Wall clock time and date at job start Mon Mar 30 2020 03:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 C 1.53003 * 109.47097 * 239.99921 * 2 1 3 5 5 O 1.45202 * 109.47454 * 120.00028 * 2 1 3 6 6 C 1.34227 * 117.00113 * 59.99669 * 5 2 1 7 7 O 1.20829 * 119.99881 * 0.02562 * 6 5 2 8 8 C 1.50697 * 120.00323 * 180.02562 * 6 5 2 9 9 C 1.53786 * 113.61519 * 80.86360 * 8 6 5 10 10 C 1.54049 * 86.98426 * 140.01979 * 9 8 6 11 11 N 1.46897 * 113.69699 * 220.01034 * 10 9 8 12 12 C 1.46907 * 111.00124 * 252.53706 * 11 10 9 13 13 C 1.53002 * 109.46995 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.46894 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00148 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99833 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00311 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99723 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47329 * 60.00210 * 18 16 14 20 20 H 1.48509 * 109.47052 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47552 * 300.00068 * 18 16 14 22 22 C 1.53781 * 113.61630 * 178.47308 * 8 6 5 23 23 H 1.09001 * 109.46913 * 299.99791 * 1 2 3 24 24 H 1.09000 * 109.47260 * 60.00241 * 1 2 3 25 25 H 1.09001 * 109.47048 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47344 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46798 * 300.00042 * 3 2 1 28 28 H 1.08999 * 109.47155 * 59.99502 * 3 2 1 29 29 H 1.09001 * 109.46916 * 299.99767 * 4 2 1 30 30 H 1.09000 * 109.46704 * 59.99988 * 4 2 1 31 31 H 1.08997 * 109.47113 * 179.97438 * 4 2 1 32 32 H 1.09002 * 112.84782 * 309.66950 * 8 6 5 33 33 H 1.08992 * 113.61675 * 254.61723 * 9 8 6 34 34 H 1.09000 * 113.60973 * 25.52011 * 9 8 6 35 35 H 1.09003 * 113.61268 * 89.11946 * 10 9 8 36 36 H 1.00899 * 111.00371 * 128.58116 * 11 10 9 37 37 H 1.08998 * 109.46816 * 299.99271 * 12 11 10 38 38 H 1.08997 * 109.46730 * 59.99761 * 12 11 10 39 39 H 1.09000 * 109.47180 * 299.99965 * 13 12 11 40 40 H 1.08996 * 109.47259 * 59.99837 * 13 12 11 41 41 H 0.96993 * 120.00372 * 179.97438 * 17 16 14 42 42 H 1.08999 * 113.61567 * 334.48200 * 22 8 6 43 43 H 1.08998 * 113.61196 * 105.38554 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6534 -1.9684 1.3379 7 8 0.9567 -2.5028 0.5079 8 6 2.1174 -2.7434 2.5442 9 6 1.2802 -2.4779 3.8065 10 6 1.3966 -3.9853 4.1020 11 7 0.1593 -4.5821 4.6225 12 6 0.2859 -4.8933 6.0526 13 6 -1.0195 -5.5113 6.5576 14 6 -0.8893 -5.8311 8.0244 15 1 0.0324 -5.6156 8.5444 16 6 -1.9470 -6.3988 8.7027 17 7 -3.0692 -6.6617 8.0695 18 14 -1.7854 -6.7959 10.5208 19 1 -1.5023 -5.5494 11.2765 20 1 -3.0530 -7.3945 11.0113 21 1 -0.6730 -7.7591 10.7202 22 6 1.5890 -4.1868 2.5897 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6767 -1.7490 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1300 -0.7209 -1.2495 32 1 3.1922 -2.6665 2.7089 33 1 1.7834 -1.8476 4.5396 34 1 0.2619 -2.1519 3.5944 35 1 2.2742 -4.2479 4.6927 36 1 -0.0958 -5.4035 4.0949 37 1 1.1032 -5.5993 6.1997 38 1 0.4924 -3.9777 6.6067 39 1 -1.8366 -4.8050 6.4104 40 1 -1.2263 -6.4267 6.0034 41 1 -3.8132 -7.0614 8.5465 42 1 0.6550 -4.3273 2.0456 43 1 2.3415 -4.9353 2.3412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308687449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:44 Heat of formation + Delta-G solvation = -83.786597 kcal Electronic energy + Delta-G solvation = -20579.029336 eV Core-core repulsion = 17431.380919 eV Total energy + Delta-G solvation = -3147.648418 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11778 -38.93442 -36.82592 -34.64980 -34.17344 -32.50373 -29.10050 -27.68052 -27.63204 -26.17240 -25.68914 -23.90125 -21.77804 -20.60668 -19.80140 -19.22505 -17.47910 -16.69828 -16.23526 -16.12785 -15.37639 -15.11097 -14.59552 -14.49974 -14.32935 -13.90125 -13.52564 -12.91323 -12.73290 -12.51948 -12.41844 -12.21940 -12.17491 -12.14730 -12.08022 -11.62296 -11.41955 -11.22089 -11.12131 -10.98788 -10.88500 -10.56881 -10.50905 -10.37005 -10.03014 -9.91837 -9.31645 -9.13739 -8.34298 -7.84959 -5.98484 -4.01287 2.15816 2.55372 3.34134 3.38539 3.40772 4.32156 4.43940 4.45775 4.47513 4.52365 4.59841 4.65898 4.83743 4.90632 5.04546 5.20012 5.27541 5.37281 5.41322 5.45797 5.50245 5.58570 5.62015 5.70160 5.73204 5.85545 5.98575 6.00052 6.06421 6.07679 6.26930 6.34560 6.43128 6.49111 6.99173 7.50685 7.73618 7.77784 7.83292 7.96072 8.09661 8.44492 9.05913 9.62384 11.12935 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.042799 B = 0.002767 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.065309 B =10116.074842 C =10187.577132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.114 3.886 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.351 6.351 6 C 0.478 3.522 7 O -0.502 6.502 8 C -0.114 4.114 9 C -0.106 4.106 10 C 0.062 3.938 11 N -0.679 5.679 12 C 0.065 3.935 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.122 4.122 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.340 0.660 37 H 0.016 0.984 38 H 0.058 0.942 39 H 0.025 0.975 40 H 0.014 0.986 41 H 0.261 0.739 42 H 0.103 0.897 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.232 13.374 -17.305 25.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.078 3.922 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.268 6.268 6 C 0.321 3.679 7 O -0.390 6.390 8 C -0.134 4.134 9 C -0.145 4.145 10 C -0.049 4.049 11 N -0.310 5.310 12 C -0.063 4.063 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.160 4.160 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.138 0.862 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.159 0.841 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.043 0.957 40 H 0.032 0.968 41 H 0.071 0.929 42 H 0.121 0.879 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.521 13.769 -17.437 25.028 hybrid contribution 0.587 -0.933 0.849 1.392 sum 12.109 12.836 -16.588 24.219 Atomic orbital electron populations 1.22492 0.93934 1.04935 1.02720 1.22170 0.94532 0.92262 0.83188 1.21845 1.02084 0.92761 1.03051 1.22484 1.01513 1.03246 0.96696 1.86573 1.69697 1.25687 1.44856 1.23512 0.77159 0.80320 0.86914 1.90561 1.35279 1.70075 1.43077 1.22455 1.02240 0.96391 0.92323 1.23083 1.00038 0.97840 0.93520 1.22943 0.93163 0.95181 0.93617 1.60666 1.30309 1.34670 1.05307 1.22222 1.00008 0.98575 0.85532 1.19069 0.91395 0.95640 0.95179 1.21141 0.99296 1.40858 0.94843 0.92814 1.25005 0.95329 0.95765 0.98273 1.69958 1.03653 1.43346 1.36297 0.86647 0.77250 0.78632 0.85384 1.20223 1.21277 1.20295 1.23245 1.02554 0.93169 0.97014 0.91851 0.91198 0.89668 0.91579 0.90482 0.91390 0.89762 0.91165 0.92139 0.86190 0.90604 0.88792 0.90825 0.84134 0.96544 0.92307 0.95660 0.96809 0.92921 0.87876 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 8.37 37.16 0.31 -1.52 16 2 C 0.11 1.12 1.13 -90.62 -0.10 1.01 16 3 C -0.14 -1.01 8.85 37.16 0.33 -0.68 16 4 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 5 O -0.35 -4.09 9.89 -39.25 -0.39 -4.48 16 6 C 0.48 5.97 6.79 36.00 0.24 6.21 16 7 O -0.50 -7.20 11.41 -18.75 -0.21 -7.41 16 8 C -0.11 -1.28 4.25 -90.96 -0.39 -1.66 16 9 C -0.11 -1.35 7.45 -25.77 -0.19 -1.54 16 10 C 0.06 0.86 4.14 -66.76 -0.28 0.58 16 11 N -0.68 -11.94 6.56 -105.71 -0.69 -12.64 16 12 C 0.06 1.35 5.47 -3.82 -0.02 1.33 16 13 C 0.02 0.64 5.23 -27.88 -0.15 0.50 16 14 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.12 -1.47 6.97 -25.92 -0.18 -1.65 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.08 1.04 5.89 -51.93 -0.31 0.74 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.95 5.89 -51.93 -0.31 0.64 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.34 8.09 -51.93 -0.42 0.92 16 35 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 36 H 0.34 5.82 8.55 -39.29 -0.34 5.48 16 37 H 0.02 0.33 8.13 -51.93 -0.42 -0.09 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.10 1.40 7.46 -51.93 -0.39 1.02 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -31.21 347.38 -8.49 -39.70 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.62 Total: 1.68 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -0.52 Total: -12.41 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.04 Total: -39.03 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.60 Total: -11.89 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.21 -8.49 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308687449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.089 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds