.46 -64.82 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.95 Total: 15.21 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 5.18 Total: 3.18 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -2.58 Total: -83.89 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.11 Total: -45.48 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -70.28 5.46 -64.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194371471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.460 kcal (2) G-P(sol) polarization free energy of solvation -70.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds